EWM29484.1, cds1189 (CDS) Nannochloropsis gaditana

Overview
NameEWM29484.1
Unique Namecds1189
TypeCDS
OrganismNannochloropsis gaditana (N. gaditana B-31)
Alignment locationCM002456.1:1437560..1437737 +
Alignment locationCM002456.1:1437896..1438239 +

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Properties
Property NameValue
End range.
End range1438239
Protein idEWM29484.1
Producthypothetical protein
Partialtrue
Orig transcript idgnl|cribi|Naga_100928g4.10504.mrna
GbkeyCDS
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
CM002456.1supercontigCM002456.1:1437560..1437737 +
CM002456.1supercontigCM002456.1:1437896..1438239 +
Analyses
This CDS is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST analysis for N. gaditana B-312020-04-07
InterPro analysis for N. gaditana B-312020-04-06
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
The following terms have been associated with this CDS:
Vocabulary: INTERPRO
TermDefinition
IPR002035VWF_A
Homology
[Close]
BLAST of EWM29484.1 vs. NCBI_GenBank
Match: gi|585112030|gb|EWM29484.1| (hypothetical protein Naga_100928g4, partial [Nannochloropsis gaditana])

HSP 1 Score: 348.977 bits (894), Expect = 1.347e-121
Identity = 174/174 (100.00%), Postives = 174/174 (100.00%), Query Frame = 0 
Query:    1 MQQAWLFLLDTSTSMGDPYAHPALLDDLPSSIQVPPPSKLQVAQEIVTLLVAAQAVAESGRATRKCQIGACAFGTDETSHPLEALGAGYENLLEVSPLHPLDFGRLLDVLHLPPSRTGVKGDILAGLILAVDRLKARTEVLGKRCHRHLVVVTDACSALREVEGLEVVVEQVGG 174
            MQQAWLFLLDTSTSMGDPYAHPALLDDLPSSIQVPPPSKLQVAQEIVTLLVAAQAVAESGRATRKCQIGACAFGTDETSHPLEALGAGYENLLEVSPLHPLDFGRLLDVLHLPPSRTGVKGDILAGLILAVDRLKARTEVLGKRCHRHLVVVTDACSALREVEGLEVVVEQVGG
Sbjct:    1 MQQAWLFLLDTSTSMGDPYAHPALLDDLPSSIQVPPPSKLQVAQEIVTLLVAAQAVAESGRATRKCQIGACAFGTDETSHPLEALGAGYENLLEVSPLHPLDFGRLLDVLHLPPSRTGVKGDILAGLILAVDRLKARTEVLGKRCHRHLVVVTDACSALREVEGLEVVVEQVGG 174
[Close]
BLAST of EWM29484.1 vs. NCBI_GenBank
Match: gi|170084897|ref|XP_001873672.1| (predicted protein [Laccaria bicolor S238N-H82] >gi|164651224|gb|EDR15464.1| predicted protein [Laccaria bicolor S238N-H82])

HSP 1 Score: 62.7734 bits (151), Expect = 8.000e-9
Identity = 53/179 (29.61%), Postives = 86/179 (48.04%), Query Frame = 0 
Query:    6 LFLLDTSTSMGDPYAHPALLDDLPSSIQVPPP----------SKLQVAQEIVTLLVAAQAVAESGRATRKCQIGACAFGTDETSHPLEALGAGYENLLEVSPLHPLDFGRLLDVLHLPPSRTGVKGDILAGLILAVDRLKARTEVLGKRCHRHLVVVTDACSALREVEGLEVVVEQVGG 174
            +FL+DTS SMG              +I +PP           + L+ A + + L +  Q +  +GR T +C  G   FG++ET++ +     GYEN++E  P+   + G L  +  L PS   V GD +  LI+ ++  +A      K   R +++VTD  S + EVE  E  V ++ G
Sbjct:   12 MFLVDTSPSMG-----------TLRTIDLPPGPDGECRTANLTNLEWALQFIKLKI--QEMIFNGRKTDQC--GVIVFGSEETNNIVNEKNGGYENVIEYIPIGQPNAGTLAKIDALQPS--SVSGDPIDALIVGIET-QANYLSSKKTWTRKVIMVTDGESPI-EVEDWEATVAKMDG 171
The following BLAST results are available for this feature:
BLAST of EWM29484.1 vs. NCBI_GenBank
Analysis Date: 2020-04-07 (BLAST analysis for N. gaditana B-31)
Total hits: 2
Match NameE-valueIdentityDescription
gi|585112030|gb|EWM29484.1|1.347e-121100.00hypothetical protein Naga_100928g4, partial [Nanno... [more]
gi|170084897|ref|XP_001873672.1|8.000e-929.61predicted protein [Laccaria bicolor S238N-H82] >gi... [more]
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Relationships

This CDS is a part of the following mRNA feature(s):

Feature NameUnique NameSpeciesType
rna1190rna1190Nannochloropsis gaditana (N. gaditana B-31)mRNA


Sequences
Synonyms
Publications