EWM29454.1, cds1222 (CDS) Nannochloropsis gaditana

Overview
NameEWM29454.1
Unique Namecds1222
TypeCDS
OrganismNannochloropsis gaditana (N. gaditana B-31)
Alignment locationCM002457.1:97721..97835 +
Alignment locationCM002457.1:97921..98708 +

Link to JBrowse

Properties
Property NameValue
Protein idEWM29454.1
Producthypothetical protein
Orig transcript idgnl|cribi|Naga_100083g13.6781.mrna
GbkeyCDS
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
CM002457.1supercontigCM002457.1:97721..97835 +
CM002457.1supercontigCM002457.1:97921..98708 +
Analyses
This CDS is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST analysis for N. gaditana B-312020-04-07
InterPro analysis for N. gaditana B-312020-04-06
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
Homology
BLAST of EWM29454.1 vs. NCBI_GenBank
Match: gi|585111990|gb|EWM29454.1| (hypothetical protein Naga_100083g13 [Nannochloropsis gaditana])

HSP 1 Score: 603.208 bits (1554), Expect = 0.000e+0
Identity = 300/300 (100.00%), Postives = 300/300 (100.00%), Query Frame = 0
Query:    1 MLLRNTSFAVTLVPVITAWMAGLAESFIIPSRVVTRSSALSMSLGHPEQAPSTATRGGYLGAGGFLFASSFLLSPSPSWARNLPSGPSKAELLEKTRAKDSEDPVEKKARLAALRKERLERQRQLDAEEEARKKDPNRKEVDIDANLRASYYYPTAQKRYLPRVKAAADALPAAREALQAGEWEKVESYAAKEADNAALPLKLYASSLTGQGLSLDVSYVKVLSQQGDVYGKELENFKKTVKSRDTTKALTSLGKMESALVLYRKTARIDKEDGGVGEFPTDTKLGASFGNNNPTLYKKK 300
            MLLRNTSFAVTLVPVITAWMAGLAESFIIPSRVVTRSSALSMSLGHPEQAPSTATRGGYLGAGGFLFASSFLLSPSPSWARNLPSGPSKAELLEKTRAKDSEDPVEKKARLAALRKERLERQRQLDAEEEARKKDPNRKEVDIDANLRASYYYPTAQKRYLPRVKAAADALPAAREALQAGEWEKVESYAAKEADNAALPLKLYASSLTGQGLSLDVSYVKVLSQQGDVYGKELENFKKTVKSRDTTKALTSLGKMESALVLYRKTARIDKEDGGVGEFPTDTKLGASFGNNNPTLYKKK
Sbjct:    1 MLLRNTSFAVTLVPVITAWMAGLAESFIIPSRVVTRSSALSMSLGHPEQAPSTATRGGYLGAGGFLFASSFLLSPSPSWARNLPSGPSKAELLEKTRAKDSEDPVEKKARLAALRKERLERQRQLDAEEEARKKDPNRKEVDIDANLRASYYYPTAQKRYLPRVKAAADALPAAREALQAGEWEKVESYAAKEADNAALPLKLYASSLTGQGLSLDVSYVKVLSQQGDVYGKELENFKKTVKSRDTTKALTSLGKMESALVLYRKTARIDKEDGGVGEFPTDTKLGASFGNNNPTLYKKK 300          
BLAST of EWM29454.1 vs. NCBI_GenBank
Match: gi|553192560|ref|XP_005855597.1| (hypothetical protein NGA_0640000 [Nannochloropsis gaditana CCMP526] >gi|422293460|gb|EKU20760.1| hypothetical protein NGA_0640000 [Nannochloropsis gaditana CCMP526])

