rna1223, rna1223 (mRNA) Nannochloropsis gaditana

Overview
Namerna1223
Unique Namerna1223
TypemRNA
OrganismNannochloropsis gaditana (N. gaditana B-31)
Sequence length1630
Alignment locationCM002457.1:97643..98817 +

Link to JBrowse

Properties
Property NameValue
Producthypothetical protein
Orig transcript idgnl|cribi|Naga_100083g13.6781.mrna
Orig protein idgnl|cribi|Naga_100083g13.6781
GbkeymRNA
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
CM002457.1supercontigCM002457.1:97643..98817 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
Naga_100083g13gene1178Nannochloropsis gaditana (N. gaditana B-31)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
rna1223rna1223-proteinNannochloropsis gaditana (N. gaditana B-31)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
EWM29454.1cds1222Nannochloropsis gaditana (N. gaditana B-31)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>rna1223 ID=rna1223|Name=rna1223|organism=Nannochloropsis gaditana|type=mRNA|length=1630bp
CTGTCGCGTGCTATCGTAGTTTTCCCCCCCCCGAAGTCATGCGCGTGCGT
ACAAACCGCCTCCTGCGCTGTGCAAACTATCTCTGTCTTTTGTCACATAA
CGATCATTGAATTACGTGTTCTGGCCTGGTTTCTGGCTGTTGGTGTGGGA
TGGCCGCCCTGCCCGTTTCCTGCTCGCAACGACCCTCCACAACGGCTCCA
GTTCAACAACCTTATGCCTATCTTTTTCCCGTGCCTTTTCTCCACCGTAC
CACCCGCGTGCCACATACCACATGCTCATGGTGTACACAATATACAATTC
TTTACAGACACGACCGATCTTTGAAGTCTTTTCACCATAATGGCCATCAA
GAAGTCCGTCCCTACCGCTGCCCGTGCCGCCCCGGCCAAGTCTGCGGCCA
AAAAAGCCAAGGTGGCTCCTAAGGCTGCGAAGCCTGCTGGGAAACGGGGT
CGCCCGGCGAGCGCTGCTAAGAAAGCTGCCAAACCCGCCAGCAAACCTGC
GTCAAAGCGTAAACCTGTGGCAAAGGCTTTGCCAGCGGTGGCGGCGCCCA
AGCCGGCCGCAAAAGCTGCCCCCAAGCCGGCGCCCAAGGCTGTCAAGAAG
AGCAAACCCGCCCCCAAGAAGACCAAGCCGGCGGTGAAGAAGACTAAGCC
CGTGGCGAAAAAAGCGACTCCTAAGGCCGCCGCGAAGAAGAGCAAGCCCG
CTGCGAAGAAGAGCAAGCCCGCCGCGAAGAAGAGCAAGCCCGCCGCGAAG
AAGAGCAAGCCCGCTGCGAAGAAGGCTTTGCCCGTTATCAAGAAGGCCGC
CAAGCCCGCGGCTAAGGTGGCAAAGGGGAAGAAAGCACCCGCTAAAAAGG
CGAAGGCCACAAAGAAGTAAATTGTCGAGCTGGCGTGGCGTCAAGTGGCG
AGAATTAACGGACACGTGCTCCCGAAGTGTGTATGAGTAATTTTCCGGGG
GATTGGCCTGAGTAAAACACGTAACAAAATTTATGGAGAGGGCAGATGTT
GAAAAATGACAGGGAAAGGGGGGAGAGAATGAGGATCAAAGCTTTCCTGC
AAAAACCTAAAAAAAAGGAGCTTTTGAATCACACGTGACGCAAGACCAAG
AAGAGCAACGGAAACAGGACTGGCAGCTGGAATCCAGATATTGGGCCTTG
AATTTGACAGAGCGCATATCATTGTTGGTGGAAATATATATTCACACAGA
TGGATTCTCTCTTTTAACATCCTGAAAGCTTATTGTACCCATTGTGCTAT
CACCTGCCCCATCCACGGAAAGGATCGATACACTTTGCAGCTTTCATTAC
ACTTTCATCCCAATGATTCAAACAAAGCGACAAGGAAGAAAAAGACACCA
AATCCTTGCCTGAAACTTATCCTCGTGAAGTTGCGGACGCTCAGAATGCA
TCTCTGTCCTCTGTTGCTTGACAAACTCTAATGCCACTTCTACTTCTTTT
TTTTCAATCGTGCTCTTGCCAAGGAATACGCCTGCACTTGAAAGAGCAAG
AAATGGAAAGATAGGGCGAAAAATGACTACTTTCTACCCTGCAAATATAT
AATGCATGGTGATTACCGTATTTTTAGGTGGAATGTCAAAAAGTCATATT
ATGACGTCACGCTTTATTCGTTTAAAGATC
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protein sequence of rna1223

