rna1210, rna1210 (mRNA) Nannochloropsis gaditana

Overview
Namerna1210
Unique Namerna1210
TypemRNA
OrganismNannochloropsis gaditana (N. gaditana B-31)
Sequence length2048
Alignment locationCM002457.1:62482..63574 -

Link to JBrowse

Properties
Property NameValue
Producthypothetical protein
Orig transcript idgnl|cribi|Naga_100083g26.6772.mrna
Orig protein idgnl|cribi|Naga_100083g26.6772
GbkeymRNA
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
CM002457.1supercontigCM002457.1:62482..63574 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
Naga_100083g26gene1166Nannochloropsis gaditana (N. gaditana B-31)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
rna1210rna1210-proteinNannochloropsis gaditana (N. gaditana B-31)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
EWM29445.1cds1209Nannochloropsis gaditana (N. gaditana B-31)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>rna1210 ID=rna1210|Name=rna1210|organism=Nannochloropsis gaditana|type=mRNA|length=2048bp
GAAGACCTGTTCAACGCCGTCTGCCTCATGACCGAGAGCGCCGGCTACAT
CATCCTCGTCAGCGGCTCCACCCTCTGCGTCTCATTCCTGGGCCTCGTCT
TCCTCCCCATGGAGATCCTTCGGTCCTTGGGCCTCGCCGCCTCCATCACC
ATCCTGACGGCCCTCTCCGTCAATCTCACCCTCCTCCCTGCCCTCCTCCT
CGTCCTAGGGCCCGCCCTCCTTGCGGCAGATGCCTGGATGAAACGGGGAT
GGGCGAGGGGGAAAGCGGCCCTGTGGGGAAGGAGGGGGAGGAGGAAGGGG
AGGAGGAAGGGGGCGGGTAAAGGAGGTTGGGAAGCACCGCTCCTGGAAGG
CGCGACGGACAAGGAAGAGAAGGAGCAACGCGTGTGGAAGAAGGAGGAGG
CGATGGAGGAGAACAGCGAGGAGATGGACGATGGTGGCTACGACTGTGAC
GAGTCGGCGCCCCTGAAGAAAGGCTGTTGGCTCGGATTGGCCAGGTTAGG
GGAAGGGAGGGAGGGGACGGAGAGGGAAGTCGATGGAAGCATCGCGTGCT
CGCAGTGTGTCCGTGTACGTAGCCCCAGTGCCGGTCAATGCCGCTCTTAC
TCTTTCCTTTCCCCTCCTACCAAAGGTTCATCTCCCACAAACCCTACGGC
CTTGGTGCCCTCCTCCTCCTTCTCGCCCTGGCTCTTCCCGTTGCGGTGCA
ACTTAAGGACATGGAAACAAGCGTTGAATTCGACCTCATGCTCCCCTTTG
GCTCGGGCTCCTGCAACACGCTCGAAACGATTTCCTCCAACTACGGAGGG
GCGGGCGTCGTCTTCCCCTACAAAGTCATTTTTATTGACAGTGAGGATAT
CTTCACTCCTCAAAGCTACGCCGCCATGAGCCATGTCCTCGCATCCCTGG
TAGAAAGTGCGCCGCCGCTTGAGCTAATGGACGTGACTGGGATCATGGTC
TTGGGGGGGCAGGAAGTATCTTACGCGGAGATGACTGCGGCCTTGAACGC
CACCGTGCCCACAACCAGGCAGTTCACGCTGCAGACACTACGTGACACCC
TGGTATCGTCCAATGGCAAGGCCACCTACGCCACACTGACCCTGACCATC
GACCCTTACTCGTCCGAGGGGCAGGCCTGGATCGACACGGTTCGCGACAT
ATTGAAGGGATCTGAGTCCTCCTCAGGCCTCACACTCCATCTGGACGGTC
CTGCCGCCGTGATCCACGACGCGGTGGGCTCCGTCCTCTCCGCCTTCCCT
ACCATGATTAGTATCACCCTCGCCGTCGTCTTCTTCCTCATTGGGGTGGC
CTACCGGTCCATCGTCGCCCCGCTTCGCTCCGTCCTCACCATCGCGCTCA
CCCTCACCTTTGTCTACGGCCTGGCCGTTTGCGTCTATCAATGGGGGGCG
TTTGATGGGCTCGGTCTCCGGGCTCTGGGACAGTCGGGCTCCCTGGCCTG
GCTTCCCCTCGTTATGTGTTTCTCCATCATCGTCGGCCTCGGGCTGGACT
ATGACGTCTTCCTCGTCACCCGCATCTTGGAGTACAGGATGGAGGCGCAC
ACGGACCAAGGTGCCCTGGTGCGGGGCATGGTCAACACGGGACACATCAT
CACGGCGGCAGGTATCATTATGGCTGTAGCTTTCTCAGGCCTCCTCTTCT
CCTCCGAGCTTATCCTCAATCAGACCGCGTTCCTCCTCGTCGTCTCTGTC
CTCCTTGATACTTTCATCGTGCGGACGTTCCTGGTCCCGATCCTGATGAC
ATGGTCTGGAGCTTACACATGGTGGCCTAGGCAGCGATTACCGACACCAA
CAAAAGATCTGTGTCCGGAAGAGTACATAGTGTGTGTGAGGCCTGCTTCT
TTTGAAGGCAAAGTCATCCCAGCCTCGGAGAAGGAACAAAAAACGGGACA
GCATGTCAGGTGGCATTGCAGCCATTGTTTCTCTTCTGGTGCCCGGCCCC
CGCCGAGGTTTGAGCTGACTAATATTCAGACGACTGCGGCCATTAACGGA
TCCATGAAAAGTCGACAGTTCCAAGCCCATGCAGCAAGCTTTTCGTAA
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protein sequence of rna1210

