EWM29486.1, cds1188 (CDS) Nannochloropsis gaditana

Overview
NameEWM29486.1
Unique Namecds1188
TypeCDS
OrganismNannochloropsis gaditana (N. gaditana B-31)
Alignment locationCM002456.1:1436832..1437166 -
Alignment locationCM002456.1:1436043..1436621 -
Alignment locationCM002456.1:1435676..1435841 -

Link to JBrowse

Properties
Property NameValue
Protein idEWM29486.1
Producthypothetical protein
Orig transcript idgnl|cribi|Naga_100928g3.10506.mrna
GbkeyCDS
Noteencoded by transcript variant 1; alternatively spliced
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
CM002456.1supercontigCM002456.1:1436832..1437166 -
CM002456.1supercontigCM002456.1:1436043..1436621 -
CM002456.1supercontigCM002456.1:1435676..1435841 -
Analyses
This CDS is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST analysis for N. gaditana B-312020-04-07
InterPro analysis for N. gaditana B-312020-04-06
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
Homology
BLAST of EWM29486.1 vs. NCBI_GenBank
Match: gi|585112032|gb|EWM29486.1| (hypothetical protein Naga_100928g3 [Nannochloropsis gaditana])

HSP 1 Score: 725.702 bits (1872), Expect = 0.000e+0
Identity = 359/359 (100.00%), Postives = 359/359 (100.00%), Query Frame = 0
Query:    1 MWRPVPVFILLLVLPVVVYAFVSPARVPSSCTLPSSSIITATCLAPSLIHRLATSEDDPPPPPTTLVDKLFSLFFGAKEAKPLGFARISVESSPEVYPATTSIFADPLPGDSRDVAALRPLLAQTRLEKAPLNLIYDAVRDGWKKGDFHRKVDNRGATLVVARTRGGAVCGGYNPEVGREGEGGEWAGGVDGGHDAAEKDAGGRGGVHLYTHTRRQRKENGFHRTPSSPGIRMLSFLPPFLPLSLPPSFPPQGWEGVGDERQCISAFLFTWPQGKMRASRPIKCPKVGGASYAVDDNPALAIKFGYEDFSLKLTTDRKAISKLGLAYAKLPGGATSLFAPSEGKMAEIVDLKVYARKGR 359
            MWRPVPVFILLLVLPVVVYAFVSPARVPSSCTLPSSSIITATCLAPSLIHRLATSEDDPPPPPTTLVDKLFSLFFGAKEAKPLGFARISVESSPEVYPATTSIFADPLPGDSRDVAALRPLLAQTRLEKAPLNLIYDAVRDGWKKGDFHRKVDNRGATLVVARTRGGAVCGGYNPEVGREGEGGEWAGGVDGGHDAAEKDAGGRGGVHLYTHTRRQRKENGFHRTPSSPGIRMLSFLPPFLPLSLPPSFPPQGWEGVGDERQCISAFLFTWPQGKMRASRPIKCPKVGGASYAVDDNPALAIKFGYEDFSLKLTTDRKAISKLGLAYAKLPGGATSLFAPSEGKMAEIVDLKVYARKGR
Sbjct:    1 MWRPVPVFILLLVLPVVVYAFVSPARVPSSCTLPSSSIITATCLAPSLIHRLATSEDDPPPPPTTLVDKLFSLFFGAKEAKPLGFARISVESSPEVYPATTSIFADPLPGDSRDVAALRPLLAQTRLEKAPLNLIYDAVRDGWKKGDFHRKVDNRGATLVVARTRGGAVCGGYNPEVGREGEGGEWAGGVDGGHDAAEKDAGGRGGVHLYTHTRRQRKENGFHRTPSSPGIRMLSFLPPFLPLSLPPSFPPQGWEGVGDERQCISAFLFTWPQGKMRASRPIKCPKVGGASYAVDDNPALAIKFGYEDFSLKLTTDRKAISKLGLAYAKLPGGATSLFAPSEGKMAEIVDLKVYARKGR 359          
BLAST of EWM29486.1 vs. NCBI_GenBank
Match: gi|585112033|gb|EWM29487.1| (hypothetical protein Naga_100928g3 [Nannochloropsis gaditana])

