rna1190, rna1190 (mRNA) Nannochloropsis gaditana

Overview
Namerna1190
Unique Namerna1190
TypemRNA
OrganismNannochloropsis gaditana (N. gaditana B-31)
Sequence length1387
Alignment locationCM002456.1:1437516..1438239 +

Link to JBrowse

Properties
Property NameValue
Producthypothetical protein
Orig transcript idgnl|cribi|Naga_100928g4.10504.mrna
Orig protein idgnl|cribi|Naga_100928g4.10504
GbkeymRNA
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
CM002456.1supercontigCM002456.1:1437516..1438239 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
Naga_100928g4gene1145Nannochloropsis gaditana (N. gaditana B-31)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
rna1190rna1190-proteinNannochloropsis gaditana (N. gaditana B-31)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
EWM29484.1cds1189Nannochloropsis gaditana (N. gaditana B-31)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>rna1190 ID=rna1190|Name=rna1190|organism=Nannochloropsis gaditana|type=mRNA|length=1387bp
GTACACAGTGATAGCGGACGGCAGGAAAGCTGGCATGTGGAGACCTGTGC
CTGTCTTCATCCTCCTCCTTGTTCTCCCTGTGGTCGTTTATGCCTTCGTC
TCTCCTGCTCGAGTACCCTCATCGTGCACCCTGCCATCCTCCTCTATCAT
CACGGCCACGTGTCTTGCACCCTCCCTCATCCACCGTCTTGCCACATCCG
AGGACGATCCTCCTCCACCACCCACAACGCTGGTCGACAAGCTGTTTTCC
CTTTTTTTTGGGGCCAAGGAGGCGAAACCTTTAGGATTTGCCCGCATTTC
CGTCGAGTCGTCTCCCGAGGTCTACCCTGCGACGACCAGCATCTTCGCGG
ACCCCCTACCAGGAGACAGTCGCGACGTGGCTGCATTGCGCCCGTTGCTC
GCCCAGACCCGCTTGGAAAAAGCGCCGCTGAACCTGATCTACGACGCGGT
CCGGGACGGATGGAAAAAAGGGGATTTTCACCGAAAAGTGGACAACCGAG
GAGCCACCCTGGTCGTAGCCCGGACTCGGGGAGGCGCCGTGTGCGGGGGG
TACAACCCGGAGGTAGGAAGGGAGGGGGAGGGCGGAGAATGGGCGGGGGG
GGTGGACGGAGGGCATGATGCTGCAGAGAAGGACGCAGGAGGAAGAGGAG
GAGTACACCTATACACACACACAAGGAGACAGCGAAAGGAAAACGGCTTT
CATCGCACCCCTTCCTCTCCCGGCATCAGAATGCTGAGTTTTCTCCCTCC
CTTCCTTCCTCTCTCCCTCCCTCCTTCCTTCCCTCCTCAGGGCTGGGAAG
GCGTCGGGGACGAGCGCCAGTGCATTTCTGCATTTCTTTTCACTTGGCCT
CAGGGCAAGATGCGGGCGTCTCGGCCCATAAAGTGCCCGAAAGTGGGGGG
AGCCTCGTACGCCGTCGACGACAATCCGGCGCTGGCCATCAAGTTTGGGT
ATGAAGATTTTTCCCTCAAACTCACCACGGACCGAAAAGCCATCAGCAAG
CTAGGTTTGGCCTACGCCAAGCTACCCGGAGGAGCGACCTCTCTTTTCGC
GCCCTCGGAGGGAAAAATGGCGGAAATTGTGGACCTGAAAGTCTACGCGC
GCAAGGGTAGATGAAGAGGGCAGGAAGGAGAGCGGGCGGGAAGGAGGGAG
GGAGGGAAGTGTGGAGAGAAAGGAGATGAAACTGCAGGTAAACTGGAAAG
CACGACGCATGAGAGTGGTTCGTCCATAGGAACAAAGGGACAGCAACTGC
CACTTGTTTTGGCCGCCGTGGGGCAGAGTTTTCTTTGACGTGTTCCGTGC
GTTTACTCTTCGAACGGAACGTTTAAATGAACGTTTCGGGCCATTCCGGA
CGCGTGATCCTCCGAGGGACGTACTCGCTCCTTGTAT
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protein sequence of rna1190