>rna1210-protein ID=rna1210-protein|Name=rna1210|organism=Nannochloropsis gaditana|type=polypeptide|length=130bp
MAHHSHSRIALRWVHWIKQLRWVVLGLWCVVIVLGATFGLKFLDITVSDF
PAPAGSPSHASGQALLEYFPEQEGVLLETLLLQASADVTQPPLSTSLVAF
YHAYAQSLTSHYGAYLKGPILSYYLLNAFT
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mRNA from alignment at CM002457.1:62482..63574-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>rna1210 ID=rna1210|Name=rna1210|organism=Nannochloropsis gaditana|type=mRNA|length=1093bp|location=Sequence derived from alignment at CM002457.1:62482..63574- (Nannochloropsis gaditana)
CCTCACACTTCCCAGGCTATTGGAACGGCAGGAAATTGTCCTCAGCGTTG
GATTCTTGGCCTTATCATAGTGACGACCAGGCTGGGTGATTACTTTGTGG
GAGGAGTCGCACCGACATGGCGCATCATTCCCATTCTCGAATTGCCCTCC
GGTGGGTGCACTGGATTAAGCAGCTGCGATGGGTGGTACTGGGCTTATGG
TACGTCGAGGAGTTGCATGAGAGGAGCATAATCGCATGAATTGAGAAGAA
GAGGATGCGAGTGAGCAAGGCCAACCACGATGGAAGGAAGACAGGAAGGG
GGGGAACGAGATTATATCGGAGCATCTTGGGATGTTAACAACTCAAAATG
ACGGTGAACAGTTTTCTTTTTTTCAAGGCTGCGATTCATGTGTGAGGCAC
GATTGTGTGAAACCTAGAAACGTCAAATCCTTGTGGACATTGGAACATTT
TTTTACCCTCCTTTCCCTCACTCATCCATTTCAGGTGCGTGGTGATAGTC
TTGGGGGCCACGTTCGGTCTGAAGTTCCTCGATATCACCGTCTCAGATTT
TCCGGCGCCAGCAGGAAGGTAAAGACTGCTGTGCGAGGACGATGAGGGAG
AAGAGGGGAGGCTCGGGGAGGGAAAGGCCAGGGAGAGGGTAGGAAGTGAG
ACAATAGGGGGGCAGAAAGTGGCGTAACCCCCGAGAGGGACGATGAAAAC
GAAGCATCACTGAGCAAGAGGTGGTTTCCGACGGTACTTATCCCTTTCTA
TCCTCCTCTGCCCCTCCTATTTTCAGTCCCTCTCACGCCTCAGGCCAGGC
TCTCTTGGAGTACTTCCCAGAGCAGGAGGGCGTGCTTCTCGAGACCCTGT
TACTGCAGGTCAGGTGGCAGGGAGGCTCACACAGAGAGGGAAAAGCACGG
AGGCCTCATACAATGCCCCTCCCTCCCTCTCTCTCTCCCTCCCTCCCTCC
AGGCCTCCGCGGATGTGACCCAGCCACCCCTCTCCACGTCCCTGGTCGCC
TTCTACCACGCCTACGCGCAGAGCCTCACGAGCCACTATGGGGCGTACCT
GAAAGGGCCCATCCTCTCCTACTACCTGCTGAACGCCTTCACG
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Coding sequence (CDS) from alignment at CM002457.1:62482..63574-