HSP 1 Score: 621.698 bits (1602), Expect = 0.000e+0
Identity = 307/311 (98.71%), Postives = 307/311 (98.71%), Query Frame = 0
Query:    1 MWRPVPVFILLLVLPVVVYAFVSPARVPSSCTLPSSSIITATCLAPSLIHRLATSEDDPPPPPTTLVDKLFSLFFGAKEAKPLGFARISVESSPEVYPATTSIFADPLPGDSRDVAALRPLLAQTRLEKAPLNLIYDAVRDGWKKGDFHRKVDNRGATLVVARTRGGAVCGGYNPEVGREGEGGEWAGGVDGGHDAAEKDAGGRGGVHLYTHTRRQRKENGFHRTPSSPGIRMLSFLPPFLPLSLPPSFPPQGWEGVGDERQCISAFLFTWPQGKMRASRPIKCPKVGGASYAVDDNPALAIKFGYEDFSL 311
            MWRPVPVFILLLVLPVVVYAFVSPARVPSSCTLPSSSIITATCLAPSLIHRLATSEDDPPPPPTTLVDKLFSLFFGAKEAKPLGFARISVESSPEVYPATTSIFADPLPGDSRDVAALRPLLAQTRLEKAPLNLIYDAVRDGWKKGDFHRKVDNRGATLVVARTRGGAVCGGYNPEVGREGEGGEWAGGVDGGHDAAEKDAGGRGGVHLYTHTRRQRKENGFHRTPSSPGIRMLSFLPPFLPLSLPPSFPPQGWEGVGDERQCISAFLFTWPQGKMRASRPIKCPKVGGASYAVDDNPALAIKFG   F L
Sbjct:    1 MWRPVPVFILLLVLPVVVYAFVSPARVPSSCTLPSSSIITATCLAPSLIHRLATSEDDPPPPPTTLVDKLFSLFFGAKEAKPLGFARISVESSPEVYPATTSIFADPLPGDSRDVAALRPLLAQTRLEKAPLNLIYDAVRDGWKKGDFHRKVDNRGATLVVARTRGGAVCGGYNPEVGREGEGGEWAGGVDGGHDAAEKDAGGRGGVHLYTHTRRQRKENGFHRTPSSPGIRMLSFLPPFLPLSLPPSFPPQGWEGVGDERQCISAFLFTWPQGKMRASRPIKCPKVGGASYAVDDNPALAIKFGCGAFFL 311          
BLAST of EWM29486.1 vs. NCBI_GenBank
Match: gi|552823602|ref|XP_005846396.1| (hypothetical protein CHLNCDRAFT_135883 [Chlorella variabilis] >gi|307106047|gb|EFN54294.1| hypothetical protein CHLNCDRAFT_135883 [Chlorella variabilis])

HSP 1 Score: 122.479 bits (306), Expect = 3.470e-30
Identity = 69/142 (48.59%), Postives = 84/142 (59.15%), Query Frame = 0
Query:   45 APSLIHRLATSEDDPPPPPTTLVDKLFSLFFG---AKEAKPLGFARISVESSPEVYPATTSIFADPLPGDSRDVAALRPLLAQTRLEKAPLNLIYDAVRDGWKKGDFHRKVDNRGATLVVARTRGGAVCGGYNPEVGREGEG 183
            A  L  R    E+D       L++  F   FG     +  P G  R+S E++ E+YPA T  FA+ L GD+ DVA LRPLLAQT+LE  PL L YDA +DGW    FH++VD  GA LVVA T GGAV GGYNP  G  G+G
Sbjct:    7 ASQLCWRARAQEED-------LIESFFGRLFGRPALDDPTPFGLKRVSEEAAKELYPAVTDTFAESLSGDNEDVAKLRPLLAQTQLESVPLRLAYDADQDGWTPTAFHQRVDGFGAALVVAETVGGAVVGGYNPR-GEMGKG 140          
BLAST of EWM29486.1 vs. NCBI_GenBank
Match: gi|1189392206|gb|OSX79122.1| (hypothetical protein BU14_0086s0009, partial [Porphyra umbilicalis])

HSP 1 Score: 123.25 bits (308), Expect = 1.582e-29
Identity = 61/110 (55.45%), Postives = 77/110 (70.00%), Query Frame = 0
Query:   67 VDKLFSLFFGAKEAKPLGFARISVESSPEVYPATTSIFADPLPGDSRDVAALRPLLAQTRLEKAPLNLIYDAVRDGWKKGDFHRKVDNRGATLVVARTRGGAVCGGYNPE 176
            +++LF+ FFGA EA+PLG  R   +  PE+YPAT +  A P+ GD  +VA  RPLLA+T+L   PL L YDA  DGW    FH  VD RGA++V+ART GGAVCGGYNP+
Sbjct:    2 IERLFTFFFGAIEAEPLGLKRFDRDRFPELYPATLTETAPPVDGDGPEVALFRPLLARTQLASRPLRLAYDATVDGWTAEAFHGAVDFRGASVVLARTAGGAVCGGYNPK 111          