>rna1190-protein ID=rna1190-protein|Name=rna1190|organism=Nannochloropsis gaditana|type=polypeptide|length=174bp
MQQAWLFLLDTSTSMGDPYAHPALLDDLPSSIQVPPPSKLQVAQEIVTLL
VAAQAVAESGRATRKCQIGACAFGTDETSHPLEALGAGYENLLEVSPLHP
LDFGRLLDVLHLPPSRTGVKGDILAGLILAVDRLKARTEVLGKRCHRHLV
VVTDACSALREVEGLEVVVEQVGG
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mRNA from alignment at CM002456.1:1437516..1438239+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>rna1190 ID=rna1190|Name=rna1190|organism=Nannochloropsis gaditana|type=mRNA|length=724bp|location=Sequence derived from alignment at CM002456.1:1437516..1438239+ (Nannochloropsis gaditana)
TTTTGTGAAGTCGACAGGGCACTTCCTGTAATACGCAAGGCGCCATGCAG
CAAGCCTGGTTGTTTCTCCTAGACACAAGCACCAGCATGGGTGACCCGTA
CGCCCATCCAGCCCTCCTTGATGACCTTCCTTCAAGTATACAagtccctc
caccctccaaACTCCAAGTTGCACAAGAAATAGTAACCTTGCTGGTGGCA
GCGCAGGCAGTGGCGGAGTCAGGCAAGTTTTTTCCTGGGTACAACAAAGC
CATGCGTGTGTTGAGAGAAAAGAAATCTGACAAGAAAGCCGGTCTCATCG
AAGCattggacgagggaggatggcaagTCCTTTTCGTGTCGTGCTTCGTG
CTGACTTCCTTTGTATGCCTCGTTTCCCAGGGAGGGCCACTCGAAAGTGC
CAAATCGGGGCCTGTGCCTTTGGAACCGACGAGACATCTCACCCGCTCGA
AGCGCTGGGGGCAGGGTATGAGAATTTGCTCGaggtctcccccctccacc
ccctggATTTTGGGCGTTTGCTGGACgtgctccacctccctccctctcgt
acTGGCGTCAAAGGCGACATACTGGCCGGTCTGATCCTGGCAGTGGACCG
GCTGAAAGCCCGGACGGAGGTGTTGGGCAAACGCTGCCACCGGCATTTGG
TGGTTGTGACTGACGCGTGCTCGGCTctgcgggaggtggagggcctagag
gtggtggtggaacaGGTTGGAGGG
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Coding sequence (CDS) from alignment at CM002456.1:1437516..1438239+

>rna1190 ID=rna1190|Name=rna1190|organism=Nannochloropsis gaditana|type=CDS|length=1044bp|location=Sequence derived from alignment at CM002456.1:1437516..1438239+ (Nannochloropsis gaditana)
ATGCAGCAAGCCTGGTTGTTTCTCCTAGACACAAGCACCAGCATGGGTGA
CCCGTACGCCCATCCAGCCCTCCTTGATGACCTTCCTTCAAGTATACAag
tccctccaccctccaaACTCCAAGTTGCACAAGAAATAGTAACCTTGCTG
GTGGCAGCGCAGGCAGTGGCGGAGTCAGGGAGGGCCACTCGAAAGTGCCA
AATCGGGGCCTGTGCCTTTGGAACCGACGAGACATCTCACCCGCTCGAAG
CGCTGGGGGCAGGGTATGAGAATTTGCTCGaggtctcccccctccacccc
ctggATTTTGGGCGTTTGCTGGACgtgctccacctccctccctctcgtac
TGGCGTCAAAGGCGACATACTGGCCGGTCTGATCCTGGCAGTGGACCGGC
TGAAAGCCCGGACGGAGGTGTTGGGCAAACGCTGCCACCGGCATTTGGTG
GTTGTGACTGACGCGTGCTCGGCTctgcgggaggtggagggcctagaggt
ggtggtggaacaGGTTGGAGGGATGCAGCAAGCCTGGTTGTTTCTCCTAG
ACACAAGCACCAGCATGGGTGACCCGTACGCCCATCCAGCCCTCCTTGAT
GACCTTCCTTCAAGTATACAagtccctccaccctccaaACTCCAAGTTGC
ACAAGAAATAGTAACCTTGCTGGTGGCAGCGCAGGCAGTGGCGGAGTCAG
GGAGGGCCACTCGAAAGTGCCAAATCGGGGCCTGTGCCTTTGGAACCGAC
GAGACATCTCACCCGCTCGAAGCGCTGGGGGCAGGGTATGAGAATTTGCT
CGaggtctcccccctccaccccctggATTTTGGGCGTTTGCTGGACgtgc
tccacctccctccctctcgtacTGGCGTCAAAGGCGACATACTGGCCGGT
CTGATCCTGGCAGTGGACCGGCTGAAAGCCCGGACGGAGGTGTTGGGCAA
ACGCTGCCACCGGCATTTGGTGGTTGTGACTGACGCGTGCTCGGCTctgc
gggaggtggagggcctagaggtggtggtggaacaGGTTGGAGGG
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Synonyms
Publications