rna1211, rna1211 (mRNA) Nannochloropsis gaditana | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	rna1211
Unique Name	rna1211
Type	mRNA
Organism	Nannochloropsis gaditana (N. gaditana B-31)
Sequence length	506
Alignment location	CM002457.1:64385..66828 +

Link to JBrowse

Properties


Property Name	Value
Product	ubiquitin-conjugating enzyme domain-containing protein
Orig transcript id	gnl\|cribi\|Naga_100083g25.6789.mrna
Orig protein id	gnl\|cribi\|Naga_100083g25.6789
Gbkey	mRNA

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
CM002457.1	supercontig	CM002457.1:64385..66828 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. gaditana B-31	2014-02-18

Annotated Terms

Homology

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
Naga_100083g25	gene1167	Nannochloropsis gaditana (N. gaditana B-31)	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
rna1211	rna1211-protein	Nannochloropsis gaditana (N. gaditana B-31)	polypeptide

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
EWM29462.1	cds1210	Nannochloropsis gaditana (N. gaditana B-31)	CDS

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at CM002457.1:64385..66828+
coding sequence from alignment at CM002457.1:64385..66828+

mRNA sequence

>rna1211 ID=rna1211|Name=rna1211|organism=Nannochloropsis gaditana|type=mRNA|length=506bp
CCTCACACTTCCCAGGCTATTGGAACGGCAGGAAATTGTCCTCAGCGTTG
GATTCTTGGCCTTATCATAGTGACGACCAGGCTGGGTGATTACTTTGTGG
GAGGAGTCGCACCGACATGGCGCATCATTCCCATTCTCGAATTGCCCTCC
GGTGGGTGCACTGGATTAAGCAGCTGCGATGGGTGGTACTGGGCTTATGG
TGCGTGGTGATAGTCTTGGGGGCCACGTTCGGTCTGAAGTTCCTCGATAT
CACCGTCTCAGATTTTCCGGCGCCAGCAGGAAGTCCCTCTCACGCCTCAG
GCCAGGCTCTCTTGGAGTACTTCCCAGAGCAGGAGGGCGTGCTTCTCGAG
ACCCTGTTACTGCAGGCCTCCGCGGATGTGACCCAGCCACCCCTCTCCAC
GTCCCTGGTCGCCTTCTACCACGCCTACGCGCAGAGCCTCACGAGCCACT
ATGGGGCGTACCTGAAAGGGCCCATCCTCTCCTACTACCTGCTGAACGCC
TTCACG

protein sequence of rna1211

>rna1211-protein ID=rna1211-protein|Name=rna1211|organism=Nannochloropsis gaditana|type=polypeptide|length=233bp
MVEKASSCRHLPPPLPPPPPSSQGPPSSLRTWHGVAFIRRARYGRGIFKF
ILTLPLAYNDVDTWPRLHFLTPVYHPLVHPQTGELDLHTFYPQWDPERHF
IVTVLTLLKKIFYLKPSDYDSLIVGPGKPTPFNPEAARLYVENHAEYLRR
VESCVAASQEDVFVARDGSLFQFTEPLPLHGTLFDMLKEEHDKNSESGQA
QKVLIPEMLRKLQRSTDHGGMKAERTAVGIQLS

