EWM29462.1, cds1210 (CDS) Nannochloropsis gaditana

Overview
NameEWM29462.1
Unique Namecds1210
TypeCDS
OrganismNannochloropsis gaditana (N. gaditana B-31)
Alignment locationCM002457.1:64385..64410 +
Alignment locationCM002457.1:64700..64916 +
Alignment locationCM002457.1:65224..65325 +
Alignment locationCM002457.1:65546..65623 +
Alignment locationCM002457.1:65919..65972 +
Alignment locationCM002457.1:66121..66168 +
Alignment locationCM002457.1:66312..66488 +

Link to JBrowse

Properties
Property NameValue
Protein idEWM29462.1
Productubiquitin-conjugating enzyme domain-containing protein
Orig transcript idgnl|cribi|Naga_100083g25.6789.mrna
GbkeyCDS
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
CM002457.1supercontigCM002457.1:64385..64410 +
CM002457.1supercontigCM002457.1:64700..64916 +
CM002457.1supercontigCM002457.1:65224..65325 +
CM002457.1supercontigCM002457.1:65546..65623 +
CM002457.1supercontigCM002457.1:65919..65972 +
CM002457.1supercontigCM002457.1:66121..66168 +
CM002457.1supercontigCM002457.1:66312..66488 +
Analyses
This CDS is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST analysis for N. gaditana B-312020-04-07
InterPro analysis for N. gaditana B-312020-04-06
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
The following terms have been associated with this CDS:
Vocabulary: INTERPRO
TermDefinition
IPR016135UBQ-conjugating_enzyme/RWD
IPR000608UBQ-conjugat_E2
Homology
BLAST of EWM29462.1 vs. NCBI_GenBank
Match: gi|585111998|gb|EWM29462.1| (ubiquitin-conjugating enzyme domain-containing protein [Nannochloropsis gaditana])

HSP 1 Score: 480.33 bits (1235), Expect = 1.204e-171
Identity = 233/233 (100.00%), Postives = 233/233 (100.00%), Query Frame = 0
Query:    1 MVEKASSCRHLPPPLPPPPPSSQGPPSSLRTWHGVAFIRRARYGRGIFKFILTLPLAYNDVDTWPRLHFLTPVYHPLVHPQTGELDLHTFYPQWDPERHFIVTVLTLLKKIFYLKPSDYDSLIVGPGKPTPFNPEAARLYVENHAEYLRRVESCVAASQEDVFVARDGSLFQFTEPLPLHGTLFDMLKEEHDKNSESGQAQKVLIPEMLRKLQRSTDHGGMKAERTAVGIQLS 233
            MVEKASSCRHLPPPLPPPPPSSQGPPSSLRTWHGVAFIRRARYGRGIFKFILTLPLAYNDVDTWPRLHFLTPVYHPLVHPQTGELDLHTFYPQWDPERHFIVTVLTLLKKIFYLKPSDYDSLIVGPGKPTPFNPEAARLYVENHAEYLRRVESCVAASQEDVFVARDGSLFQFTEPLPLHGTLFDMLKEEHDKNSESGQAQKVLIPEMLRKLQRSTDHGGMKAERTAVGIQLS
Sbjct:    1 MVEKASSCRHLPPPLPPPPPSSQGPPSSLRTWHGVAFIRRARYGRGIFKFILTLPLAYNDVDTWPRLHFLTPVYHPLVHPQTGELDLHTFYPQWDPERHFIVTVLTLLKKIFYLKPSDYDSLIVGPGKPTPFNPEAARLYVENHAEYLRRVESCVAASQEDVFVARDGSLFQFTEPLPLHGTLFDMLKEEHDKNSESGQAQKVLIPEMLRKLQRSTDHGGMKAERTAVGIQLS 233          
BLAST of EWM29462.1 vs. NCBI_GenBank
Match: gi|299116104|emb|CBN74520.1| (conserved unknown protein [Ectocarpus siliculosus])

