EWM29462.1, cds1210 (CDS) Nannochloropsis gaditana
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Overview
Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Analyses
This CDS is derived from or has results from the following analyses
Annotated Terms
The following terms have been associated with this CDS:
Homology
BLAST of EWM29462.1 vs. NCBI_GenBank
Match: gi|585111998|gb|EWM29462.1| (ubiquitin-conjugating enzyme domain-containing protein [Nannochloropsis gaditana]) HSP 1 Score: 480.33 bits (1235), Expect = 1.204e-171 Identity = 233/233 (100.00%), Postives = 233/233 (100.00%), Query Frame = 0
Query: 1 MVEKASSCRHLPPPLPPPPPSSQGPPSSLRTWHGVAFIRRARYGRGIFKFILTLPLAYNDVDTWPRLHFLTPVYHPLVHPQTGELDLHTFYPQWDPERHFIVTVLTLLKKIFYLKPSDYDSLIVGPGKPTPFNPEAARLYVENHAEYLRRVESCVAASQEDVFVARDGSLFQFTEPLPLHGTLFDMLKEEHDKNSESGQAQKVLIPEMLRKLQRSTDHGGMKAERTAVGIQLS 233
MVEKASSCRHLPPPLPPPPPSSQGPPSSLRTWHGVAFIRRARYGRGIFKFILTLPLAYNDVDTWPRLHFLTPVYHPLVHPQTGELDLHTFYPQWDPERHFIVTVLTLLKKIFYLKPSDYDSLIVGPGKPTPFNPEAARLYVENHAEYLRRVESCVAASQEDVFVARDGSLFQFTEPLPLHGTLFDMLKEEHDKNSESGQAQKVLIPEMLRKLQRSTDHGGMKAERTAVGIQLS
Sbjct: 1 MVEKASSCRHLPPPLPPPPPSSQGPPSSLRTWHGVAFIRRARYGRGIFKFILTLPLAYNDVDTWPRLHFLTPVYHPLVHPQTGELDLHTFYPQWDPERHFIVTVLTLLKKIFYLKPSDYDSLIVGPGKPTPFNPEAARLYVENHAEYLRRVESCVAASQEDVFVARDGSLFQFTEPLPLHGTLFDMLKEEHDKNSESGQAQKVLIPEMLRKLQRSTDHGGMKAERTAVGIQLS 233
BLAST of EWM29462.1 vs. NCBI_GenBank
Match: gi|299116104|emb|CBN74520.1| (conserved unknown protein [Ectocarpus siliculosus]) HSP 1 Score: 157.532 bits (397), Expect = 3.094e-44 Identity = 85/204 (41.67%), Postives = 120/204 (58.82%), Query Frame = 0
Query: 29 LRTWHGVAFIRRARYGRGIFKFILTLPLAYNDVDTWPRLHFLTPVYHPLVHPQTGELDLHTFYPQWDPERHFIVTVLTLLKKIFYLKPSDYDSLIVGPGKPTPFNPEAARLYVENHAEYLRRVESCVAASQEDVFVARDGSLFQFTEPLPLHGTLFDMLKEEHDKNSESGQAQKVLIPEMLRKLQRST------DHGGMKAERT 226
LR W+GV F+RR Y G+FKF + LP YND TWP + F + V++P+V P TGELDL + +P+W P +H++VT LT LKK+FY+K + P P NPEA L+ ++ +L RVE+CV SQE V+ +GS +FTEP P H D L+E+ ++ A+ L P R+L+ ST G +A+RT
Sbjct: 41 LRIWYGVIFVRRGHYANGVFKFRVELPPDYNDAGTWPIIRFTSSVFNPMVSPITGELDLRSVFPEWLPGKHYMVTALTYLKKVFYMKDFSF---------PRPANPEAQALFQDDKRGFLERVEACVRESQETVYENEEGSSLRFTEPKPAH----DKLREKILGTDQA--AKSSLPPTGTRELKVSTAATTGAGEGSTEADRT 229
BLAST of EWM29462.1 vs. NCBI_GenBank
