rna1189, rna1189 (mRNA) Nannochloropsis gaditana | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	rna1189
Unique Name	rna1189
Type	mRNA
Organism	Nannochloropsis gaditana (N. gaditana B-31)
Sequence length	1657
Alignment location	CM002456.1:1435403..1437200 -

Link to JBrowse

Properties


Property Name	Value
Product	hypothetical protein
Orig transcript id	gnl\|cribi\|Naga_100928g3.10506.mrna
Orig protein id	gnl\|cribi\|Naga_100928g3.10506
Gbkey	mRNA
Note	encoded by transcript variant 1; alternatively spliced

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
CM002456.1	supercontig	CM002456.1:1435403..1437200 -

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. gaditana B-31	2014-02-18

Annotated Terms

Homology

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
Naga_100928g3	gene1144	Nannochloropsis gaditana (N. gaditana B-31)	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
rna1189	rna1189-protein	Nannochloropsis gaditana (N. gaditana B-31)	polypeptide

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
EWM29486.1	cds1188	Nannochloropsis gaditana (N. gaditana B-31)	CDS

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at CM002456.1:1435403..1437200-
coding sequence from alignment at CM002456.1:1435403..1437200-

mRNA sequence

>rna1189 ID=rna1189|Name=rna1189|organism=Nannochloropsis gaditana|type=mRNA|length=1657bp
GTTCCCCCCGGACATTCAGCACAACAACACAGCCGTGCCACAAATCCCCA
CCTTGTCTCATTACCAAACGTACACAGTGATAGCGGACGGCAGGAAAGCT
GGCATGTGGAGACCTGTGCCTGTCTTCATCCTCCTCCTTGTTCTCCCTGT
GGTCGTTTATGCCTTCGTCTCTCCTGCTCGAGTACCCTCATCGTGCACCC
TGCCATCCTCCTCTATCATCACGGCCACGTGTCTTGCACCCTCCCTCATC
CACCGTCTTGCCACATCCGAGGACGATCCTCCTCCACCACCCACAACGCT
GGTCGACAAGCTGTTTTCCCTTTTTTTTGGGGCCAAGGAGGCGAAACCTT
TAGGATTTGCCCGCATTTCCGTCGAGTCGTCTCCCGAGGTCTACCCTGCG
ACGACCAGCATCTTCGCGGACCCCCTACCAGGAGACAGTCGCGACGTGGC
TGCATTGCGCCCGTTGCTCGCCCAGACCCGCTTGGAAAAAGCGCCGCTGA
ACCTGATCTACGACGCGGTCCGGGACGGATGGAAAAAAGGGGATTTTCAC
CGAAAAGTGGACAACCGAGGAGCCACCCTGGTCGTAGCCCGGACTCGGGG
AGGCGCCGTGTGCGGGGGGTACAACCCGGAGGTAGGAAGGGAGGGGGAGG
GCGGAGAATGGGCGGGGGGGGTGGACGGAGGGCATGATGCTGCAGAGAAG
GACGCAGGAGGAAGAGGAGGAGTACACCTATACACACACACAAGGAGACA
GCGAAAGGAAAACGGCTTTCATCGCACCCCTTCCTCTCCCGGCATCAGAA
TGCTGAGTTTTCTCCCTCCCTTCCTTCCTCTCTCCCTCCCTCCTTCCTTC
CCTCCTCAGGGCTGGGAAGGCGTCGGGGACGAGCGCCAGTGCATTTCTGC
ATTTCTTTTCACTTGGCCTCAGGGCAAGATGCGGGCGTCTCGGCCCATAA
AGTGCCCGAAAGTGGGGGGAGCCTCGTACGCCGTCGACGACAATCCGGCG
CTGGCCATCAAGTTTGGGTGCGGCGCCTTTTTTTTGGGACGCTTGTTGTA
CCCTTTATCCGTTCTCCTTTCCTTGGTTGTTTGAGGACCAGCAAGACGGC
TGTATGGTGGCCCGTGCAAGTCCGTGCATGGAAAGGCACCCATTGTTTCC
TCCCTCCTTCCCTCCCTCCCTGCCTCTCTTCCCCCTCCTTCCCTCCCCCC
CTCCCTTTCCCCCGTCAGGTATGAAGATTTTTCCCTCAAACTCACCACGG
ACCGAAAAGCCATCAGCAAGCTAGGTTTGGCCTACGCCAAGCTACCCGGA
GGAGCGACCTCTCTTTTCGCGCCCTCGGAGGGAAAAATGGCGGAAATTGT
GGACCTGAAAGTCTACGCGCGCAAGGGTAGATGAAGAGGGCAGGAAGGAG
AGCGGGCGGGAAGGAGGGAGGGAGGGAAGTGTGGAGAGAAAGGAGATGAA
ACTGCAGGTAAACTGGAAAGCACGACGCATGAGAGTGGTTCGTCCATAGG
AACAAAGGGACAGCAACTGCCACTTGTTTTGGCCGCCGTGGGGCAGAGTT
TTCTTTGACGTGTTCCGTGCGTTTACTCTTCGAACGGAACGTTTAAATGA
ACGTTTCGGGCCATTCCGGACGCGTGATCCTCCGAGGGACGTACTCGCTC
CTTGTAT