HSP 1 Score: 157.532 bits (397), Expect = 3.094e-44
Identity = 85/204 (41.67%), Postives = 120/204 (58.82%), Query Frame = 0
Query:   29 LRTWHGVAFIRRARYGRGIFKFILTLPLAYNDVDTWPRLHFLTPVYHPLVHPQTGELDLHTFYPQWDPERHFIVTVLTLLKKIFYLKPSDYDSLIVGPGKPTPFNPEAARLYVENHAEYLRRVESCVAASQEDVFVARDGSLFQFTEPLPLHGTLFDMLKEEHDKNSESGQAQKVLIPEMLRKLQRST------DHGGMKAERT 226
            LR W+GV F+RR  Y  G+FKF + LP  YND  TWP + F + V++P+V P TGELDL + +P+W P +H++VT LT LKK+FY+K   +         P P NPEA  L+ ++   +L RVE+CV  SQE V+   +GS  +FTEP P H    D L+E+     ++  A+  L P   R+L+ ST        G  +A+RT
Sbjct:   41 LRIWYGVIFVRRGHYANGVFKFRVELPPDYNDAGTWPIIRFTSSVFNPMVSPITGELDLRSVFPEWLPGKHYMVTALTYLKKVFYMKDFSF---------PRPANPEAQALFQDDKRGFLERVEACVRESQETVYENEEGSSLRFTEPKPAH----DKLREKILGTDQA--AKSSLPPTGTRELKVSTAATTGAGEGSTEADRT 229          
BLAST of EWM29462.1 vs. NCBI_GenBank
Match: gi|223993477|ref|XP_002286422.1| (predicted protein [Thalassiosira pseudonana CCMP1335] >gi|220977737|gb|EED96063.1| predicted protein [Thalassiosira pseudonana CCMP1335])

HSP 1 Score: 157.147 bits (396), Expect = 9.878e-44
Identity = 79/177 (44.63%), Postives = 109/177 (61.58%), Query Frame = 0
Query:   27 SSLRTWHGVAFIRRARYGRGIFKFILTLPLAYNDVDTWPRLHFLTPVYHPLVHPQTGELDLHTFYPQWDPERHFIVTVLTLLKKIFYLKPSDYDSLIVGPGKPTPFNPEAARLYVENHAEYLRRVESCVAASQEDVFVARDGSLFQFTEPLPLHGTLFDMLKEEHDKNSESGQAQKV 203
            +SLR +HGV F+RR R+  GIFKF L  P  YNDVD  P++ F + VY+P VHP+TGELDL + YPQWDP +HF+VTVLT +K+IFY+K    + +  G  +    N EA RL+  +   Y RRV+ CV  SQ  VF+   G   +F+E   +H    D++K+    N ++  A  V
Sbjct:   62 TSLRLFHGVIFVRRGRFTNGIFKFTLECPPRYNDVDCHPKVVFSSYVYNPHVHPETGELDLKSAYPQWDPAKHFLVTVLTYVKRIFYIK----EYVEEGEAEKKYPNQEALRLFKGDGEGYRRRVQECVRESQRSVFLNDPGCTVRFSEEEKVHVIFRDLMKQRFGGNDDNASADDV 234          
BLAST of EWM29462.1 vs. NCBI_GenBank
Match: gi|1210528144|dbj|GAX13259.1| (hypothetical protein FisN_17Hh196 [Fistulifera solaris])

