rna1222, rna1222 (mRNA) Nannochloropsis gaditana

Overview
Namerna1222
Unique Namerna1222
TypemRNA
OrganismNannochloropsis gaditana (N. gaditana B-31)
Sequence length2132
Alignment locationCM002457.1:95640..97421 +

Link to JBrowse

Properties
Property NameValue
ProductHistone H5
Orig transcript idgnl|cribi|Naga_100083g15.6775.mrna
Orig protein idgnl|cribi|Naga_100083g15.6775
GbkeymRNA
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
CM002457.1supercontigCM002457.1:95640..97421 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
Naga_100083g15gene1177Nannochloropsis gaditana (N. gaditana B-31)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
rna1222rna1222-proteinNannochloropsis gaditana (N. gaditana B-31)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
EWM29448.1cds1221Nannochloropsis gaditana (N. gaditana B-31)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>rna1222 ID=rna1222|Name=rna1222|organism=Nannochloropsis gaditana|type=mRNA|length=2132bp
ACACTGCCACAGCGGGGGCAGGCTTGCTGGATATAAAGCGGTCATGAAAT
TCGCACCAATAAGTGTCCCATTGACGAATCTAAGGGATTTCTAGCGATGA
TGAATTGTTTATATCGCTGGTACACAGCGTAGACCTCAGCCTGCATTACA
CCCAAAAGGGACGGAATACAGCAATTTCCTCGCAAACCAACCCGGAACAA
GAAAGGTGTCATGGACACAATAACCAATGCCTATGGGAGTGACAGCGACA
CGGAAAGCACGCCCACAGGAGTGTCGTCTTCTGCTCCGACATCCACCCTA
TCATCCTCAGTCTCCGGGCCCCCCGGCGGCCCTTATCTCGTCAATCGCTC
CGTCAACTCGGCCCCGTTTGTGAACCCTGCTTTGAAAACCGTGATGAATC
GTCCTGGTTTTATACCGCCAACGTCGCGGGAGCTCACCACCAACGTGAAG
GCTGCCACTCTACTGGCTCCAATTCAGGGACCAGAGCATCCTTTTCGTCG
GGAAATGGACTCGATGGGAGGCACGAAGCTGGCCACGGGTGGTTACAAGG
AAGACGCTGTCATGGAGAAATGGAATTTCCATGAACAATTTCATACCTTC
CACGCTCAAGGGTACGCGAGGGATGACGTGGCCGGGGGTATCATAGGGAA
TGTGCATAATTACATGCGCAAGGAAGGCCTGAGGGACCCGGCTGGTCCGA
CAGCAATAAATGCGGGCAGGGTGACAAAACCGAGCGGGAGCACAGCGTTG
GAGCCCGTGTCGCGACGGAAGCGAAAGGGCGTGGAAGAAGACGAGGATTT
GGGAGAAGAGGAGGATGGTCCGTGGGCTCCTGCAAAGGAAGAACCTGTCA
TAACACAATTGGAGGCGGGGACCTTAACCGAGGAGCAAAAGCGGCACCGG
GCAGAGCTGGCGGAGCGGAAGGCCGCCAAACACCGCGGCTACGACGAGGA
CGAGGATTTGGACCGACGGGATGAGCGAAAAGTGGCGCATTTGTTGCCTC
CGCGCCATGACCGGGACACGGTAGCCTCGGAGCCCACCACGCAGTTTCAC
GGTAAAGGCGAGAGTGACTACCAGGGACGGTCCTGGGTGGAGCCACCGGG
CGGGCTTCGGCCCGTGGAGACCGACCATGCTTGTTATTTGCCGAAGCGGT
GCGTGCATCGTTATACGGGCCATGGAAAAGGCGTGCAAGCCATCGAGTTC
TTCCCGGGCACCGGGCACCTCCTCCTCTCTGCATCCTTGGACGGTACCTG
CAAAGTCTGGTCCGTCTACGATGAGAGGCAACTGCGACGGACTTACTCAG
GCCACACAGCTGCAGTCCGTTGCATCAATTTTAGCCCGGATGGCAGTCGC
TTCCTGAGTGGGGGCTTCGATCGTTTCCTGCGCTTGTGGGATACCGAGAC
TGGACAATGCATCTCCACCATCACCAACCGTAAGGTTCCGTACGCCGCTA
AATTCTACCCGCCCAACGACAACCTCTTCATTTTTGCCGCTTCGGACAAT
CGTCTGTACACGTACGACTGGTCCTCGGGGGAGATGGTTCAAGAATACAA
TCACCACCTGTCCGCGGTCAACACCGTCACCTTTTACGACAATAACTCCC
GCTTCGCCTCCACCTCCGACGACAAGAAAATGCTGCTGTGGGAGTGGGAC
ATTTCGGTGCCTATCAAATACATAGCCGAGCCTGGGATGCATTCAATGCC
CGCAGTGACCCCCTCGCCTGCGGGCGACTTTGTGGCGTGTCAATCGTTGG
ACAACACTATCAAAATTTTTGGTTGCCGGGATCGCTTCAAGCTCTTGCAC
AAAAAAGTCTTCAAAGGACACACCATTGCTGGATTTGCTTGTCAGCCCGC
ATTTTCTCCCAACAATCGATACTTGGCCTCTGGGGATGGGGAGGGAAAGT
TGCACTTCTGGGATTTCAAAAACACCCGGGCTTTGGCAAAATATCGGGCG
CATGACAATGGTCCGTGCATCGGCTTGGTTTGGCACCCCGTCGAAGCCTC
CATGGTTGCGTCGTGCGGGTGGGATGGCTTGATTAAATTGTGGGAATAGA
AAGGAGGTCTGGACGGGCAGCGAGTCCGGCGGCACCTCACACAGAAGCAT
TTAAGTCAAAATTAAATACAAAAACTTGAAAG
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protein sequence of rna1222

