rna1225, rna1225 (mRNA) Nannochloropsis gaditana

Overview
Namerna1225
Unique Namerna1225
TypemRNA
OrganismNannochloropsis gaditana (N. gaditana B-31)
Sequence length2412
Alignment locationCM002457.1:101484..101699 -

Link to JBrowse

Properties
Property NameValue
Producthypothetical protein
Orig transcript idgnl|cribi|Naga_100083g11.6776.mrna
Orig protein idgnl|cribi|Naga_100083g11.6776
GbkeymRNA
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
CM002457.1supercontigCM002457.1:101484..101699 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
Naga_100083g11gene1180Nannochloropsis gaditana (N. gaditana B-31)gene


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
EWM29449.1cds1224Nannochloropsis gaditana (N. gaditana B-31)CDS


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
rna1225rna1225-proteinNannochloropsis gaditana (N. gaditana B-31)polypeptide


Sequences
The following sequences are available for this feature:

mRNA sequence

>rna1225 ID=rna1225|Name=rna1225|organism=Nannochloropsis gaditana|type=mRNA|length=2412bp
ATGATACGTAAATGTGAACCTCACCGACGCCCGGTGTACGCACTCGATAC
TCTACCACTATCTAAAAACAATACTACGCGGGGCCAGTCCCCACATGCTG
AAGCACGGCAGGCAAGCGCGGGTCCCAAACGAAAATTACGCAACCCATCA
ACTCCATCCAATGCTGGTGATGACAGAAGCATCACCACTAGTACTCCCAG
CCGGCGGTCATCCTCCGCGTCGATGGGACACACCCCACCATTGCGCCAAT
TCGAAACAGCAACAACACCGCCGTCTTCAAGAGGACATGGGGCGAAGAAC
GCACGGGGTATCACGGATCCGCCCGAAGCACAGGGAGTGCTCGTGTCGCG
CGTGTACGGTCTGTTAGCTGGGCTGACCTTGGTGCTGGTACGCGTGGTGG
GAGGGATCGTTACTCCCATCGCGGACTGCGACGAAACCTACAACTATTGG
GAACCTGTGCATTACCTTCTCTATGGCACGGGGATGCAAACCTGGGAGTA
TTCTCCCGAGTACACGTTGCGGTCCTACGCTTACCTCCTGCCGCCTGCCG
CGCTGGCCAAAGCCGGTGCTCTGGCCCTGCGACTCTTCCAAGGGCCTTTG
CTCCCGGACAAGCGCCTTTTATTTTATTTCCTTCGGGTCGTGTTCTCCTT
GATCTCGGCCAGCTCCGAAGCCACCTTTGTCGATGCCGTCACCCGGCGCT
TCGGTGCCCGCCCCGGATTTTTGACCTTCGCGCTCCTCCTCACGTCTGCG
GGGATGTTCCAAGCCTCCCCCGCCCTTCTCCCCTCCAGCGCGGCCAGCAA
TTTCGTCATGGTGACCACGGCTTGTTGGCTGTCGCGTCGGTACGCATGGG
CCACGCTGGCCGCCGTCACTGCCGTCGTGGGCCTGGGTTGGCCCTTTGTG
GCACTCCTCTTCCTCCCCCTGGCGCTGCACACGCTCTACGAGGCCGTGTC
CCACAGTCCCGGTCCGGGTTTTGCCCGGCAATGTCGCCAGGGCTTCCTCT
ATGTCCTGTCCTTGGGGGTAGCGGCCCTGGTCCTCGTCCTTCCCCCCGTC
CTGCTCGTGGACGGCTTCTTTTACCGTCGCTGTGTGCTCCCAGTCTGGAG
CATCCTTCGCTATAACCTGGGAGGGGCCGCGGTAGGCGCAGACGATACTC
TTTACGGAGTAGAACCCTGGTCTTTTTATTTGAAAAATTTGCTCCTAAAT
TTCAATGTGGTGCTGCCCCTGGTCCTCCTTTTGCCTTTCCTCCTCCTCCT
CGTCCCCCCGCCCGCGTGGCCCTCTGCGGGAAGAGGGACTTCCTTCCTCT
TTGTCGCCCCTGCGTATTTATGGTTAGGCGTCATGACCACGCGTCCTCAC
AAAGAGGAACGGTTCCTTTTCCCCATCTACCCCCTGTTAGCCTTGGGCGG
GGCCCTCTCCTTGCACGTCGTGGTGGGCTCCATGGACCGATGCCTGACAA
AGGCGGCACCGCTGGCAGTCGCCTCCGCCAAGGGCAACAAAGGCGGGGGT
AGAAAACGGAACGGTCGCGACAAAGGTCCGGAACAGGAGGGTCCACCTCG
CCCGCCTCTCGCTGGTCTCCTACACCGCCTTGCTCACATGGCTGTCCGAG
GAATGATGCCTCTCGCCCTCCTCCTCCATGCCCTCCTTTCCCTCTCCCGC
GCGGTTTCGATGACCCAAAATTTTTCCGCACCCCTCCGTCTCTTCGACGA
TTTTTCCAAGCACCAACGGGCAGAGTATTTCAAGGCGGCGGCGCCCGTGG
CTGCATCGAAATCTGCCGATCCCTCTCCCGATCCCTCCCCGCCTCCGGTG
CGGCCGGCCCGTCTCTGTCTGGGCGCCGAATGGTACCGATTCCCTTCTTC
GTTTTTCCTACCCCATGCCCACGTCCATCTTGCGTTCGTTCGCGCCGGCT
TTGGGGGCCAACTCCCACAGCCATTTCGAGCCGAAAACGGGACATGGGCC
CCTCCCTTGCAAGCCTTCAACGCGCACAATCTGGAAGAGAAGGCCCGCTA
CGTCCCCATCCACTCCTGCCGTTACTTGGTGGAGCTCTTTCCTCCCGCGC
CGGGAGGAGTCAGGGACCAGGGGGTTCCGGAGCCGTCCACGGGAGCGGCC
GGAGAAGGAGACAGCAAGGAGCGAGCACGTGCCCAAGAAGAGGCTACCTC
CGAAGACGAACGGATCGTACACGATGTAGAATGGATAGACCGGCGGCTTC
GGGAGCTGGGGGAGGCTCGACCAGTGGCCTGGCGGATTCTTCGGCACTAC
CCTTTGTTGGATAAAGCTTTATCGCCCTCGCCATGGCGTGCTTTCTGGGT
CCCCTTCGGAGGGGCGTCGCGTTTGCATTACGGAGCATTCACTTTGCTTG
AGCGAGAGGAAGAAGATGACTTTGATCCCGGTCCTTGGTCGGAGCTGGGA
TTTATCCAATAA
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protein sequence of rna1225