HSP 1 Score: 149.058 bits (375), Expect = 6.508e-41
Identity = 81/183 (44.26%), Postives = 108/183 (59.02%), Query Frame = 0
Query:   29 LRTWHGVAFIRRARYGRGIFKFILTLPLAYNDVDTWPRLHFLTPVYHPLVHPQTGELDLHTFYPQWDPERHFIVTVLTLLKKIFYLKPSDYDSLIVGPGKPTPFNPEAARLYVENHAEYLRRVESCVAASQEDVFVARDGSLFQFTEPLPLHGTLFDMLKEEHDKNSESGQAQKVLIPEMLRK 211
            LRT++G+ F+RR  +  GIFKF+L LPL YNDVD  PR+ F + VY+P V   TGELD+ T YP WDP +H++VTVLT LKKIFY K         G  +    N EA +L  EN A Y  +V++CV+ SQ+DV+     S+ +FTE    H  L D+LK       +  Q  K  +  M+ K
Sbjct:   69 LRTFYGIIFVRRGVFANGIFKFVLRLPLLYNDVDQHPRITFQSEVYNPYVDEATGELDIKTAYPNWDPSKHYLVTVLTFLKKIFYAKS-------FGDAQA---NMEARQLAEENTAVYRAKVDACVSKSQKDVYDNDPESVAKFTEEQLSHRVLRDLLKANV---KDPAQVSKTALLSMISK 238          
BLAST of EWM29462.1 vs. NCBI_GenBank
Match: gi|1210529459|dbj|GAX11895.1| (hypothetical protein FisN_17Lh196 [Fistulifera solaris])

HSP 1 Score: 149.058 bits (375), Expect = 6.943e-41
Identity = 80/183 (43.72%), Postives = 108/183 (59.02%), Query Frame = 0
Query:   29 LRTWHGVAFIRRARYGRGIFKFILTLPLAYNDVDTWPRLHFLTPVYHPLVHPQTGELDLHTFYPQWDPERHFIVTVLTLLKKIFYLKPSDYDSLIVGPGKPTPFNPEAARLYVENHAEYLRRVESCVAASQEDVFVARDGSLFQFTEPLPLHGTLFDMLKEEHDKNSESGQAQKVLIPEMLRK 211
            LRT++G+ F+RR  +  GIFKF+L LPL YNDVD  PR+ F + VY+P +   TGELD+ T YP WDP +H++VTVLT LKKIFY K         G  +    N EA +L  EN A Y  +V++CV+ SQ+DV+     S+ +FTE    H  L D+LK       +  Q  K  +  M+ K
Sbjct:   69 LRTFYGIIFVRRGVFANGIFKFVLRLPLLYNDVDQHPRITFQSEVYNPYIDETTGELDIKTAYPNWDPSKHYLVTVLTFLKKIFYAKS-------FGDAQA---NMEARQLAEENMAVYRAKVDACVSKSQKDVYDNDPESVAKFTEEQLSHRVLRDLLKA---NVKDPAQVSKTALLSMISK 238          
BLAST of EWM29462.1 vs. NCBI_GenBank
Match: gi|1072237019|gb|OEU21746.1| (UBC-like protein [Fragilariopsis cylindrus CCMP1102])

HSP 1 Score: 143.665 bits (361), Expect = 6.155e-39
Identity = 80/178 (44.94%), Postives = 105/178 (58.99%), Query Frame = 0
Query:   28 SLRTWHGVAFIRRARYGRGIFKFILTLPLAYNDVDTWPRLHFLTPVYHPLVHPQTGELDLHTFYPQWDPERHFIVTVLTLLKKIFYLKP-SDYDSLIVGPGKPTPFNPEAARLYVENHAEYLRRVESCVAASQEDVFVARDGSLFQFTEPLPLHGTLFDMLKEEHDKNSESGQAQKVL 204
            SLR ++G+ F+RR  +  GIFKF LTLP  YNDV+ WP + F + VY+P VH +TGELD+   YP WDP RH++VTVLT LKKIFY K  +D  +           N +A +L   +   Y ++VE CV  SQ++V+V  + S   FTE    H  L D+LK  H KN      Q VL
Sbjct:   54 SLREFYGIIFVRRGPFTNGIFKFKLTLPPKYNDVNMWPYIVFASHVYNPYVHEETGELDVQGAYPTWDPSRHYLVTVLTYLKKIFYSKNFTDAKA-----------NLDAKQLAENDLQSYKQKVEECVHESQKNVYVNDENSTAIFTEEEVAHRVLRDLLK-HHIKNENQVTKQAVL 219          
BLAST of EWM29462.1 vs. NCBI_GenBank
Match: gi|219113597|ref|XP_002186382.1| (predicted protein [Phaeodactylum tricornutum CCAP 1055/1] >gi|209583232|gb|ACI65852.1| predicted protein [Phaeodactylum tricornutum CCAP 1055/1])