mRNA from alignment at CM002457.1:64385..66828+

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>rna1211 ID=rna1211|Name=rna1211|organism=Nannochloropsis gaditana|type=mRNA|length=2444bp|location=Sequence derived from alignment at CM002457.1:64385..66828+ (Nannochloropsis gaditana)
ATGGTTGAGAAGGCAAGCTCCTGCAGGTGGGTGATGTGAAAGTGAAATGT
ATTGCGAGATTGTGAGGAAGGCAGTCTGGGGGACGGGATAGAAAATGACT
ACAACGCAACGTGGGAATGACTACAGGACCGTGCCGCGCATGTCTTCTCC
ATGCCTGTCGTTTCTGTGTCCTGCGCCCAGAtccgtctccctcgtccgGT
CGCAGAGCAACCCTCATATCCTCCCAAAAGCTCCTCTTGGCTCGCAGTCC
CTTCAATCCCCCTGTCCGAATGCCCAAGATCTCTAACCCTCGTCTCCCTG
TATTCCACCCGGCAGGcatctacctcctcccctcccccccccccctccgt
cttcccaaggccccccctcctcgctccggACCTGGCACGGCGTCGCCTTC
ATCCGTCGGGCACGCTACGGGCGGGGCATCTTCAAATTTatcctcaccct
cccgcTTGCCTACAACGACGTCGACACCTGGCCGCGTCTCCATTTTCTCA
CCCCCGTCTATCACCCTCTCGTGCATCCTCAGGTACAGGATTCTCTGCGT
CCTCGGTGGCGCCCCCCagacccctccccttgccatgcctcccctctctc
tttccttctccctttgccttctctgcccgctcctccgcctgccccaCTCT
GCACTTTCTTTTCCGCCCTCgtgccctccgcccttgtGTTGCACTCGTGA
CCTATACGAGGCCTCCTACATGATGTGTATGTGGCCTCCTACATGATGTG
TATGTGTTCCTCTTCTCATCCCCTTTTacttccttgccttctcccgtcct
ccctcccttcctcgccctctctgTCTCGCTTCCCCTCAGACCGGGGAGCT
GGATCTCCATACGTTCTACCCACAGTGGGATCCAGAGCGACACTTCATCG
TCAccgtcctcaccctcctcaaaAAGATCTTCTACCTTAAGGTGCCTCGC
CTGTGTCCTTCTCACGCCTGATTGCACCTGTTCTCCCCTTCTACAACGCC
CTGGTGCCCATCCGCTTGGCTCGTGCCGAGCATACACAGGGCCATCATAC
CCTCCCTTCTATCCcacaaccctccctcccgccctccttcccttcttcca
tctcctcatcgcttcatccctttccccccctctgctTTCGCTCCCCCGAT
TTTTCCCTCAGCCCTCTGATTATGACTCGCTCATTGTCGGCCCTGGAAAA
CCTACTCCATTCAACCCGGAGGCGGCTCGCCTGTacgtggcgggggggga
ggaatggaggataAGAAAAAAGAAGTGGAATTGTGTATTGGTGCCACTTG
TAGCGGCCGCCCCAAAAGGGTAGTCATTCTGATCTTCATCCTCTCGAAAA
ACAATCATGTCCTCGTGAGCTCTCAGGGAACGACCTTTCCATTCAGTTGC
GACTCagttcttccctctctttgtgCCACCCATGATCtctgtcaccctcc
tccatctcctcttctttttgggGCAATCATCGTACCGATCATATCATTAT
TATGGCTGTGTGGTTGCCTACGAACAGGATGCAGGAAAACCATGCGGAGT
ACTTGCGGCGGGTGGAAAGCTGTGTGGCGGCATCGCAGGTGAGGTGACAG
CTGAGACGGATCCTGGATAATTGAGCGAACCATAACTATTATTATAGCTA
TTAATTATTAATGCGGTGCACGAAGGGACACTGGATAGTGATGACTGGGA
GGCGACGCACTCAATTCATCTGTTAATTATGGACAGGAAGATGTCTTCGT
GGCCAGGGACGGTTCTCTGTTTCAATTCACCGAGGTGggtcccccttttc
cccttgtcttcctcacCTCGCCATATTCTCACGCCCTTCGGTGGTCGGAC
AAGGGATGTTTAGTCGAGGAATCCTTCAGTTTGATGATCCctttcgtctt
cttccttcctctcccttgcgcCAACAGcccttgcccctccatgGCACCTT
GTTTGACATGCTGAAGGAAGAGCACGACAAGAATTCGGAAAGCGGTCAGG
CGCAGAAGGTCTTGATCCCAGAGATGTTGCGGAAACTGCAGAGGAGTACA
GACCATGGGGGCATGAAAGCCGAAAGGACGGCTGTGGGAATTCAATTGTC
ATAGGggttgaggaaagaaaggaaagatcaAGCGTCGTGACAGTGGACCG
ATAGTGAGAGACCCAACAACTGTCGGGCATGTATATGGTAATGTATGATC
GAGAGGATCAAATGAAACATGAAAAGTCGGTGTTCTTGCAAATAAGACct
gcttttttcccttcaaaACCGTGGCATGCATTTTCACATCACTCTTATCG
AATTACTATGCTTCACGTGAGAGTGATTTTTTGGTCACAACATTGTACCT
TGACTGATTACTTTGCTTACAATCCGTGATAGAAAAAGTTGCATCTCCTG
TTTACATTCAGATCCAATCTCAAGTATGACTGCGTACATTATCG