HSP 1 Score: 517.694 bits (1332), Expect = 0.000e+0
Identity = 258/259 (99.61%), Postives = 258/259 (99.61%), Query Frame = 0
Query:   42 MSLGHPEQAPSTATRGGYLGAGGFLFASSFLLSPSPSWARNLPSGPSKAELLEKTRAKDSEDPVEKKARLAALRKERLERQRQLDAEEEARKKDPNRKEVDIDANLRASYYYPTAQKRYLPRVKAAADALPAAREALQAGEWEKVESYAAKEADNAALPLKLYASSLTGQGLSLDVSYVKVLSQQGDVYGKELENFKKTVKSRDTTKALTSLGKMESALVLYRKTARIDKEDGGVGEFPTDTKLGASFGNNNPTLYKKK 300
            MSLGHPEQAPSTATRGGYLGAGGFLFASSFLLSPSPSWARNLPSGPSKAELLEKTRAKDSEDPVEKKARLAALRKERLERQRQLDAEEEARKKDPNRKEVDIDANLRASYYYPTAQKRYLPRVKAAADALPAAREALQAGEWEKVESYAAKEADNAALPLKLYASSLTGQGLSLDVSYVKVLSQQGDVYGKELENFKK VKSRDTTKALTSLGKMESALVLYRKTARIDKEDGGVGEFPTDTKLGASFGNNNPTLYKKK
Sbjct:    1 MSLGHPEQAPSTATRGGYLGAGGFLFASSFLLSPSPSWARNLPSGPSKAELLEKTRAKDSEDPVEKKARLAALRKERLERQRQLDAEEEARKKDPNRKEVDIDANLRASYYYPTAQKRYLPRVKAAADALPAAREALQAGEWEKVESYAAKEADNAALPLKLYASSLTGQGLSLDVSYVKVLSQQGDVYGKELENFKKAVKSRDTTKALTSLGKMESALVLYRKTARIDKEDGGVGEFPTDTKLGASFGNNNPTLYKKK 259          
BLAST of EWM29454.1 vs. NCBI_GenBank
Match: gi|873242457|emb|CEL91696.1| (unnamed protein product [Vitrella brassicaformis CCMP3155])

HSP 1 Score: 164.081 bits (414), Expect = 1.398e-45
Identity = 103/233 (44.21%), Postives = 150/233 (64.38%), Query Frame = 0
Query:   68 ASSFLLSPSPSWARNLPSGPSKAELLEKT-RAKDSEDPVEKKARLAALRKERLERQRQLDAEEEARKKDPNRKEVDIDANLRASYYYPTAQKRYLPRVKAAADALPAAREALQAGEWEKVESYAAKEADNAALPLKLYASSLTGQGLSLDVSYVKVLSQQGDVYGKELENFKKTVKSRDTTKALTSLGKMESALVLYRKTARIDKEDGGVGEFPTDTKLGASFGNNNPTLYKK 299
            A+ FLLS  P    +     +K EL++KT R K  E+   +K  LA  ++ERLE+Q++L  EE+ R+++   +E  I+  L   Y YPTA+KRYLPRVKA AD +      ++AG+W KV+++A   A+ A LPLKLYASSL GQGL+   S++KV++++ + Y   L++F+K V  +DT  AL SL KM ++L  YR+  +ID EDGGVG   +  + G+ F NNNP LY+K
Sbjct:   19 AAPFLLSLIPLADAD---ALAKDELVKKTMREKTPEEIEAEKEALAQAKRERLEKQKRL-VEEQRRRREEGEQEEGIEPTLYVQYTYPTARKRYLPRVKALADEIGGIAPLVEAGKWGKVKTFAEGTAEGARLPLKLYASSLAGQGLAQSASFIKVMNKEAEEYSASLDSFQKAVNKKDTNTALVSLAKMSTSLSTYRREGKIDTEDGGVGRVESQPR-GSGFFNNNPGLYQK 246          
BLAST of EWM29454.1 vs. NCBI_GenBank
Match: gi|551679522|ref|XP_005842513.1| (hypothetical protein GUITHDRAFT_149817, partial [Guillardia theta CCMP2712] >gi|428186683|gb|EKX55533.1| hypothetical protein GUITHDRAFT_149817, partial [Guillardia theta CCMP2712])