HSP 1 Score: 136.346 bits (342), Expect = 7.347e-36
Identity = 76/183 (41.53%), Postives = 107/183 (58.47%), Query Frame = 0
Query:   29 LRTWHGVAFIRRARYGRGIFKFILTLPLAYNDVDTWPRLHFLTPVYHPLVHPQTGELDLHTFYPQWDPERHFIVTVLTLLKKIFYLKPSDYDSLIVGPGKPTPFNPEAARLYVENHAEYLRRVESCVAASQEDVFVARDGSLFQFTEPLPLHGTLFDMLKEEHDKNSESGQAQKVLIPEMLRK 211
            LR ++G+ F+RR  +  GIFKF LTL   YND +  PR+ F + VY+P VH ++GELD+ + YP+WDP RH++VTVLT LKKIFY K  +              N EA  L  +  AE+ ++V++CV ASQ+ VF   + S  QF+E    H  L D+LK+      +   A K +I  M+ K
Sbjct:   76 LRHFYGIIFVRRGPFTNGIFKFELTLSPEYNDNNQHPRIAFSSSVYNPHVHYESGELDIKSAYPRWDPSRHYLVTVLTFLKKIFYAKSFE----------DAKANAEARELATKYPAEFRQKVDACVLASQKQVFQNDETSTAQFSEEELSHRVLLDLLKQ---NIKDPTAASKQVILSMIEK 245          
BLAST of EWM29462.1 vs. NCBI_GenBank
Match: gi|676389943|ref|XP_009038250.1| (hypothetical protein AURANDRAFT_28446 [Aureococcus anophagefferens] >gi|323451134|gb|EGB07012.1| hypothetical protein AURANDRAFT_28446 [Aureococcus anophagefferens])

HSP 1 Score: 131.339 bits (329), Expect = 1.160e-34
Identity = 68/134 (50.75%), Postives = 88/134 (65.67%), Query Frame = 0
Query:   27 SSLRTWHGVAFIRRARYGRGIFKFILTLPLAYNDVDTWPRLHFLTPVYHPLVHPQTGELDLHTFYPQWDPERHFIVTVLTLLKKIFYLKPSDYDSLIVGPGKPTPFNPEAARLYVENHAEYLRRVESCVAASQE 160
            + LRTWHGV F+RR  Y  G+FKF + LP  YNDV  WPR+ F + +Y PLV  ++GELD+   YP+WDP +H++VTVLT LKKIFY+K    D      G   P N  AAR Y ++  E+LR VE+CV AS +
Sbjct:   39 ADLRTWHGVIFVRRGMYASGVFKFRVELPPEYNDVGAWPRVFFTSRIYSPLVDAESGELDVKFAYPEWDPAKHYVVTVLTFLKKIFYIK----DGF---EGYEAPKNAAAARAYADDAPEFLREVEACVRASGD 165          
BLAST of EWM29462.1 vs. NCBI_GenBank
Match: gi|813208987|ref|XP_012210292.1| (hypothetical protein SPRG_15754 [Saprolegnia parasitica CBS 223.65] >gi|641524405|gb|KDO19005.1| hypothetical protein SPRG_15754 [Saprolegnia parasitica CBS 223.65])