Coding sequence (CDS) from alignment at CM002457.1:64385..66828+

>rna1211 ID=rna1211|Name=rna1211|organism=Nannochloropsis gaditana|type=CDS|length=4914bp|location=Sequence derived from alignment at CM002457.1:64385..66828+ (Nannochloropsis gaditana)
ATGGTTGAGAAGGCAAGCTCCTGCAGGcatctacctcctcccctcccccc
cccccctccgtcttcccaaggccccccctcctcgctccggACCTGGCACG
GCGTCGCCTTCATCCGTCGGGCACGCTACGGGCGGGGCATCTTCAAATTT
atcctcaccctcccgcTTGCCTACAACGACGTCGACACCTGGCCGCGTCT
CCATTTTCTCACCCCCGTCTATCACCCTCTCGTGCATCCTCAGACCGGGG
AGCTGGATCTCCATACGTTCTACCCACAGTGGGATCCAGAGCGACACTTC
ATCGTCAccgtcctcaccctcctcaaaAAGATCTTCTACCTTAAGCCCTC
TGATTATGACTCGCTCATTGTCGGCCCTGGAAAACCTACTCCATTCAACC
CGGAGGCGGCTCGCCTGTacgtgGAAAACCATGCGGAGTACTTGCGGCGG
GTGGAAAGCTGTGTGGCGGCATCGCAGGAAGATGTCTTCGTGGCCAGGGA
CGGTTCTCTGTTTCAATTCACCGAGcccttgcccctccatgGCACCTTGT
TTGACATGCTGAAGGAAGAGCACGACAAGAATTCGGAAAGCGGTCAGGCG
CAGAAGGTCTTGATCCCAGAGATGTTGCGGAAACTGCAGAGGAGTACAGA
CCATGGGGGCATGAAAGCCGAAAGGACGGCTGTGGGAATTCAATTGTCAT
AGATGGTTGAGAAGGCAAGCTCCTGCAGGcatctacctcctcccctcccc
cccccccctccgtcttcccaaggccccccctcctcgctccggACCTGGCA
CGGCGTCGCCTTCATCCGTCGGGCACGCTACGGGCGGGGCATCTTCAAAT
TTatcctcaccctcccgcTTGCCTACAACGACGTCGACACCTGGCCGCGT
CTCCATTTTCTCACCCCCGTCTATCACCCTCTCGTGCATCCTCAGACCGG
GGAGCTGGATCTCCATACGTTCTACCCACAGTGGGATCCAGAGCGACACT
TCATCGTCAccgtcctcaccctcctcaaaAAGATCTTCTACCTTAAGCCC
TCTGATTATGACTCGCTCATTGTCGGCCCTGGAAAACCTACTCCATTCAA
CCCGGAGGCGGCTCGCCTGTacgtgGAAAACCATGCGGAGTACTTGCGGC
GGGTGGAAAGCTGTGTGGCGGCATCGCAGGAAGATGTCTTCGTGGCCAGG
GACGGTTCTCTGTTTCAATTCACCGAGcccttgcccctccatgGCACCTT
GTTTGACATGCTGAAGGAAGAGCACGACAAGAATTCGGAAAGCGGTCAGG
CGCAGAAGGTCTTGATCCCAGAGATGTTGCGGAAACTGCAGAGGAGTACA
GACCATGGGGGCATGAAAGCCGAAAGGACGGCTGTGGGAATTCAATTGTC
ATAGATGGTTGAGAAGGCAAGCTCCTGCAGGcatctacctcctcccctcc
cccccccccctccgtcttcccaaggccccccctcctcgctccggACCTGG