HSP 1 Score: 120.553 bits (301), Expect = 1.113e-28
Identity = 80/247 (32.39%), Postives = 136/247 (55.06%), Query Frame = 0
Query:   28 IIPSRVVTRSSALSMSLGHPEQAPSTATRGGYLGAGGFLFASSFLLSPSPSWAR----NLPSGPSKAELLEKTRAKDSEDPVEKKARLAALRKERLERQRQLDAEEEARKKDPNRKEVDIDANLRASYYYPTAQKRYLPRVKAAADALPAAREALQAG--EWEKVESYAAKEADNAALPLKLYASSLTGQGLSLDVSYVKVLSQQGDVYGKELENFKKTVKSRDTTKALTSLGKMESALVLYRKTAR 268
            ++  +  TRSS+  MS+       +T+ R   L A   +   SFLL   P+ A+     L +     E +E           E+KAR+A  R+E  +R+++LD + +A +++    +V++ +NLR  YY+PTA+KRYLPRVK A D L    + +Q    +W+ VE +A   AD     +KLY S+L G GLS+   +++ + +  D Y ++ ++FK+ V  +D++KA++    M+SAL+ YR   +
Sbjct:   47 LVGGKGSTRSSSCKMSM------ETTSRRNVLLAAA--VTTGSFLLHADPAAAKKARSTLVAPDGTVETIE-----------ERKARIAKEREEMEKRRQELDQKAKAFEEENGPVQVEMGSNLRGDYYFPTARKRYLPRVKGAYDGLQETIQTIQEASPDWKTVEQFAKGPADVTG-AMKLYVSALGGGGLSIQSKFMEAMGKAADEYDRDYKDFKQAVSKKDSSKAVSIAKSMQSALLAYRSAGK 273          
BLAST of EWM29454.1 vs. NCBI_GenBank
Match: gi|219117608|ref|XP_002179596.1| (predicted protein [Phaeodactylum tricornutum CCAP 1055/1] >gi|217408649|gb|EEC48582.1| predicted protein [Phaeodactylum tricornutum CCAP 1055/1])

HSP 1 Score: 109.768 bits (273), Expect = 1.149e-24
Identity = 55/142 (38.73%), Postives = 86/142 (60.56%), Query Frame = 0
Query:  140 EVDIDANLRASYYYPTAQKRYLPRVKAAADALPAAREALQAGEWEKVESYAAKEADNAALPLKLYASSLTGQGLSLDVSYVKVLSQQGDVYGKELENFKKTVKSRDTTKALTSLGKMESALVLYRKTARIDKEDGGVGEFPT 281
            E D++ NLRA+YYYPT +KRYLPR+K   DA+P A +A+  G+W  V  +A K AD+  LP++LY SSL G G ++ V++ K +++  D + K  +   K    +D   +  +L  + +AL  YR   ++   DGG G+ P+
Sbjct:   98 ESDVEPNLRANYYYPTNKKRYLPRIKRCNDAIPDAADAIGTGDWLVVTDFANKIADDTILPMRLYTSSLVGGGTNVKVAFAKEMNKAADDFEKAQKKLVKATAKQDREASSVALEDLATALQTYRVAGKLLGPDGG-GDIPS 238          
BLAST of EWM29454.1 vs. NCBI_GenBank
Match: gi|1189389965|gb|OSX76934.1| (hypothetical protein BU14_0167s0009 [Porphyra umbilicalis])