protein sequence of rna1189

>rna1189-protein ID=rna1189-protein|Name=rna1189|organism=Nannochloropsis gaditana|type=polypeptide|length=359bp
MWRPVPVFILLLVLPVVVYAFVSPARVPSSCTLPSSSIITATCLAPSLIH
RLATSEDDPPPPPTTLVDKLFSLFFGAKEAKPLGFARISVESSPEVYPAT
TSIFADPLPGDSRDVAALRPLLAQTRLEKAPLNLIYDAVRDGWKKGDFHR
KVDNRGATLVVARTRGGAVCGGYNPEVGREGEGGEWAGGVDGGHDAAEKD
AGGRGGVHLYTHTRRQRKENGFHRTPSSPGIRMLSFLPPFLPLSLPPSFP
PQGWEGVGDERQCISAFLFTWPQGKMRASRPIKCPKVGGASYAVDDNPAL
AIKFGYEDFSLKLTTDRKAISKLGLAYAKLPGGATSLFAPSEGKMAEIVD
LKVYARKGR

mRNA from alignment at CM002456.1:1435403..1437200-

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>rna1189 ID=rna1189|Name=rna1189|organism=Nannochloropsis gaditana|type=mRNA|length=1798bp|location=Sequence derived from alignment at CM002456.1:1435403..1437200- (Nannochloropsis gaditana)
GTACACAGTGATAGCGGACGGCAGGAAAGCTGGCATGTGGAGACCTGTGC
CTGTCTTCATCCTCCTCCTTGTTCTCCCTGTGGTCGTTTATGCCTTCGTC
TCTCCTGCTCGAGTACCCTCATCGTGCACCCTGCCATCCTCCTCTATCAT
CACGGCCACGTGTCTTGCACCCTCCCTCATCCACCGTCTTGCCACATCCG
AGGACGATCCTCCTCCACCACCCACAACGCTGGTCGACAAGCTGTTTTCC
CTTTTTTTTGGGGCCAAGGAGGCGAAACCTTTAGGATTTGCCCGCATTTC
CGTCGAGTCGTCTCCCGAGGTCTACCCTGCGACGACCAGCATCTTCGCGG
ACCCCCTACCAGGAGACAGGTAGGTTAGAAGGAAATAATGCATGCAACAC
ATTTCTACGGAATATAGCGCTCTTGATCCTTTAGCATGGAGTGTGTATTG
CTAGGGAAGGTAGCGCGCTTGATCCCTCAGCATGGTGTGCCTCTTTTCTC
TGGGTACGGAATCGTGCAAGCACATGCACCACCCATCGACGGATTCTCCC
TGCCCCTTCCTTTCTCCTTGTCTCCCAAGTCGCGACGTGGCTGCATTGCG
CCCGTTGCTCGCCCAGACCCGCTTGGAAAAAGCGCCGCTGAACCTGATCT
ACGACGCGGTCCGGGACGGATGGAAAAAAGGGGATTTTCACCGAAAAGTG
GACAACCGAGGAGCCACCCTGGTCGTAGCCCGGACTCGGGGAGGCGCCGT
GTGCGGGGGGTACAACCCGGAGGTAGGAAGGGAGGGGGAGGGCGGAGAAT
GGGCGGGGGGGGTGGACGGAGGGCATGATGCTGCAGAGAAGGACGCAGGA
GGAAGAGGAGGAGTACACCTATACACACACACAAGGAGACAGCGAAAGGA
AAACGGCTTTCATCGCACCCCTTCCTCTCCCGGCATCAGAATGCTGAGTT
TTCTCCCTCCCTTCCTTCCTCTCTCCCTCCCTCCTTCCTTCCCTCCTCAG
GGCTGGGAAGGCGTCGGGGACGAGCGCCAGTGCATTTCTGCATTTCTTTT
CACTTGGCCTCAGGGCAAGATGCGGGCGTCTCGGCCCATAAAGTGCCCGA
AAGTGGGGGGAGCCTCGTACGCCGTCGACGACAATCCGGCGCTGGCCATC
AAGTTTGGGTGCGGCGCCTTTTTTTTGGGACGCTTGTTGTACCCTTTATC
CGTTCTCCTTTCCTTGGTTGTTTGAGGACCAGCAAGACGGCTGTATGGTG
GCCCGTGCAAGTCCGTGCATGGAAAGGCACCCATTGTTTCCTCCCTCCTT
CCCTCCCTCCCTGCCTCTCTTCCCCCTCCTTCCCTCCCCCCCTCCCTTTC
CCCCGTCAGGTATGAAGATTTTTCCCTCAAACTCACCACGGACCGAAAAG
CCATCAGCAAGCTAGGTTTGGCCTACGCCAAGCTACCCGGAGGAGCGACC
TCTCTTTTCGCGCCCTCGGAGGGAAAAATGGCGGAAATTGTGGACCTGAA
AGTCTACGCGCGCAAGGGTAGATGAAGAGGGCAGGAAGGAGAGCGGGCGG
GAAGGAGGGAGGGAGGGAAGTGTGGAGAGAAAGGAGATGAAACTGCAGGT
AAACTGGAAAGCACGACGCATGAGAGTGGTTCGTCCATAGGAACAAAGGG
ACAGCAACTGCCACTTGTTTTGGCCGCCGTGGGGCAGAGTTTTCTTTGAC
GTGTTCCGTGCGTTTACTCTTCGAACGGAACGTTTAAATGAACGTTTCGG
GCCATTCCGGACGCGTGATCCTCCGAGGGACGTACTCGCTCCTTGTAT