CACGGCGTCGCCTTCATCCGTCGGGCACGCTACGGGCGGGGCATCTTCAA
ATTTatcctcaccctcccgcTTGCCTACAACGACGTCGACACCTGGCCGC
GTCTCCATTTTCTCACCCCCGTCTATCACCCTCTCGTGCATCCTCAGACC
GGGGAGCTGGATCTCCATACGTTCTACCCACAGTGGGATCCAGAGCGACA
CTTCATCGTCAccgtcctcaccctcctcaaaAAGATCTTCTACCTTAAGC
CCTCTGATTATGACTCGCTCATTGTCGGCCCTGGAAAACCTACTCCATTC
AACCCGGAGGCGGCTCGCCTGTacgtgGAAAACCATGCGGAGTACTTGCG
GCGGGTGGAAAGCTGTGTGGCGGCATCGCAGGAAGATGTCTTCGTGGCCA
GGGACGGTTCTCTGTTTCAATTCACCGAGcccttgcccctccatgGCACC
TTGTTTGACATGCTGAAGGAAGAGCACGACAAGAATTCGGAAAGCGGTCA
GGCGCAGAAGGTCTTGATCCCAGAGATGTTGCGGAAACTGCAGAGGAGTA
CAGACCATGGGGGCATGAAAGCCGAAAGGACGGCTGTGGGAATTCAATTG
TCATAGATGGTTGAGAAGGCAAGCTCCTGCAGGcatctacctcctcccct
cccccccccccctccgtcttcccaaggccccccctcctcgctccggACCT
GGCACGGCGTCGCCTTCATCCGTCGGGCACGCTACGGGCGGGGCATCTTC
AAATTTatcctcaccctcccgcTTGCCTACAACGACGTCGACACCTGGCC
GCGTCTCCATTTTCTCACCCCCGTCTATCACCCTCTCGTGCATCCTCAGA
CCGGGGAGCTGGATCTCCATACGTTCTACCCACAGTGGGATCCAGAGCGA
CACTTCATCGTCAccgtcctcaccctcctcaaaAAGATCTTCTACCTTAA
GCCCTCTGATTATGACTCGCTCATTGTCGGCCCTGGAAAACCTACTCCAT
TCAACCCGGAGGCGGCTCGCCTGTacgtgGAAAACCATGCGGAGTACTTG
CGGCGGGTGGAAAGCTGTGTGGCGGCATCGCAGGAAGATGTCTTCGTGGC
CAGGGACGGTTCTCTGTTTCAATTCACCGAGcccttgcccctccatgGCA
CCTTGTTTGACATGCTGAAGGAAGAGCACGACAAGAATTCGGAAAGCGGT
CAGGCGCAGAAGGTCTTGATCCCAGAGATGTTGCGGAAACTGCAGAGGAG
TACAGACCATGGGGGCATGAAAGCCGAAAGGACGGCTGTGGGAATTCAAT
TGTCATAGATGGTTGAGAAGGCAAGCTCCTGCAGGcatctacctcctccc
ctcccccccccccctccgtcttcccaaggccccccctcctcgctccggAC
CTGGCACGGCGTCGCCTTCATCCGTCGGGCACGCTACGGGCGGGGCATCT
TCAAATTTatcctcaccctcccgcTTGCCTACAACGACGTCGACACCTGG
CCGCGTCTCCATTTTCTCACCCCCGTCTATCACCCTCTCGTGCATCCTCA
GACCGGGGAGCTGGATCTCCATACGTTCTACCCACAGTGGGATCCAGAGC
GACACTTCATCGTCAccgtcctcaccctcctcaaaAAGATCTTCTACCTT
AAGCCCTCTGATTATGACTCGCTCATTGTCGGCCCTGGAAAACCTACTCC
