rna1205, rna1205 (mRNA) Nannochloropsis gaditana

Overview
Namerna1205
Unique Namerna1205
TypemRNA
OrganismNannochloropsis gaditana (N. gaditana B-31)
Sequence length366
Alignment locationCM002457.1:50832..51050 +

Link to JBrowse

Properties
Property NameValue
Producthypothetical protein
Orig transcript idgnl|cribi|Naga_100449g5.9456.mrna
Orig protein idgnl|cribi|Naga_100449g5.9456
GbkeymRNA
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
CM002457.1supercontigCM002457.1:50832..51050 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
Naga_100449g5gene1160Nannochloropsis gaditana (N. gaditana B-31)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
rna1205rna1205-proteinNannochloropsis gaditana (N. gaditana B-31)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
EWM29468.1cds1204Nannochloropsis gaditana (N. gaditana B-31)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>rna1205 ID=rna1205|Name=rna1205|organism=Nannochloropsis gaditana|type=mRNA|length=366bp
ATGCCACGTCATGACCCTCTCTTTTTCCAACCCTTCTTACAGCATGGATC
CTTACATCATGAACCGCGTCTGGACATCACCGTTCCCGAGGGTGCCCATT
GCCATCACACCCTCCTTGTCCGAGCTCTCTTCCGCGCCTCTCTCTTCGAC
GCCTTCTTCCGCTTCCTCTTCGACTTATCCTGTGACACCTTCAGCAGCAC
TTCGACCCTTTGGGGTGGAATACGAAGCCTACATGACTTTGCTGACGTGC
GCCCTCATACTGATCGTCTGGGTAGGAGGTGTCATCCTGTGGTATTTGTA
CTGTATACGCCGCCCGCCGCGCCTCTTTCGGGGACGTGGTCATTTGATCA
GGGCCGTCACGGATGA
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protein sequence of rna1205

>rna1205-protein ID=rna1205-protein|Name=rna1205|organism=Nannochloropsis gaditana|type=polypeptide|length=72bp
MLKWVYTACFYLDAGVVRLCEIMAGMILEKDHARIASLRGPTPSLARKRL
RVYVVSPPCRCMTCAMFFFNVR
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mRNA from alignment at CM002457.1:50832..51050+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>rna1205 ID=rna1205|Name=rna1205|organism=Nannochloropsis gaditana|type=mRNA|length=219bp|location=Sequence derived from alignment at CM002457.1:50832..51050+ (Nannochloropsis gaditana)
ATGTTAAAGTGGGTATACACAGCATGCTTTTATCTGGATGCAGGTGTTGT
CCGTCTCTGTGAGATTATGGCGGGTATGATCCTTGAAAAAGACCACGCAC
GCATTGCCTCGCTCAGGGGCCCAACGCCATCCTTAGCTAGAAAAAGGTTG
CGAGTTTATGTGGTCTCACCCCCTTGCAGATGTATGACATGCGCCATGTT
TTTTTTCAACGTGAGATAA
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Coding sequence (CDS) from alignment at CM002457.1:50832..51050+

>rna1205 ID=rna1205|Name=rna1205|organism=Nannochloropsis gaditana|type=CDS|length=219bp|location=Sequence derived from alignment at CM002457.1:50832..51050+ (Nannochloropsis gaditana)
ATGTTAAAGTGGGTATACACAGCATGCTTTTATCTGGATGCAGGTGTTGT
CCGTCTCTGTGAGATTATGGCGGGTATGATCCTTGAAAAAGACCACGCAC
GCATTGCCTCGCTCAGGGGCCCAACGCCATCCTTAGCTAGAAAAAGGTTG
CGAGTTTATGTGGTCTCACCCCCTTGCAGATGTATGACATGCGCCATGTT
TTTTTTCAACGTGAGATAA
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Synonyms
Publications