EWM29445.1, cds1209 (CDS) Nannochloropsis gaditana

Overview
NameEWM29445.1
Unique Namecds1209
TypeCDS
OrganismNannochloropsis gaditana (N. gaditana B-31)
Alignment locationCM002457.1:63376..63458 -
Alignment locationCM002457.1:63007..63090 -
Alignment locationCM002457.1:62717..62798 -
Alignment locationCM002457.1:62482..62622 -

Link to JBrowse

Properties
Property NameValue
Start range62482
Start range.
Protein idEWM29445.1
Producthypothetical protein
Partialtrue
Orig transcript idgnl|cribi|Naga_100083g26.6772.mrna
GbkeyCDS
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
CM002457.1supercontigCM002457.1:63376..63458 -
CM002457.1supercontigCM002457.1:63007..63090 -
CM002457.1supercontigCM002457.1:62717..62798 -
CM002457.1supercontigCM002457.1:62482..62622 -
Analyses
This CDS is derived from or has results from the following analyses
Analysis NameDate Performed
GO annotation for N. gaditana B312020-04-08
BLAST analysis for N. gaditana B-312020-04-07
InterPro analysis for N. gaditana B-312020-04-06
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
The following terms have been associated with this CDS:
Vocabulary: Cellular Component
TermDefinition
GO:0016020membrane
Homology
[Close]
BLAST of EWM29445.1 vs. NCBI_GenBank
Match: gi|585111981|gb|EWM29445.1| (hypothetical protein Naga_100083g26, partial [Nannochloropsis gaditana])

HSP 1 Score: 263.462 bits (672), Expect = 3.410e-89
Identity = 130/130 (100.00%), Postives = 130/130 (100.00%), Query Frame = 0 
Query:    1 MAHHSHSRIALRWVHWIKQLRWVVLGLWCVVIVLGATFGLKFLDITVSDFPAPAGSPSHASGQALLEYFPEQEGVLLETLLLQASADVTQPPLSTSLVAFYHAYAQSLTSHYGAYLKGPILSYYLLNAFT 130
            MAHHSHSRIALRWVHWIKQLRWVVLGLWCVVIVLGATFGLKFLDITVSDFPAPAGSPSHASGQALLEYFPEQEGVLLETLLLQASADVTQPPLSTSLVAFYHAYAQSLTSHYGAYLKGPILSYYLLNAFT
Sbjct:    1 MAHHSHSRIALRWVHWIKQLRWVVLGLWCVVIVLGATFGLKFLDITVSDFPAPAGSPSHASGQALLEYFPEQEGVLLETLLLQASADVTQPPLSTSLVAFYHAYAQSLTSHYGAYLKGPILSYYLLNAFT 130
[Close]
BLAST of EWM29445.1 vs. NCBI_GenBank
Match: gi|553179407|ref|XP_005852697.1| (hypothetical protein NGA_0724400, partial [Nannochloropsis gaditana CCMP526] >gi|422295835|gb|EKU23134.1| hypothetical protein NGA_0724400, partial [Nannochloropsis gaditana CCMP526])

HSP 1 Score: 263.848 bits (673), Expect = 4.194e-89
Identity = 130/130 (100.00%), Postives = 130/130 (100.00%), Query Frame = 0 
Query:    1 MAHHSHSRIALRWVHWIKQLRWVVLGLWCVVIVLGATFGLKFLDITVSDFPAPAGSPSHASGQALLEYFPEQEGVLLETLLLQASADVTQPPLSTSLVAFYHAYAQSLTSHYGAYLKGPILSYYLLNAFT 130
            MAHHSHSRIALRWVHWIKQLRWVVLGLWCVVIVLGATFGLKFLDITVSDFPAPAGSPSHASGQALLEYFPEQEGVLLETLLLQASADVTQPPLSTSLVAFYHAYAQSLTSHYGAYLKGPILSYYLLNAFT
Sbjct:    1 MAHHSHSRIALRWVHWIKQLRWVVLGLWCVVIVLGATFGLKFLDITVSDFPAPAGSPSHASGQALLEYFPEQEGVLLETLLLQASADVTQPPLSTSLVAFYHAYAQSLTSHYGAYLKGPILSYYLLNAFT 130
The following BLAST results are available for this feature:
BLAST of EWM29445.1 vs. NCBI_GenBank
Analysis Date: 2020-04-07 (BLAST analysis for N. gaditana B-31)
Total hits: 2
Match NameE-valueIdentityDescription
gi|585111981|gb|EWM29445.1|3.410e-89100.00hypothetical protein Naga_100083g26, partial [Nann... [more]
gi|553179407|ref|XP_005852697.1|4.194e-89100.00hypothetical protein NGA_0724400, partial [Nannoch... [more]
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Relationships

This CDS is a part of the following mRNA feature(s):

Feature NameUnique NameSpeciesType
rna1210rna1210Nannochloropsis gaditana (N. gaditana B-31)mRNA


Sequences
Synonyms
Publications