>rna1225-protein ID=rna1225-protein|Name=rna1225|organism=Nannochloropsis gaditana|type=polypeptide|length=71bp
MFTHLLSTTRSHRDRFRPQQKDDAVAAALLPGIHQIVSRSLATLLLQYFK
GNPSLHTYVPRDNHAPFSAKS
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mRNA from alignment at CM002457.1:101484..101699-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>rna1225 ID=rna1225|Name=rna1225|organism=Nannochloropsis gaditana|type=mRNA|length=216bp|location=Sequence derived from alignment at CM002457.1:101484..101699- (Nannochloropsis gaditana)
ATGTTTACACATCTCCTTTCCACGACACGATCGCACAGAGATAGGTTTCG
TCCCCAACAAAAAGACGACGCGGTCGCTGCCGCCTTGTTGCCAGGAATAC
ATCAAATTGTGTCAAGGAGTTTAGCTACGCTGCTGCTTCAGTACTTCAAG
GGAAACCCCTCTCTGCATACTTACGTTCCGCGCGATAACCATGCGCCGTT
CAGCGCGAAGAGCTGA
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Coding sequence (CDS) from alignment at CM002457.1:101484..101699-

>rna1225 ID=rna1225|Name=rna1225|organism=Nannochloropsis gaditana|type=CDS|length=216bp|location=Sequence derived from alignment at CM002457.1:101484..101699- (Nannochloropsis gaditana)
ATGTTTACACATCTCCTTTCCACGACACGATCGCACAGAGATAGGTTTCG
TCCCCAACAAAAAGACGACGCGGTCGCTGCCGCCTTGTTGCCAGGAATAC
ATCAAATTGTGTCAAGGAGTTTAGCTACGCTGCTGCTTCAGTACTTCAAG
GGAAACCCCTCTCTGCATACTTACGTTCCGCGCGATAACCATGCGCCGTT
CAGCGCGAAGAGCTGA
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Synonyms
Publications