>rna1223-protein ID=rna1223-protein|Name=rna1223|organism=Nannochloropsis gaditana|type=polypeptide|length=300bp
MLLRNTSFAVTLVPVITAWMAGLAESFIIPSRVVTRSSALSMSLGHPEQA
PSTATRGGYLGAGGFLFASSFLLSPSPSWARNLPSGPSKAELLEKTRAKD
SEDPVEKKARLAALRKERLERQRQLDAEEEARKKDPNRKEVDIDANLRAS
YYYPTAQKRYLPRVKAAADALPAAREALQAGEWEKVESYAAKEADNAALP
LKLYASSLTGQGLSLDVSYVKVLSQQGDVYGKELENFKKTVKSRDTTKAL
TSLGKMESALVLYRKTARIDKEDGGVGEFPTDTKLGASFGNNNPTLYKKK
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mRNA from alignment at CM002457.1:97643..98817+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>rna1223 ID=rna1223|Name=rna1223|organism=Nannochloropsis gaditana|type=mRNA|length=1175bp|location=Sequence derived from alignment at CM002457.1:97643..98817+ (Nannochloropsis gaditana)
TGTCCCCCCATTCCCAAAGCTTATTACCCCACCGTCAACGCACAGGCAAA
CCATTAGAAGTACAGCCCCTTCGAAAATATGTTGTTGCGGAATACATCAT
TTGCAGTGACCCTGGTACCGGTGATAACGGCATGGATGGCGGGTCTGGCT
GAGTCGTTCATTATTCCGTCGCGTGTCGTAACCCGATCGTCAGGTAAGCC
AGAAGATGAGATGACAACAAGCtaaagccctcctcctgacaAAGTCTCCG
CAATCTACCTTGCTTTTAAATCATTAAGCCCTAAGTATGTCACTGGGGCA
CCCGGAGCAGGCGCCATCGACGGCAACACGTGGTGGGTACCTCGGAGCCG
GAGGATTTTTGTTCGCCTCCtcgtttctcctctccccatctcccAGCTGG
GCACGCAATTTACCTTCCGGACCTAGCAAGGCCGAATTACTGGAAAAAAC
CCGGGCTAAGGACTCTGAGGATCCTGTCGAAAAGAAAGCCCGGCTTGCGG
CCTTGCGAAAAGAACGCTTGGAGCGTCAACGGCAACTCGatgcggaagag
gaggctcgTAAAAAGGATCCGAACCGTAAAGAGGTAGATATCGACGCAAA
CTTGCGAGCTTCTTACTATTACCCCACCGCTCAAAAACGCTATCTTCCCC
GTGTCAAAGCTGCGGCAGATGCGTTGCCAGCGGCTCGTGAAGCACTCCAA
GccggggagtgggagaaggTTGAGAGTTATGCAGCCAAGGAAGCCGACAA
TGCCGCGCTCCCCTTGAAACTGTATGCATCCTCTCTGACAGGACAAGGGC
TATCGTTGGACGTCTCGTACGTCAAAGTGTTGAGCCAACAAGGTGACGTG
TATGGGAAGGAGCTAGAGAACTTCAAGAAAACGGTGAAAAGCAGGGATAC
GACTAAGGCCTTGACGTCGCTAGGGAAGATGGAGTCCGCCCTGGTACTCT
ACCGTAAGACAGCCAGGATTGACAAAGAAGACGGCGGTGTAGGAGAATTC
CCAACGGACACCAAGCTGGGTGCCAGCTTCGGGAACAATAACCCTACCCT
GTACAAGAAGAAGTAATTAGCGTTGGAGCTTTGGGAGGCGCGCAATAGGG
ATGTGGaagagcgggggggatgtCACATATCGCATTAAGACCCGACTTAA
AGAAAATCGTCATGACTGGGCAGCC
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Coding sequence (CDS) from alignment at CM002457.1:97643..98817+

