rna1191, rna1191 (mRNA) Nannochloropsis gaditana

Overview
Namerna1191
Unique Namerna1191
TypemRNA
OrganismNannochloropsis gaditana (N. gaditana B-31)
Sequence length566
Alignment locationCM002456.1:1439925..1440418 -

Link to JBrowse

Properties
Property NameValue
Producthypothetical protein
Orig transcript idgnl|cribi|Naga_101611g2.5763.mrna
Orig protein idgnl|cribi|Naga_101611g2.5763
GbkeymRNA
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
CM002456.1supercontigCM002456.1:1439925..1440418 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
Naga_101611g2gene1146Nannochloropsis gaditana (N. gaditana B-31)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
rna1191rna1191-proteinNannochloropsis gaditana (N. gaditana B-31)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
EWM29483.1cds1190Nannochloropsis gaditana (N. gaditana B-31)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>rna1191 ID=rna1191|Name=rna1191|organism=Nannochloropsis gaditana|type=mRNA|length=566bp
TTTTGTGAAGTCGACAGGGCACTTCCTGTAATACGCAAGGCGCCATGCAG
CAAGCCTGGTTGTTTCTCCTAGACACAAGCACCAGCATGGGTGACCCGTA
CGCCCATCCAGCCCTCCTTGATGACCTTCCTTCAAGTATACAAGTCCCTC
CACCCTCCAAACTCCAAGTTGCACAAGAAATAGTAACCTTGCTGGTGGCA
GCGCAGGCAGTGGCGGAGTCAGGGAGGGCCACTCGAAAGTGCCAAATCGG
GGCCTGTGCCTTTGGAACCGACGAGACATCTCACCCGCTCGAAGCGCTGG
GGGCAGGGTATGAGAATTTGCTCGAGGTCTCCCCCCTCCACCCCCTGGAT
TTTGGGCGTTTGCTGGACGTGCTCCACCTCCCTCCCTCTCGTACTGGCGT
CAAAGGCGACATACTGGCCGGTCTGATCCTGGCAGTGGACCGGCTGAAAG
CCCGGACGGAGGTGTTGGGCAAACGCTGCCACCGGCATTTGGTGGTTGTG
ACTGACGCGTGCTCGGCTCTGCGGGAGGTGGAGGGCCTAGAGGTGGTGGT
GGAACAGGTTGGAGGG
back to top

protein sequence of rna1191

>rna1191-protein ID=rna1191-protein|Name=rna1191|organism=Nannochloropsis gaditana|type=polypeptide|length=74bp
MMLHALALTLPFPPKKGPGKTLSLRTDDPFDGKYYAPEEDEEARGKERER
EGRREGGEDCGCDVDGNDLAYPPG
back to top

mRNA from alignment at CM002456.1:1439925..1440418-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>rna1191 ID=rna1191|Name=rna1191|organism=Nannochloropsis gaditana|type=mRNA|length=494bp|location=Sequence derived from alignment at CM002456.1:1439925..1440418- (Nannochloropsis gaditana)
CAGTGGGAGACTGCACCTACGGGGGAGACAAGACTTCTTCCCGTATGATG
CTTCACGCCCTCGCGCTCACCCTCCCCTTTCCCCCCAAGAAGGTCCGTCA
ACCTCGTTCCCTCCCTACCACCCTCCCTACCACCCTCCCTACCACCCTCC
CTACCACCCTCCCTACCACCCTCCCTCCCTCCCCCTCTCCCACCTTCCCC
CTCCTTTCAGTCCTCAACGTCTACCTTGTAGTCAGCCTGCCCCTCCCTCC
CTCCCTCCCTCCCTCCCTCCCTCCCTCCCTTCCAGGGCCCGGGGAAGACG
CTGAGCCTCCGCACTGACGATCCCTTCGATGGGAAGTACTATGCGCCCGA
GGAGGACGAGGAAGCGCGGGGCAAGGAACGAGAGAGGGAGGGGAGGAGGG
AGGGAGGGGAGGACTGTGGTTGCGATGTTGACGGTAATGACCTCGCATAT
CCTCCAGGGTGAGAAAAAGAAACCAAGAAATGTTTATTAAAGGG
back to top

Coding sequence (CDS) from alignment at CM002456.1:1439925..1440418-

>rna1191 ID=rna1191|Name=rna1191|organism=Nannochloropsis gaditana|type=CDS|length=450bp|location=Sequence derived from alignment at CM002456.1:1439925..1440418- (Nannochloropsis gaditana)
GGCCCGGGGAAGACGCTGAGCCTCCGCACTGACGATCCCTTCGATGGGAA
GTACTATGCGCCCGAGGAGGACGAGGAAGCGCGGGGCAAGGAACGAGAGA
GGGAGGGGAGGAGGGAGGGAGGGGAGGACTGTGGTTGCGATGTTGACGGT
AATGACCTCGCATATCCTCCAGGGTGAATGATGCTTCACGCCCTCGCGCT
CACCCTCCCCTTTCCCCCCAAGAAGGGCCCGGGGAAGACGCTGAGCCTCC
GCACTGACGATCCCTTCGATGGGAAGTACTATGCGCCCGAGGAGGACGAG
GAAGCGCGGGGCAAGGAACGAGAGAGGGAGGGGAGGAGGGAGGGAGGGGA
GGACTGTGGTTGCGATGTTGACGGTAATGACCTCGCATATCCTCCAGGGT
GAATGATGCTTCACGCCCTCGCGCTCACCCTCCCCTTTCCCCCCAAGAAG
back to top
Synonyms
Publications