HSP 1 Score: 108.997 bits (271), Expect = 7.299e-24
Identity = 71/187 (37.97%), Postives = 98/187 (52.41%), Query Frame = 0
Query:  119 LERQRQLDAEEEARKKDPNRKEVDIDA---NLRASYYYPTAQKRYLPRVKAAADALPAAREALQAGEWEKVESYAAKEA--DNAALPLKLYASSLTGQGLSLDVSYVKVLSQQGDVYGKELENFKKTVKSRDTTKALTSLGKMESALVLYRKTARIDKEDGGVGEFPTDTKLGASFGNNNPTLYKKK 300
            LE   +  AE EA       ++   DA    LR SYY PTA+ RYLPRV+ AA++L  A  A   G W  + + AA      +AA P++LYASSL GQGLS+     K +   G+ Y   +    K  K R       +L  + +A+  YR+  R++  D G+ E  T  K+GA+FGNNNP LY + 
Sbjct:   60 LEAVAKATAEREAAAGGGAPRDAATDAIEPTLRGSYYSPTAKLRYLPRVRRAAESLDEAVVAAADGNWAALAALAAPTGALGDAAAPMRLYASSLAGQGLSIASRAAKEMDAAGEAYAGAIAKLAKGAKKRSPGTVGPALDDLRAAMGAYRRAGRMEA-DWGLSEITTTQKVGAAFGNNNPALYARN 245          
BLAST of EWM29454.1 vs. NCBI_GenBank
Match: gi|1210524180|dbj|GAX16909.1| (hypothetical protein FisN_5Hh286 [Fistulifera solaris])

HSP 1 Score: 106.301 bits (264), Expect = 1.242e-23
Identity = 59/147 (40.14%), Postives = 88/147 (59.86%), Query Frame = 0
Query:  136 PNRK-EVDIDANLRASYYYPTAQKRYLPRVKAAADALPAAREALQAGEWEKVESYAAKEADNAALPLKLYASSLTGQGLSLDVSYVKVLSQQGDVYGKELENFKKTVKSRDTTKALTSLGKMESALVLYRKTARIDKEDGGVGEFPT 281
            P +K E  I+ NLR++YYYPT +KRYLPR++  ++ +P   + L + +WE V+S+A   AD+  LPLKLY SSLTG G ++ VSY K +    D +    +   K +  +DT  A  +L  M  AL  YR  A + K+D  +G+ P+
Sbjct:   71 PQKKSESVIEPNLRSNYYYPTNKKRYLPRIQKCSNMIPNVADLLGSQDWEAVDSFAKTVADDTILPLKLYTSSLTGGGTNVKVSYTKDMYACADQFESNQKRLLKAISKKDTALATEALEGMSEALSKYRTVAGL-KDD--MGDLPS 214          
BLAST of EWM29454.1 vs. NCBI_GenBank
Match: gi|224004132|ref|XP_002295717.1| (predicted protein [Thalassiosira pseudonana CCMP1335] >gi|209585749|gb|ACI64434.1| predicted protein [Thalassiosira pseudonana CCMP1335])

HSP 1 Score: 107.071 bits (266), Expect = 1.693e-23
Identity = 53/150 (35.33%), Postives = 87/150 (58.00%), Query Frame = 0
Query:  132 RKKDPNRKEVDIDANLRASYYYPTAQKRYLPRVKAAADALPAAREALQAGEWEKVESYAAKEADNAALPLKLYASSLTGQGLSLDVSYVKVLSQQGDVYGKELENFKKTVKSRDTTKALTSLGKMESALVLYRKTARIDKEDGGVGEFPT 281
            R  +  + E +++ NLR++YYYPT + RYLPR+K  +D++P    A+   +W+ V  +A   AD+  LP+KLY SSLTG G ++ V + K +      + K      K+V  +D +KA  +L  M  A++ YR + ++   DGG G+ P+
Sbjct:  109 RAVNKGKAESNMEPNLRSNYYYPTNKVRYLPRIKKCSDSIPQVAIAIGNEDWDSVRDFATVVADDTVLPMKLYVSSLTGGGTNVKVGFAKEMMAAAKTFEKNQSLLVKSVDKKDASKASAALEAMSEAMLAYRTSGKLLGPDGG-GDIPS 257          
BLAST of EWM29454.1 vs. NCBI_GenBank
Match: gi|1210515681|dbj|GAX25204.1| (hypothetical protein FisN_5Lh286 [Fistulifera solaris])