Coding sequence (CDS) from alignment at CM002456.1:1435403..1437200-

>rna1189 ID=rna1189|Name=rna1189|organism=Nannochloropsis gaditana|type=CDS|length=3240bp|location=Sequence derived from alignment at CM002456.1:1435403..1437200- (Nannochloropsis gaditana)
GTATGAAGATTTTTCCCTCAAACTCACCACGGACCGAAAAGCCATCAGCA
AGCTAGGTTTGGCCTACGCCAAGCTACCCGGAGGAGCGACCTCTCTTTTC
GCGCCCTCGGAGGGAAAAATGGCGGAAATTGTGGACCTGAAAGTCTACGC
GCGCAAGGGTAGATGATCGCGACGTGGCTGCATTGCGCCCGTTGCTCGCC
CAGACCCGCTTGGAAAAAGCGCCGCTGAACCTGATCTACGACGCGGTCCG
GGACGGATGGAAAAAAGGGGATTTTCACCGAAAAGTGGACAACCGAGGAG
CCACCCTGGTCGTAGCCCGGACTCGGGGAGGCGCCGTGTGCGGGGGGTAC
AACCCGGAGGTAGGAAGGGAGGGGGAGGGCGGAGAATGGGCGGGGGGGGT
GGACGGAGGGCATGATGCTGCAGAGAAGGACGCAGGAGGAAGAGGAGGAG
TACACCTATACACACACACAAGGAGACAGCGAAAGGAAAACGGCTTTCAT
CGCACCCCTTCCTCTCCCGGCATCAGAATGCTGAGTTTTCTCCCTCCCTT
CCTTCCTCTCTCCCTCCCTCCTTCCTTCCCTCCTCAGGGCTGGGAAGGCG
TCGGGGACGAGCGCCAGTGCATTTCTGCATTTCTTTTCACTTGGCCTCAG
GGCAAGATGCGGGCGTCTCGGCCCATAAAGTGCCCGAAAGTGGGGGGAGC
CTCGTACGCCGTCGACGACAATCCGGCGCTGGCCATCAAGTTTGGATGTG
GAGACCTGTGCCTGTCTTCATCCTCCTCCTTGTTCTCCCTGTGGTCGTTT
ATGCCTTCGTCTCTCCTGCTCGAGTACCCTCATCGTGCACCCTGCCATCC
TCCTCTATCATCACGGCCACGTGTCTTGCACCCTCCCTCATCCACCGTCT
TGCCACATCCGAGGACGATCCTCCTCCACCACCCACAACGCTGGTCGACA
AGCTGTTTTCCCTTTTTTTTGGGGCCAAGGAGGCGAAACCTTTAGGATTT
GCCCGCATTTCCGTCGAGTCGTCTCCCGAGGTCTACCCTGCGACGACCAG
CATCTTCGCGGACCCCCTACCAGGAGACAGGTATGAAGATTTTTCCCTCA
AACTCACCACGGACCGAAAAGCCATCAGCAAGCTAGGTTTGGCCTACGCC
AAGCTACCCGGAGGAGCGACCTCTCTTTTCGCGCCCTCGGAGGGAAAAAT
GGCGGAAATTGTGGACCTGAAAGTCTACGCGCGCAAGGGTAGATGATCGC
GACGTGGCTGCATTGCGCCCGTTGCTCGCCCAGACCCGCTTGGAAAAAGC
GCCGCTGAACCTGATCTACGACGCGGTCCGGGACGGATGGAAAAAAGGGG
ATTTTCACCGAAAAGTGGACAACCGAGGAGCCACCCTGGTCGTAGCCCGG
ACTCGGGGAGGCGCCGTGTGCGGGGGGTACAACCCGGAGGTAGGAAGGGA
GGGGGAGGGCGGAGAATGGGCGGGGGGGGTGGACGGAGGGCATGATGCTG