HSP 2 Score: 77.0258 bits (188), Expect = 1.305e-12
Identity = 47/117 (40.17%), Postives = 60/117 (51.28%), Query Frame = 0
Query:  249 FPPQGWEGVGDERQCISAFLFTWPQGKMRASRPIKCPKVGGASYAVDDNPALAIKFGYEDFSLKLT----------TDRKAISKLGLAYAKLPGGATSLFAPSEGKMAEIVD-LKVY 354
            + P+GW G G+ R  I+AFLFTWP G     RPIK  KVG  + AV D P     FG +   + L            DR A SKLG  + +LP G   LFAP+E      ++ L+VY
Sbjct:  108 YNPKGWVGYGEARGSIAAFLFTWPTGDTAGGRPIKLRKVGRGATAVIDTPEDGPTFGADALVVPLQPPRAGWATDERDRVARSKLGSYFERLPNGRNHLFAPTEAGAGVTLEWLRVY 224          
BLAST of EWM29486.1 vs. NCBI_GenBank
Match: gi|299470005|emb|CBN79182.1| (conserved unknown protein [Ectocarpus siliculosus])

HSP 1 Score: 119.398 bits (298), Expect = 2.308e-27
Identity = 58/112 (51.79%), Postives = 79/112 (70.54%), Query Frame = 0
Query:   66 LVDKLFSLFFGAKEAKPLG-FARISVESSPEVYPATTSIFADPLPGDSRDVAALRPLLAQTRLEKAPLNLIYDAVRDGWKKGDFHRKVDNRGATLVVARTRGGAVCGGYNPE 176
            +++K FS+FFG K+  P G   RI+V+  P+ YPA   + A+P+ GDS+D+A +RPLL QT LE   L L+YDA R+GWK   FH+ VD +G  LVV +T+GGAV GGYNP+
Sbjct:   84 VIEKFFSMFFGNKDDAPGGDLDRITVKKFPDQYPAEKILQAEPVKGDSKDMAVIRPLLKQTELEFRKLKLVYDAKRNGWKPAAFHKGVDFKGPGLVVGKTKGGAVVGGYNPK 195          

HSP 2 Score: 77.7962 bits (190), Expect = 1.692e-12
Identity = 48/111 (43.24%), Postives = 64/111 (57.66%), Query Frame = 0
Query:  249 FPPQGWEGVGDERQCISAFLFTWPQGKMRASRPIKCPKVGGASYAVDDNPALAIKFGYEDFSLKLT--TDRKAISKLGLAYAKLPG--GATSLFAPSE-GKMAEIVDLKVY 354
            + P+GW G G+ R  +SAFLFTW  G     R +K  K+GGA  AV D P     FG + F + +   ++R   SKLG  Y +LP   G  S+FAP + G +AE+VDLK Y
Sbjct:  192 YNPKGWVGYGEYRPGLSAFLFTWRDGDTN-KRAMKLRKIGGAGLAVWDKPECGPLFGSDGFGVGMQKGSERMGRSKLGSYYERLPAAYGGASIFAPGDNGGIAEMVDLKAY 301          
BLAST of EWM29486.1 vs. NCBI_GenBank
Match: gi|546327358|ref|XP_005719256.1| (unnamed protein product [Chondrus crispus] >gi|507115925|emb|CDF39345.1| unnamed protein product [Chondrus crispus])

HSP 1 Score: 113.62 bits (283), Expect = 2.338e-25
Identity = 52/111 (46.85%), Postives = 78/111 (70.27%), Query Frame = 0
Query:   66 LVDKLFSLFFGAKEAKPLGFARISVESSPEVYPATTSIFADPLPGDSRDVAALRPLLAQTRLEKAPLNLIYDAVRDGWKKGDFHRKVDNRGATLVVARTRGGAVCGGYNPE 176
            +V+++++  FGAK+A+P G  R   +  PE+YPAT   FADP+P D+ ++A  RPLLA+T+L+   + L+YDA RDGW    FH  ++ +GA++V+A T  GAV GGYNP+
Sbjct:   66 IVERVYTAIFGAKQAEPFGLKRFDRDRFPELYPATLDEFADPVPADTPEMALFRPLLARTQLQTREIQLLYDANRDGWSADTFHEALNRKGASVVMAST-AGAVFGGYNPK 175          

HSP 2 Score: 72.4034 bits (176), Expect = 1.123e-10
Identity = 48/119 (40.34%), Postives = 64/119 (53.78%), Query Frame = 0
Query:  249 FPPQGWEGVGDERQCISAFLFTWPQGKMRASRP-IKCPKVGGASYAVDDNPALAIKFGYEDFSLKL----------TTDRKAISKLGLAYAKLPGGATSLFAPSEGKMAEIV-DLKVYA 355
            + P+G+ G G+ R   +AFLFTWP G    S+P +K  KVGGA+ AV D P    KFG +   + L            DR A SKLG  Y + P G  +LFA  E    E++ +LKV+A
Sbjct:  172 YNPKGFVGYGESRGSKAAFLFTWPDGD--TSKPAVKLRKVGGAALAVVDEPETGPKFGADSLVVPLRPPRANWGESQKDRIAYSKLGSYYERRPDGGNTLFANGENPKGEVLQELKVFA 288          
BLAST of EWM29486.1 vs. NCBI_GenBank
Match: gi|873220311|emb|CEM35929.1| (unnamed protein product [Vitrella brassicaformis CCMP3155])