HSP 1 Score: 105.916 bits (263), Expect = 1.942e-23
Identity = 59/147 (40.14%), Postives = 88/147 (59.86%), Query Frame = 0
Query:  136 PNRK-EVDIDANLRASYYYPTAQKRYLPRVKAAADALPAAREALQAGEWEKVESYAAKEADNAALPLKLYASSLTGQGLSLDVSYVKVLSQQGDVYGKELENFKKTVKSRDTTKALTSLGKMESALVLYRKTARIDKEDGGVGEFPT 281
            P +K E  I+ NLR++YYYPT +KRYLPR++  ++ +P   + L + +WE V+S+A   AD+  LPLKLY SSLTG G ++ VSY K +    D +    +   K +  +DT  A  +L  M  AL  YR  A + K+D  +G+ P+
Sbjct:   71 PQKKSESVIEPNLRSNYYYPTNKKRYLPRIQKCSNMIPNVADLLGSQDWEAVDSFAKTVADDTILPLKLYTSSLTGGGTNVKVSYTKDMYVCADQFETNQKRLLKAITKKDTALATEALEGMSEALSKYRTVAGL-KDD--MGDLPS 214          
BLAST of EWM29454.1 vs. NCBI_GenBank
Match: gi|397568777|gb|EJK46337.1| (hypothetical protein THAOC_34998 [Thalassiosira oceanica])

HSP 1 Score: 75.8702 bits (185), Expect = 2.315e-12
Identity = 45/148 (30.41%), Postives = 71/148 (47.97%), Query Frame = 0
Query:  134 KDPNRKEVDIDANLRASYYYPTAQKRYLPRVKAAADALPAAREALQAGEWEKVESYAAKEADNAALPLKLYASSLTGQGLSLDVSYVKVLSQQGDVYGKELENFKKTVKSRDTTKALTSLGKMESALVLYRKTARIDKEDGGVGEFPT 281
            KD  +   +++ NLR++YYYPT + RYLPR+K  +DA+P   EA+   +WE V  +A                   G G ++ V +   ++     + K      K V  +D  K   +L  M  AL+ YR + R+   DGG G+ P+
Sbjct:  106 KDKGKAASNMEPNLRSNYYYPTNKVRYLPRIKKCSDAIPGVAEAIGREDWEAVNDFAKSR----------------GGGTNVKVGFAGEMTAAAKKFEKNQALLVKAVSKKDVAKTSDALEGMSEALLAYRTSGRLLGPDGG-GDIPS 236          
The following BLAST results are available for this feature:
BLAST of EWM29454.1 vs. NCBI_GenBank
Analysis Date: 2020-04-07 (BLAST analysis for N. gaditana B-31)
Total hits: 10
Match NameE-valueIdentityDescription
gi|585111990|gb|EWM29454.1|0.000e+0100.00hypothetical protein Naga_100083g13 [Nannochlorops... [more]
gi|553192560|ref|XP_005855597.1|0.000e+099.61hypothetical protein NGA_0640000 [Nannochloropsis ... [more]
gi|873242457|emb|CEL91696.1|1.398e-4544.21unnamed protein product [Vitrella brassicaformis C... [more]
gi|551679522|ref|XP_005842513.1|1.113e-2832.39hypothetical protein GUITHDRAFT_149817, partial [G... [more]
gi|219117608|ref|XP_002179596.1|1.149e-2438.73predicted protein [Phaeodactylum tricornutum CCAP ... [more]
gi|1189389965|gb|OSX76934.1|7.299e-2437.97hypothetical protein BU14_0167s0009 [Porphyra umbi... [more]
gi|1210524180|dbj|GAX16909.1|1.242e-2340.14hypothetical protein FisN_5Hh286 [Fistulifera sola... [more]
gi|224004132|ref|XP_002295717.1|1.693e-2335.33predicted protein [Thalassiosira pseudonana CCMP13... [more]
gi|1210515681|dbj|GAX25204.1|1.942e-2340.14hypothetical protein FisN_5Lh286 [Fistulifera sola... [more]
gi|397568777|gb|EJK46337.1|2.315e-1230.41hypothetical protein THAOC_34998 [Thalassiosira oc... [more]
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Relationships

This CDS is a part of the following mRNA feature(s):

Feature NameUnique NameSpeciesType
rna1223rna1223Nannochloropsis gaditana (N. gaditana B-31)mRNA


Sequences
Synonyms
Publications