ATTCAACCCGGAGGCGGCTCGCCTGTacgtgGAAAACCATGCGGAGTACT
TGCGGCGGGTGGAAAGCTGTGTGGCGGCATCGCAGGAAGATGTCTTCGTG
GCCAGGGACGGTTCTCTGTTTCAATTCACCGAGcccttgcccctccatgG
CACCTTGTTTGACATGCTGAAGGAAGAGCACGACAAGAATTCGGAAAGCG
GTCAGGCGCAGAAGGTCTTGATCCCAGAGATGTTGCGGAAACTGCAGAGG
AGTACAGACCATGGGGGCATGAAAGCCGAAAGGACGGCTGTGGGAATTCA
ATTGTCATAGATGGTTGAGAAGGCAAGCTCCTGCAGGcatctacctcctc
ccctcccccccccccctccgtcttcccaaggccccccctcctcgctccgg
ACCTGGCACGGCGTCGCCTTCATCCGTCGGGCACGCTACGGGCGGGGCAT
CTTCAAATTTatcctcaccctcccgcTTGCCTACAACGACGTCGACACCT
GGCCGCGTCTCCATTTTCTCACCCCCGTCTATCACCCTCTCGTGCATCCT
CAGACCGGGGAGCTGGATCTCCATACGTTCTACCCACAGTGGGATCCAGA
GCGACACTTCATCGTCAccgtcctcaccctcctcaaaAAGATCTTCTACC
TTAAGCCCTCTGATTATGACTCGCTCATTGTCGGCCCTGGAAAACCTACT
CCATTCAACCCGGAGGCGGCTCGCCTGTacgtgGAAAACCATGCGGAGTA
CTTGCGGCGGGTGGAAAGCTGTGTGGCGGCATCGCAGGAAGATGTCTTCG
TGGCCAGGGACGGTTCTCTGTTTCAATTCACCGAGcccttgcccctccat
gGCACCTTGTTTGACATGCTGAAGGAAGAGCACGACAAGAATTCGGAAAG
CGGTCAGGCGCAGAAGGTCTTGATCCCAGAGATGTTGCGGAAACTGCAGA
GGAGTACAGACCATGGGGGCATGAAAGCCGAAAGGACGGCTGTGGGAATT
CAATTGTCATAGATGGTTGAGAAGGCAAGCTCCTGCAGGcatctacctcc
tcccctcccccccccccctccgtcttcccaaggccccccctcctcgctcc
ggACCTGGCACGGCGTCGCCTTCATCCGTCGGGCACGCTACGGGCGGGGC
ATCTTCAAATTTatcctcaccctcccgcTTGCCTACAACGACGTCGACAC
CTGGCCGCGTCTCCATTTTCTCACCCCCGTCTATCACCCTCTCGTGCATC
CTCAGACCGGGGAGCTGGATCTCCATACGTTCTACCCACAGTGGGATCCA
GAGCGACACTTCATCGTCAccgtcctcaccctcctcaaaAAGATCTTCTA
CCTTAAGCCCTCTGATTATGACTCGCTCATTGTCGGCCCTGGAAAACCTA
CTCCATTCAACCCGGAGGCGGCTCGCCTGTacgtgGAAAACCATGCGGAG
TACTTGCGGCGGGTGGAAAGCTGTGTGGCGGCATCGCAGGAAGATGTCTT
CGTGGCCAGGGACGGTTCTCTGTTTCAATTCACCGAGcccttgcccctcc
atgGCACCTTGTTTGACATGCTGAAGGAAGAGCACGACAAGAATTCGGAA
AGCGGTCAGGCGCAGAAGGTCTTGATCCCAGAGATGTTGCGGAAACTGCA
GAGGAGTACAGACCATGGGGGCATGAAAGCCGAAAGGACGGCTGTGGGAA
TTCAATTGTCATAG

Synonyms

Publications