Match: gi|223993477|ref|XP_002286422.1| (predicted protein [Thalassiosira pseudonana CCMP1335] >gi|220977737|gb|EED96063.1| predicted protein [Thalassiosira pseudonana CCMP1335]) HSP 1 Score: 157.147 bits (396), Expect = 9.878e-44 Identity = 79/177 (44.63%), Postives = 109/177 (61.58%), Query Frame = 0
Query: 27 SSLRTWHGVAFIRRARYGRGIFKFILTLPLAYNDVDTWPRLHFLTPVYHPLVHPQTGELDLHTFYPQWDPERHFIVTVLTLLKKIFYLKPSDYDSLIVGPGKPTPFNPEAARLYVENHAEYLRRVESCVAASQEDVFVARDGSLFQFTEPLPLHGTLFDMLKEEHDKNSESGQAQKV 203
+SLR +HGV F+RR R+ GIFKF L P YNDVD P++ F + VY+P VHP+TGELDL + YPQWDP +HF+VTVLT +K+IFY+K + + G + N EA RL+ + Y RRV+ CV SQ VF+ G +F+E +H D++K+ N ++ A V
Sbjct: 62 TSLRLFHGVIFVRRGRFTNGIFKFTLECPPRYNDVDCHPKVVFSSYVYNPHVHPETGELDLKSAYPQWDPAKHFLVTVLTYVKRIFYIK----EYVEEGEAEKKYPNQEALRLFKGDGEGYRRRVQECVRESQRSVFLNDPGCTVRFSEEEKVHVIFRDLMKQRFGGNDDNASADDV 234
BLAST of EWM29462.1 vs. NCBI_GenBank
Match: gi|1210528144|dbj|GAX13259.1| (hypothetical protein FisN_17Hh196 [Fistulifera solaris]) HSP 1 Score: 149.058 bits (375), Expect = 6.508e-41 Identity = 81/183 (44.26%), Postives = 108/183 (59.02%), Query Frame = 0
Query: 29 LRTWHGVAFIRRARYGRGIFKFILTLPLAYNDVDTWPRLHFLTPVYHPLVHPQTGELDLHTFYPQWDPERHFIVTVLTLLKKIFYLKPSDYDSLIVGPGKPTPFNPEAARLYVENHAEYLRRVESCVAASQEDVFVARDGSLFQFTEPLPLHGTLFDMLKEEHDKNSESGQAQKVLIPEMLRK 211
LRT++G+ F+RR + GIFKF+L LPL YNDVD PR+ F + VY+P V TGELD+ T YP WDP +H++VTVLT LKKIFY K G + N EA +L EN A Y +V++CV+ SQ+DV+ S+ +FTE H L D+LK + Q K + M+ K
Sbjct: 69 LRTFYGIIFVRRGVFANGIFKFVLRLPLLYNDVDQHPRITFQSEVYNPYVDEATGELDIKTAYPNWDPSKHYLVTVLTFLKKIFYAKS-------FGDAQA---NMEARQLAEENTAVYRAKVDACVSKSQKDVYDNDPESVAKFTEEQLSHRVLRDLLKANV---KDPAQVSKTALLSMISK 238
BLAST of EWM29462.1 vs. NCBI_GenBank
Match: gi|1210529459|dbj|GAX11895.1| (hypothetical protein FisN_17Lh196 [Fistulifera solaris]) HSP 1 Score: 149.058 bits (375), Expect = 6.943e-41 Identity = 80/183 (43.72%), Postives = 108/183 (59.02%), Query Frame = 0
Query: 29 LRTWHGVAFIRRARYGRGIFKFILTLPLAYNDVDTWPRLHFLTPVYHPLVHPQTGELDLHTFYPQWDPERHFIVTVLTLLKKIFYLKPSDYDSLIVGPGKPTPFNPEAARLYVENHAEYLRRVESCVAASQEDVFVARDGSLFQFTEPLPLHGTLFDMLKEEHDKNSESGQAQKVLIPEMLRK 211
LRT++G+ F+RR + GIFKF+L LPL YNDVD PR+ F + VY+P + TGELD+ T YP WDP +H++VTVLT LKKIFY K G + N EA +L EN A Y +V++CV+ SQ+DV+ S+ +FTE H L D+LK + Q K + M+ K