>rna1222-protein ID=rna1222-protein|Name=rna1222|organism=Nannochloropsis gaditana|type=polypeptide|length=176bp
MAIKKSVPTAARAAPAKSAAKKAKVAPKAAKPAGKRGRPASAAKKAAKPA
SKPASKRKPVAKALPAVAAPKPAAKAAPKPAPKAVKKSKPAPKKTKPAVK
KTKPVAKKATPKAAAKKSKPAAKKSKPAAKKSKPAAKKSKPAAKKALPVI
KKAAKPAAKVAKGKKAPAKKAKATKK
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mRNA from alignment at CM002457.1:95640..97421+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>rna1222 ID=rna1222|Name=rna1222|organism=Nannochloropsis gaditana|type=mRNA|length=1782bp|location=Sequence derived from alignment at CM002457.1:95640..97421+ (Nannochloropsis gaditana)
CTGTCGCGTGCTATCGTagttttcccccccccgaagtCATGCGCGTGCGT
ACAAACCGCCTCCTGCGCTGTGCAAACTATCTCTGTCTTTTGTCACATAA
CGATCATTGAATTACGTGTTCTGGCCTGGTTTCTGGCTGTTGGTGTGGGA
TGGCCGCCCTGCCCGTTTCCTGCTCGCAACGACCCTCCACAACGGCTCCA
GTTCAACAACCTTATGCCTATCTTTTTCCCGTGCCTTTTCTCCACCGTAC
CACCCGCGTGCCACATACCACATGCTCATGGTGTACACAATATACAATTC
TTTACAGACACGACCGATCTTTGAAGTCTTTTCACCATAATGGCCATCAA
GGTAAGTCTTGATACGAGAAGTGGTACGTTGAGATAAGGCGGGAAAAAGT
GACGCCCTTCCCGCGCAACTTAGGCAGGTATTTACTCgcgcctcgcctcc
ccacccctgaTGACGTCTCTCTACATACATAAAAACTGCACACGAAACAA
CAGAAGTCCGTCCCTACCGCTGCCCGTGCCGCCCCGGCCAAGTCTGCGGC
CAAAAAAGCCAAGGTGGCTCCTAAGGCTGCGAAGCCTGCTGGGAAACGGG
GTCGCCCGGCGAGCGCTGCTAAGAAAGCTGCCAAACCCGCCAGCAAACCT
GCGTCAAAGCGTAAACCTGTGGCAAAGGCTTTGCCAGCGGTGGCGGCGCC
CAAGCCGGCCGCAAAAGCTGCCCCCAAGCCGGCGCCCAAGGCTGTCAAGA
AGAGCAAACCCGCCCCCAAGAAGACCAAGCCGGCGGTGAAGAAGACTAAG
CCCGTGGCGAAAAAAGCGACTCCTAAGGCCGCcgcgaagaagagcaagcc
cgctgcgaagaagagcaagcccgccgcgaagaagagcaagcccgccgcga
agaagagcaagcccGCTGCGAAGAAGGCTTTGCCCGTTATCAAGAAGGCC
GCCAAGCCCGCGGCTAAGGTGgcaaaggggaagaaagcacCCGCTAAAAA
GGCGAAGGCCACAAAGAAGTAAATTGTCGAGCTGGCGTGGCGTCAAGTGG
CGAGAATTAACGGACACGTGCTCCCGAAGTGTGTATGAGTAATTTTCCGG
GGGATTGGCCTGAGTAAAACACGTAACAAAATTTATGGAGAGGGCAGATG
TTGAAAAATgacagggaaaggggggagagaatgAGGATCAAAGCTTTCCT
GCAAAAACCTAAAAAAAAGGAGCTTTTGAATCACACGTGACGCAAGACCA
AGAAGAGCAACGGAAACAGGACTGGCAGCTGGAATCCAGATATTGGGCCT
TGAATTTGACAGAGCGCATATCATTGTTGGTGGAAATATATATTCACACA
GATGGATTCTCTCTTTTAACATCCTGAAAGCTTATTGTACCCATTGTGCT
ATCACCTGCCCCATCCACGGAAAGGATCGATACACTTTGCAGCTTTCATT
ACACTTTCATCCCAATGATTCAAACAAAgcgacaaggaagaaaaagacac
CAAATCCTTGCCTGAAACTTATCCTCGTGAAGTTGCGGACGCTCAGAATG
CATCTCTGTCCTCTGTTGCTTGACAAACTCTAATGCCACTTCtacttctt
ttttttcaatCGTGCTCTTGCCAAGGAATACGCCTGCACTTGAAAGAGCA
AGAAATGGAAAGATAGGGCGAAAAATGACTACTTTCTACCCTGCAAATAT
ATAATGCATGGTGATTACCGTATTTTTAGGTGGAATGTCAAAAAGTCATA
TTATGACGTCACGCTTTATTCGTTTAAAGATC
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Coding sequence (CDS) from alignment at CM002457.1:95640..97421+