CAGAGAAGGACGCAGGAGGAAGAGGAGGAGTACACCTATACACACACACA
AGGAGACAGCGAAAGGAAAACGGCTTTCATCGCACCCCTTCCTCTCCCGG
CATCAGAATGCTGAGTTTTCTCCCTCCCTTCCTTCCTCTCTCCCTCCCTC
CTTCCTTCCCTCCTCAGGGCTGGGAAGGCGTCGGGGACGAGCGCCAGTGC
ATTTCTGCATTTCTTTTCACTTGGCCTCAGGGCAAGATGCGGGCGTCTCG
GCCCATAAAGTGCCCGAAAGTGGGGGGAGCCTCGTACGCCGTCGACGACA
ATCCGGCGCTGGCCATCAAGTTTGGATGTGGAGACCTGTGCCTGTCTTCA
TCCTCCTCCTTGTTCTCCCTGTGGTCGTTTATGCCTTCGTCTCTCCTGCT
CGAGTACCCTCATCGTGCACCCTGCCATCCTCCTCTATCATCACGGCCAC
GTGTCTTGCACCCTCCCTCATCCACCGTCTTGCCACATCCGAGGACGATC
CTCCTCCACCACCCACAACGCTGGTCGACAAGCTGTTTTCCCTTTTTTTT
GGGGCCAAGGAGGCGAAACCTTTAGGATTTGCCCGCATTTCCGTCGAGTC
GTCTCCCGAGGTCTACCCTGCGACGACCAGCATCTTCGCGGACCCCCTAC
CAGGAGACAGGTATGAAGATTTTTCCCTCAAACTCACCACGGACCGAAAA
GCCATCAGCAAGCTAGGTTTGGCCTACGCCAAGCTACCCGGAGGAGCGAC
CTCTCTTTTCGCGCCCTCGGAGGGAAAAATGGCGGAAATTGTGGACCTGA
AAGTCTACGCGCGCAAGGGTAGATGATCGCGACGTGGCTGCATTGCGCCC
GTTGCTCGCCCAGACCCGCTTGGAAAAAGCGCCGCTGAACCTGATCTACG
ACGCGGTCCGGGACGGATGGAAAAAAGGGGATTTTCACCGAAAAGTGGAC
AACCGAGGAGCCACCCTGGTCGTAGCCCGGACTCGGGGAGGCGCCGTGTG
CGGGGGGTACAACCCGGAGGTAGGAAGGGAGGGGGAGGGCGGAGAATGGG
CGGGGGGGGTGGACGGAGGGCATGATGCTGCAGAGAAGGACGCAGGAGGA
AGAGGAGGAGTACACCTATACACACACACAAGGAGACAGCGAAAGGAAAA
CGGCTTTCATCGCACCCCTTCCTCTCCCGGCATCAGAATGCTGAGTTTTC
TCCCTCCCTTCCTTCCTCTCTCCCTCCCTCCTTCCTTCCCTCCTCAGGGC
TGGGAAGGCGTCGGGGACGAGCGCCAGTGCATTTCTGCATTTCTTTTCAC
TTGGCCTCAGGGCAAGATGCGGGCGTCTCGGCCCATAAAGTGCCCGAAAG
TGGGGGGAGCCTCGTACGCCGTCGACGACAATCCGGCGCTGGCCATCAAG
TTTGGATGTGGAGACCTGTGCCTGTCTTCATCCTCCTCCTTGTTCTCCCT
GTGGTCGTTTATGCCTTCGTCTCTCCTGCTCGAGTACCCTCATCGTGCAC
CCTGCCATCCTCCTCTATCATCACGGCCACGTGTCTTGCACCCTCCCTCA
TCCACCGTCTTGCCACATCCGAGGACGATCCTCCTCCACCACCCACAACG
CTGGTCGACAAGCTGTTTTCCCTTTTTTTTGGGGCCAAGGAGGCGAAACC
TTTAGGATTTGCCCGCATTTCCGTCGAGTCGTCTCCCGAGGTCTACCCTG
CGACGACCAGCATCTTCGCGGACCCCCTACCAGGAGACAG

Synonyms

Publications