EWM29448.1, cds1221 (CDS) Nannochloropsis gaditana

Overview
NameEWM29448.1
Unique Namecds1221
TypeCDS
OrganismNannochloropsis gaditana (N. gaditana B-31)
Alignment locationCM002457.1:95979..95990 +
Alignment locationCM002457.1:96143..96661 +

Link to JBrowse

Properties
Property NameValue
Protein idEWM29448.1
ProductHistone H5
Orig transcript idgnl|cribi|Naga_100083g15.6775.mrna
GbkeyCDS
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
CM002457.1supercontigCM002457.1:95979..95990 +
CM002457.1supercontigCM002457.1:96143..96661 +
Analyses
This CDS is derived from or has results from the following analyses
Analysis NameDate Performed
GO annotation for N. gaditana B312020-04-08
BLAST analysis for N. gaditana B-312020-04-07
InterPro analysis for N. gaditana B-312020-04-06
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
The following terms have been associated with this CDS:
Vocabulary: Biological Process
TermDefinition
GO:0006139nucleobase-containing compound metabolic process
GO:0016043cellular component organization
GO:0006334nucleosome assembly
Vocabulary: Cellular Component
TermDefinition
GO:0005634nucleus
GO:0000786nucleosome
Vocabulary: Molecular Function
TermDefinition
GO:0003677DNA binding
Vocabulary: INTERPRO
TermDefinition
IPR005819Histone_H5
Homology
[Close]
BLAST of EWM29448.1 vs. NCBI_GenBank
Match: gi|585111984|gb|EWM29448.1| (Histone H5 [Nannochloropsis gaditana])

HSP 1 Score: 251.906 bits (642), Expect = 4.450e-83
Identity = 176/176 (100.00%), Postives = 176/176 (100.00%), Query Frame = 0 
Query:    1 MAIKKSVPTAARAAPAKSAAKKAKVAPKAAKPAGKRGRPASAAKKAAKPASKPASKRKPVAKALPAVAAPKPAAKAAPKPAPKAVKKSKPAPKKTKPAVKKTKPVAKKATPKAAAKKSKPAAKKSKPAAKKSKPAAKKSKPAAKKALPVIKKAAKPAAKVAKGKKAPAKKAKATKK 176
            MAIKKSVPTAARAAPAKSAAKKAKVAPKAAKPAGKRGRPASAAKKAAKPASKPASKRKPVAKALPAVAAPKPAAKAAPKPAPKAVKKSKPAPKKTKPAVKKTKPVAKKATPKAAAKKSKPAAKKSKPAAKKSKPAAKKSKPAAKKALPVIKKAAKPAAKVAKGKKAPAKKAKATKK
Sbjct:    1 MAIKKSVPTAARAAPAKSAAKKAKVAPKAAKPAGKRGRPASAAKKAAKPASKPASKRKPVAKALPAVAAPKPAAKAAPKPAPKAVKKSKPAPKKTKPAVKKTKPVAKKATPKAAAKKSKPAAKKSKPAAKKSKPAAKKSKPAAKKALPVIKKAAKPAAKVAKGKKAPAKKAKATKK 176
[Close]
BLAST of EWM29448.1 vs. NCBI_GenBank
Match: gi|553192563|ref|XP_005855598.1| (pre-mRNA-processing factor 17 [Nannochloropsis gaditana CCMP526] >gi|422293461|gb|EKU20761.1| pre-mRNA-processing factor 17 [Nannochloropsis gaditana CCMP526])

HSP 1 Score: 265.003 bits (676), Expect = 4.106e-81
Identity = 173/176 (98.30%), Postives = 173/176 (98.30%), Query Frame = 0 
Query:    1 MAIKKSVPTAARAAPAKSAAKKAKVAPKAAKPAGKRGRPASAAKKAAKPASKPASKRKPVAKALPAVAAPKPAAKAAPKPAPKAVKKSKPAPKKTKPAVKKTKPVAKKATPKAAAKKSKPAAKKSKPAAKKSKPAAKKSKPAAKKALPVIKKAAKPAAKVAKGKKAPAKKAKATKK 176
            MAIKKSVPTAARAAPAKSAAKKAKVAPKAAKPAGKRGRPASAAKKAAKPASKPASKRKPVAKALPAVAAPKPAAKAAPKPAPKAVKKSKPAPKKTKPAVKKTKPVAKKATPK AAKKSKPAAKKSKPAAKKSKPAAKKSKPAAK ALPVIKKAAKPAAKVAK KKAPAKKAKATKK
Sbjct:  615 MAIKKSVPTAARAAPAKSAAKKAKVAPKAAKPAGKRGRPASAAKKAAKPASKPASKRKPVAKALPAVAAPKPAAKAAPKPAPKAVKKSKPAPKKTKPAVKKTKPVAKKATPKPAAKKSKPAAKKSKPAAKKSKPAAKKSKPAAKNALPVIKKAAKPAAKVAKEKKAPAKKAKATKK 790
The following BLAST results are available for this feature:
BLAST of EWM29448.1 vs. NCBI_GenBank
Analysis Date: 2020-04-07 (BLAST analysis for N. gaditana B-31)
Total hits: 2
Match NameE-valueIdentityDescription
gi|585111984|gb|EWM29448.1|4.450e-83100.00Histone H5 [Nannochloropsis gaditana][more]
gi|553192563|ref|XP_005855598.1|4.106e-8198.30pre-mRNA-processing factor 17 [Nannochloropsis gad... [more]
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Relationships

This CDS is a part of the following mRNA feature(s):

Feature NameUnique NameSpeciesType
rna1222rna1222Nannochloropsis gaditana (N. gaditana B-31)mRNA


Sequences
Synonyms
Publications