Sbjct: 69 LRTFYGIIFVRRGVFANGIFKFVLRLPLLYNDVDQHPRITFQSEVYNPYIDETTGELDIKTAYPNWDPSKHYLVTVLTFLKKIFYAKS-------FGDAQA---NMEARQLAEENMAVYRAKVDACVSKSQKDVYDNDPESVAKFTEEQLSHRVLRDLLKA---NVKDPAQVSKTALLSMISK 238
BLAST of EWM29462.1 vs. NCBI_GenBank
Match: gi|1072237019|gb|OEU21746.1| (UBC-like protein [Fragilariopsis cylindrus CCMP1102]) HSP 1 Score: 143.665 bits (361), Expect = 6.155e-39 Identity = 80/178 (44.94%), Postives = 105/178 (58.99%), Query Frame = 0
Query: 28 SLRTWHGVAFIRRARYGRGIFKFILTLPLAYNDVDTWPRLHFLTPVYHPLVHPQTGELDLHTFYPQWDPERHFIVTVLTLLKKIFYLKP-SDYDSLIVGPGKPTPFNPEAARLYVENHAEYLRRVESCVAASQEDVFVARDGSLFQFTEPLPLHGTLFDMLKEEHDKNSESGQAQKVL 204
SLR ++G+ F+RR + GIFKF LTLP YNDV+ WP + F + VY+P VH +TGELD+ YP WDP RH++VTVLT LKKIFY K +D + N +A +L + Y ++VE CV SQ++V+V + S FTE H L D+LK H KN Q VL
Sbjct: 54 SLREFYGIIFVRRGPFTNGIFKFKLTLPPKYNDVNMWPYIVFASHVYNPYVHEETGELDVQGAYPTWDPSRHYLVTVLTYLKKIFYSKNFTDAKA-----------NLDAKQLAENDLQSYKQKVEECVHESQKNVYVNDENSTAIFTEEEVAHRVLRDLLK-HHIKNENQVTKQAVL 219
BLAST of EWM29462.1 vs. NCBI_GenBank
Match: gi|219113597|ref|XP_002186382.1| (predicted protein [Phaeodactylum tricornutum CCAP 1055/1] >gi|209583232|gb|ACI65852.1| predicted protein [Phaeodactylum tricornutum CCAP 1055/1]) HSP 1 Score: 136.346 bits (342), Expect = 7.347e-36 Identity = 76/183 (41.53%), Postives = 107/183 (58.47%), Query Frame = 0
Query: 29 LRTWHGVAFIRRARYGRGIFKFILTLPLAYNDVDTWPRLHFLTPVYHPLVHPQTGELDLHTFYPQWDPERHFIVTVLTLLKKIFYLKPSDYDSLIVGPGKPTPFNPEAARLYVENHAEYLRRVESCVAASQEDVFVARDGSLFQFTEPLPLHGTLFDMLKEEHDKNSESGQAQKVLIPEMLRK 211
LR ++G+ F+RR + GIFKF LTL YND + PR+ F + VY+P VH ++GELD+ + YP+WDP RH++VTVLT LKKIFY K + N EA L + AE+ ++V++CV ASQ+ VF + S QF+E H L D+LK+ + A K +I M+ K
Sbjct: 76 LRHFYGIIFVRRGPFTNGIFKFELTLSPEYNDNNQHPRIAFSSSVYNPHVHYESGELDIKSAYPRWDPSRHYLVTVLTFLKKIFYAKSFE----------DAKANAEARELATKYPAEFRQKVDACVLASQKQVFQNDETSTAQFSEEELSHRVLLDLLKQ---NIKDPTAASKQVILSMIEK 245
BLAST of EWM29462.1 vs. NCBI_GenBank
Match: gi|676389943|ref|XP_009038250.1| (hypothetical protein AURANDRAFT_28446 [Aureococcus anophagefferens] >gi|323451134|gb|EGB07012.1| hypothetical protein AURANDRAFT_28446 [Aureococcus anophagefferens]) HSP 1 Score: 131.339 bits (329), Expect = 1.160e-34 Identity = 68/134 (50.75%), Postives = 88/134 (65.67%), Query Frame = 0
Query: 27 SSLRTWHGVAFIRRARYGRGIFKFILTLPLAYNDVDTWPRLHFLTPVYHPLVHPQTGELDLHTFYPQWDPERHFIVTVLTLLKKIFYLKPSDYDSLIVGPGKPTPFNPEAARLYVENHAEYLRRVESCVAASQE 160