>rna1222 ID=rna1222|Name=rna1222|organism=Nannochloropsis gaditana|type=CDS|length=1062bp|location=Sequence derived from alignment at CM002457.1:95640..97421+ (Nannochloropsis gaditana)
ATGGCCATCAAGAAGTCCGTCCCTACCGCTGCCCGTGCCGCCCCGGCCAA
GTCTGCGGCCAAAAAAGCCAAGGTGGCTCCTAAGGCTGCGAAGCCTGCTG
GGAAACGGGGTCGCCCGGCGAGCGCTGCTAAGAAAGCTGCCAAACCCGCC
AGCAAACCTGCGTCAAAGCGTAAACCTGTGGCAAAGGCTTTGCCAGCGGT
GGCGGCGCCCAAGCCGGCCGCAAAAGCTGCCCCCAAGCCGGCGCCCAAGG
CTGTCAAGAAGAGCAAACCCGCCCCCAAGAAGACCAAGCCGGCGGTGAAG
AAGACTAAGCCCGTGGCGAAAAAAGCGACTCCTAAGGCCGCcgcgaagaa
gagcaagcccgctgcgaagaagagcaagcccgccgcgaagaagagcaagc
ccgccgcgaagaagagcaagcccGCTGCGAAGAAGGCTTTGCCCGTTATC
AAGAAGGCCGCCAAGCCCGCGGCTAAGGTGgcaaaggggaagaaagcacC
CGCTAAAAAGGCGAAGGCCACAAAGAAGTAAATGGCCATCAAGAAGTCCG
TCCCTACCGCTGCCCGTGCCGCCCCGGCCAAGTCTGCGGCCAAAAAAGCC
AAGGTGGCTCCTAAGGCTGCGAAGCCTGCTGGGAAACGGGGTCGCCCGGC
GAGCGCTGCTAAGAAAGCTGCCAAACCCGCCAGCAAACCTGCGTCAAAGC
GTAAACCTGTGGCAAAGGCTTTGCCAGCGGTGGCGGCGCCCAAGCCGGCC
GCAAAAGCTGCCCCCAAGCCGGCGCCCAAGGCTGTCAAGAAGAGCAAACC
CGCCCCCAAGAAGACCAAGCCGGCGGTGAAGAAGACTAAGCCCGTGGCGA
AAAAAGCGACTCCTAAGGCCGCcgcgaagaagagcaagcccgctgcgaag
aagagcaagcccgccgcgaagaagagcaagcccgccgcgaagaagagcaa
gcccGCTGCGAAGAAGGCTTTGCCCGTTATCAAGAAGGCCGCCAAGCCCG
CGGCTAAGGTGgcaaaggggaagaaagcacCCGCTAAAAAGGCGAAGGCC
ACAAAGAAGTAA
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Synonyms
Publications