HSP 1 Score: 129.028 bits (323), Expect = 8.310e-33
Identity = 64/154 (41.56%), Postives = 89/154 (57.79%), Query Frame = 0
Query:   30 RTWHGVAFIRRARYGRGIFKFILTLPLAYNDVDTWPRLHFLTPVYHPLVHPQTGELDLHTFYPQWDPERHFIVTVLTLLKKIFYLKPSDYDSLIVGPGKPTPFNPEAARLYVENHAEYLRRVESCVAASQEDVFVARDGSLFQFTEPLPLHGTL 183
            R WHGV FI +  Y  GIFKF + LP  YN + T+PR+ F T V+HP V+P T ELDL   +P WDP+ H+IV+VL  +K IFY K    D   V        NP A  ++  +   Y+ ++++CV  S E ++    GS  +FT+P+P H  L
Sbjct:   74 RLWHGVIFIHQGLYRNGIFKFSIHLPDDYNGIGTYPRVEFYTKVFHPFVNPDTNELDLLPKFPTWDPDLHYIVSVLVYMKSIFYTKEFASDLRNVA-------NPRALEMFRRHPESYVEQIDACVEKSLETMYQNEPGSSLRFTKPIPAHEKL 220          
BLAST of EWM29462.1 vs. NCBI_GenBank
Match: gi|669157358|ref|XP_008614241.1| (hypothetical protein SDRG_10047 [Saprolegnia diclina VS20] >gi|530734058|gb|EQC32300.1| hypothetical protein SDRG_10047 [Saprolegnia diclina VS20])

HSP 1 Score: 128.642 bits (322), Expect = 1.174e-32
Identity = 64/154 (41.56%), Postives = 89/154 (57.79%), Query Frame = 0
Query:   30 RTWHGVAFIRRARYGRGIFKFILTLPLAYNDVDTWPRLHFLTPVYHPLVHPQTGELDLHTFYPQWDPERHFIVTVLTLLKKIFYLKPSDYDSLIVGPGKPTPFNPEAARLYVENHAEYLRRVESCVAASQEDVFVARDGSLFQFTEPLPLHGTL 183
            R WHGV FI +  Y  GIFKF + LP  YN + T+PR+ F T V+HP V+P T ELDL   +P WDP+ H+IV+VL  +K IFY K    D   V        NP A  ++  +   Y+ ++++CV  S E ++    GS  +FT+P+P H  L
Sbjct:   74 RLWHGVIFIHQGLYRNGIFKFSIHLPDDYNGIGTYPRVEFYTKVFHPFVNPDTNELDLLPKFPTWDPDLHYIVSVLVYMKSIFYTKEFASDLRNVA-------NPRALEMFRRHPESYVEQIDACVEKSLETMYQNEPGSSLRFTKPIPAHEKL 220          
The following BLAST results are available for this feature:
BLAST of EWM29462.1 vs. NCBI_GenBank
Analysis Date: 2020-04-07 (BLAST analysis for N. gaditana B-31)
Total hits: 10
Match NameE-valueIdentityDescription
gi|585111998|gb|EWM29462.1|1.204e-171100.00ubiquitin-conjugating enzyme domain-containing pro... [more]
gi|299116104|emb|CBN74520.1|3.094e-4441.67conserved unknown protein [Ectocarpus siliculosus][more]
gi|223993477|ref|XP_002286422.1|9.878e-4444.63predicted protein [Thalassiosira pseudonana CCMP13... [more]
gi|1210528144|dbj|GAX13259.1|6.508e-4144.26hypothetical protein FisN_17Hh196 [Fistulifera sol... [more]
gi|1210529459|dbj|GAX11895.1|6.943e-4143.72hypothetical protein FisN_17Lh196 [Fistulifera sol... [more]
gi|1072237019|gb|OEU21746.1|6.155e-3944.94UBC-like protein [Fragilariopsis cylindrus CCMP110... [more]
gi|219113597|ref|XP_002186382.1|7.347e-3641.53predicted protein [Phaeodactylum tricornutum CCAP ... [more]
gi|676389943|ref|XP_009038250.1|1.160e-3450.75hypothetical protein AURANDRAFT_28446 [Aureococcus... [more]
gi|813208987|ref|XP_012210292.1|8.310e-3341.56hypothetical protein SPRG_15754 [Saprolegnia paras... [more]
gi|669157358|ref|XP_008614241.1|1.174e-3241.56hypothetical protein SDRG_10047 [Saprolegnia dicli... [more]
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Relationships

This CDS is a part of the following mRNA feature(s):

Feature NameUnique NameSpeciesType
rna1211rna1211Nannochloropsis gaditana (N. gaditana B-31)mRNA


Sequences
Synonyms
Publications