+ LRTWHGV F+RR Y G+FKF + LP YNDV WPR+ F + +Y PLV ++GELD+ YP+WDP +H++VTVLT LKKIFY+K D G P N AAR Y ++ E+LR VE+CV AS +
Sbjct: 39 ADLRTWHGVIFVRRGMYASGVFKFRVELPPEYNDVGAWPRVFFTSRIYSPLVDAESGELDVKFAYPEWDPAKHYVVTVLTFLKKIFYIK----DGF---EGYEAPKNAAAARAYADDAPEFLREVEACVRASGD 165
BLAST of EWM29462.1 vs. NCBI_GenBank
Match: gi|813208987|ref|XP_012210292.1| (hypothetical protein SPRG_15754 [Saprolegnia parasitica CBS 223.65] >gi|641524405|gb|KDO19005.1| hypothetical protein SPRG_15754 [Saprolegnia parasitica CBS 223.65]) HSP 1 Score: 129.028 bits (323), Expect = 8.310e-33 Identity = 64/154 (41.56%), Postives = 89/154 (57.79%), Query Frame = 0
Query: 30 RTWHGVAFIRRARYGRGIFKFILTLPLAYNDVDTWPRLHFLTPVYHPLVHPQTGELDLHTFYPQWDPERHFIVTVLTLLKKIFYLKPSDYDSLIVGPGKPTPFNPEAARLYVENHAEYLRRVESCVAASQEDVFVARDGSLFQFTEPLPLHGTL 183
R WHGV FI + Y GIFKF + LP YN + T+PR+ F T V+HP V+P T ELDL +P WDP+ H+IV+VL +K IFY K D V NP A ++ + Y+ ++++CV S E ++ GS +FT+P+P H L
Sbjct: 74 RLWHGVIFIHQGLYRNGIFKFSIHLPDDYNGIGTYPRVEFYTKVFHPFVNPDTNELDLLPKFPTWDPDLHYIVSVLVYMKSIFYTKEFASDLRNVA-------NPRALEMFRRHPESYVEQIDACVEKSLETMYQNEPGSSLRFTKPIPAHEKL 220
BLAST of EWM29462.1 vs. NCBI_GenBank
Match: gi|669157358|ref|XP_008614241.1| (hypothetical protein SDRG_10047 [Saprolegnia diclina VS20] >gi|530734058|gb|EQC32300.1| hypothetical protein SDRG_10047 [Saprolegnia diclina VS20]) HSP 1 Score: 128.642 bits (322), Expect = 1.174e-32 Identity = 64/154 (41.56%), Postives = 89/154 (57.79%), Query Frame = 0
Query: 30 RTWHGVAFIRRARYGRGIFKFILTLPLAYNDVDTWPRLHFLTPVYHPLVHPQTGELDLHTFYPQWDPERHFIVTVLTLLKKIFYLKPSDYDSLIVGPGKPTPFNPEAARLYVENHAEYLRRVESCVAASQEDVFVARDGSLFQFTEPLPLHGTL 183
R WHGV FI + Y GIFKF + LP YN + T+PR+ F T V+HP V+P T ELDL +P WDP+ H+IV+VL +K IFY K D V NP A ++ + Y+ ++++CV S E ++ GS +FT+P+P H L
Sbjct: 74 RLWHGVIFIHQGLYRNGIFKFSIHLPDDYNGIGTYPRVEFYTKVFHPFVNPDTNELDLLPKFPTWDPDLHYIVSVLVYMKSIFYTKEFASDLRNVA-------NPRALEMFRRHPESYVEQIDACVEKSLETMYQNEPGSSLRFTKPIPAHEKL 220 The following BLAST results are available for this feature:
BLAST of EWM29462.1 vs. NCBI_GenBank
Analysis Date: 2020-04-07 (BLAST analysis for N. gaditana B-31) Total hits: 10
Relationships
This CDS is a part of the following mRNA feature(s):
Sequences
Synonyms
Publications
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