>rna1223 ID=rna1223|Name=rna1223|organism=Nannochloropsis gaditana|type=CDS|length=1806bp|location=Sequence derived from alignment at CM002457.1:97643..98817+ (Nannochloropsis gaditana)
ATGTTGTTGCGGAATACATCATTTGCAGTGACCCTGGTACCGGTGATAAC
GGCATGGATGGCGGGTCTGGCTGAGTCGTTCATTATTCCGTCGCGTGTCG
TAACCCGATCGTCAGCCCTAAGTATGTCACTGGGGCACCCGGAGCAGGCG
CCATCGACGGCAACACGTGGTGGGTACCTCGGAGCCGGAGGATTTTTGTT
CGCCTCCtcgtttctcctctccccatctcccAGCTGGGCACGCAATTTAC
CTTCCGGACCTAGCAAGGCCGAATTACTGGAAAAAACCCGGGCTAAGGAC
TCTGAGGATCCTGTCGAAAAGAAAGCCCGGCTTGCGGCCTTGCGAAAAGA
ACGCTTGGAGCGTCAACGGCAACTCGatgcggaagaggaggctcgTAAAA
AGGATCCGAACCGTAAAGAGGTAGATATCGACGCAAACTTGCGAGCTTCT
TACTATTACCCCACCGCTCAAAAACGCTATCTTCCCCGTGTCAAAGCTGC
GGCAGATGCGTTGCCAGCGGCTCGTGAAGCACTCCAAGccggggagtggg
agaaggTTGAGAGTTATGCAGCCAAGGAAGCCGACAATGCCGCGCTCCCC
TTGAAACTGTATGCATCCTCTCTGACAGGACAAGGGCTATCGTTGGACGT
CTCGTACGTCAAAGTGTTGAGCCAACAAGGTGACGTGTATGGGAAGGAGC
TAGAGAACTTCAAGAAAACGGTGAAAAGCAGGGATACGACTAAGGCCTTG
ACGTCGCTAGGGAAGATGGAGTCCGCCCTGGTACTCTACCGTAAGACAGC
CAGGATTGACAAAGAAGACGGCGGTGTAGGAGAATTCCCAACGGACACCA
AGCTGGGTGCCAGCTTCGGGAACAATAACCCTACCCTGTACAAGAAGAAG
TAAATGTTGTTGCGGAATACATCATTTGCAGTGACCCTGGTACCGGTGAT
AACGGCATGGATGGCGGGTCTGGCTGAGTCGTTCATTATTCCGTCGCGTG
TCGTAACCCGATCGTCAGCCCTAAGTATGTCACTGGGGCACCCGGAGCAG
GCGCCATCGACGGCAACACGTGGTGGGTACCTCGGAGCCGGAGGATTTTT
GTTCGCCTCCtcgtttctcctctccccatctcccAGCTGGGCACGCAATT
TACCTTCCGGACCTAGCAAGGCCGAATTACTGGAAAAAACCCGGGCTAAG
GACTCTGAGGATCCTGTCGAAAAGAAAGCCCGGCTTGCGGCCTTGCGAAA
AGAACGCTTGGAGCGTCAACGGCAACTCGatgcggaagaggaggctcgTA
AAAAGGATCCGAACCGTAAAGAGGTAGATATCGACGCAAACTTGCGAGCT
TCTTACTATTACCCCACCGCTCAAAAACGCTATCTTCCCCGTGTCAAAGC
TGCGGCAGATGCGTTGCCAGCGGCTCGTGAAGCACTCCAAGccggggagt
gggagaaggTTGAGAGTTATGCAGCCAAGGAAGCCGACAATGCCGCGCTC
CCCTTGAAACTGTATGCATCCTCTCTGACAGGACAAGGGCTATCGTTGGA
CGTCTCGTACGTCAAAGTGTTGAGCCAACAAGGTGACGTGTATGGGAAGG
AGCTAGAGAACTTCAAGAAAACGGTGAAAAGCAGGGATACGACTAAGGCC
TTGACGTCGCTAGGGAAGATGGAGTCCGCCCTGGTACTCTACCGTAAGAC
AGCCAGGATTGACAAAGAAGACGGCGGTGTAGGAGAATTCCCAACGGACA
CCAAGCTGGGTGCCAGCTTCGGGAACAATAACCCTACCCTGTACAAGAAG
AAGTAA
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Synonyms
Publications