>rna1210 ID=rna1210|Name=rna1210|organism=Nannochloropsis gaditana|type=CDS|length=1560bp|location=Sequence derived from alignment at CM002457.1:62482..63574- (Nannochloropsis gaditana)
GCCTCCGCGGATGTGACCCAGCCACCCCTCTCCACGTCCCTGGTCGCCTT
CTACCACGCCTACGCGCAGAGCCTCACGAGCCACTATGGGGCGTACCTGA
AAGGGCCCATCCTCTCCTACTACCTGCTGAACGCCTTCACGTCCCTCTCA
CGCCTCAGGCCAGGCTCTCTTGGAGTACTTCCCAGAGCAGGAGGGCGTGC
TTCTCGAGACCCTGTTACTGCAGGTGCGTGGTGATAGTCTTGGGGGCCAC
GTTCGGTCTGAAGTTCCTCGATATCACCGTCTCAGATTTTCCGGCGCCAG
CAGGAAGATGGCGCATCATTCCCATTCTCGAATTGCCCTCCGGTGGGTGC
ACTGGATTAAGCAGCTGCGATGGGTGGTACTGGGCTTATGGCCTCCGCGG
ATGTGACCCAGCCACCCCTCTCCACGTCCCTGGTCGCCTTCTACCACGCC
TACGCGCAGAGCCTCACGAGCCACTATGGGGCGTACCTGAAAGGGCCCAT
CCTCTCCTACTACCTGCTGAACGCCTTCACGTCCCTCTCACGCCTCAGGC
CAGGCTCTCTTGGAGTACTTCCCAGAGCAGGAGGGCGTGCTTCTCGAGAC
CCTGTTACTGCAGGTGCGTGGTGATAGTCTTGGGGGCCACGTTCGGTCTG
AAGTTCCTCGATATCACCGTCTCAGATTTTCCGGCGCCAGCAGGAAGATG
GCGCATCATTCCCATTCTCGAATTGCCCTCCGGTGGGTGCACTGGATTAA
GCAGCTGCGATGGGTGGTACTGGGCTTATGGCCTCCGCGGATGTGACCCA
GCCACCCCTCTCCACGTCCCTGGTCGCCTTCTACCACGCCTACGCGCAGA
GCCTCACGAGCCACTATGGGGCGTACCTGAAAGGGCCCATCCTCTCCTAC
TACCTGCTGAACGCCTTCACGTCCCTCTCACGCCTCAGGCCAGGCTCTCT
TGGAGTACTTCCCAGAGCAGGAGGGCGTGCTTCTCGAGACCCTGTTACTG
CAGGTGCGTGGTGATAGTCTTGGGGGCCACGTTCGGTCTGAAGTTCCTCG
ATATCACCGTCTCAGATTTTCCGGCGCCAGCAGGAAGATGGCGCATCATT
CCCATTCTCGAATTGCCCTCCGGTGGGTGCACTGGATTAAGCAGCTGCGA
TGGGTGGTACTGGGCTTATGGCCTCCGCGGATGTGACCCAGCCACCCCTC
TCCACGTCCCTGGTCGCCTTCTACCACGCCTACGCGCAGAGCCTCACGAG
CCACTATGGGGCGTACCTGAAAGGGCCCATCCTCTCCTACTACCTGCTGA
ACGCCTTCACGTCCCTCTCACGCCTCAGGCCAGGCTCTCTTGGAGTACTT
CCCAGAGCAGGAGGGCGTGCTTCTCGAGACCCTGTTACTGCAGGTGCGTG
GTGATAGTCTTGGGGGCCACGTTCGGTCTGAAGTTCCTCGATATCACCGT
CTCAGATTTTCCGGCGCCAGCAGGAAGATGGCGCATCATTCCCATTCTCG
AATTGCCCTCCGGTGGGTGCACTGGATTAAGCAGCTGCGATGGGTGGTAC
TGGGCTTATG
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Synonyms
Publications