HSP 1 Score: 109.383 bits (272), Expect = 5.766e-24
Identity = 60/138 (43.48%), Postives = 81/138 (58.70%), Query Frame = 0
Query:   54 TSEDDPPPPP------------TTLVDKLFSLFFGAK---EAKPLGFARISVESSPEVYPATTSIFADPLPGD--SRDVAALRPLLAQTRLEKAPLNLIYDAVRDGWKKGDFHRKVDNRGATLVVARTRGGAVCGGYN 174
            + ED+P  PP               V K     FG+K   + +PLGF R   E+ PE Y    + +AD LP D  ++D+  +RPLL QTRLE+ P+ LIYDA R GW    FH++VD +G  +V+ARTRGG++CGGYN
Sbjct:   18 SDEDEPLGPPGIAPGRKVYEERDDWVTKAVKFVFGSKALQDPEPLGFKRSGKEAFPEYYGVNLAEWADLLPEDQGNKDLTLIRPLLKQTRLEQRPMQLIYDASRHGWSCRSFHQRVDRKGPCVVLARTRGGSICGGYN 155          

HSP 2 Score: 84.3445 bits (207), Expect = 6.839e-15
Identity = 49/108 (45.37%), Postives = 66/108 (61.11%), Query Frame = 0
Query:  253 GWEGVGDERQCISAFLFTWPQGKMRASRPIKCPKVGGASYAVDDNPALAIKFGYEDFSLKLTTD-----RKAISKLGLAYAKLPGGATSLFAPSEGKMAEIVDLKVYA 355
            GW GVG+ R   SAFLFTWP G   + RP+K PKVGGA  A+ D P   + FG + F + L++      + + SKLG  Y++   G  SLF+  E + AE+V+LKVYA
Sbjct:  158 GWVGVGELRGAASAFLFTWPDGDT-SKRPLKLPKVGGAGVAICDFPDKGVSFGMDGFVVPLSSREPNGPQISYSKLGPYYSRRKDGFPSLFSGVEKRQAELVELKVYA 264          
BLAST of EWM29486.1 vs. NCBI_GenBank
Match: gi|1210523285|dbj|GAX17922.1| (hypothetical protein FisN_18Hh130 [Fistulifera solaris])

HSP 1 Score: 107.071 bits (266), Expect = 3.978e-23
Identity = 67/177 (37.85%), Postives = 91/177 (51.41%), Query Frame = 0
Query:    1 MWRPVPVFILLLVLPVVVYAFVSPARVPSSCTLPSSSIITATCLAPSLIHRLATSEDDPPPPPTTLVDKLFSLFFGAKEAKPLGFARISVESSPEVYPATTSIF-ADPLPGDSRDVAALRPLLAQTRLEKAPLNLIYDAVRDGWKKGDFHRKVDNRGATLVVARTRGGAVCGGYNPE 176
            M+  +P+ +++L+         S A VPS    P  S        P+       ++  P      LV+K+F++FFG  E  PLG  R      PE YPATT+ F  +P+  D+ ++A LRPLL +T LEK  L L YDA RDGW    FH  VD +G  LV   +R G   GGYNP+
Sbjct:    1 MFTRIPLVLIILLR-------FSEAFVPSQKQ-PQPSRSRLNFFFPNKNQPEEPAKQVPVEEEPDLVEKIFTVFFGKPEESPLGLKRFDENRFPEQYPATTTDFDVEPVETDNSEMAYLRPLLRKTNLEKRGLRLTYDANRDGWDPVKFHAAVDKQGGGLVYCESRLGIQAGGYNPK 169          

HSP 2 Score: 65.4698 bits (158), Expect = 2.287e-8
Identity = 41/108 (37.96%), Postives = 60/108 (55.56%), Query Frame = 0
Query:  249 FPPQGWEGVGDERQCISAFLFTWPQGKMRASRPIKCPKVGGASYAVDDNPALAIKFGYEDFSLKLTTD--RKAISKLGLAYAKLPGGATSLFAPSEGKMAEIVDLKVY 354
            + P+GW G G+ R  I+AFLF     + + +R IK  KVGGAS+A  DNP     FG +   + L+ D  + A SKLG  + ++P G  SLF   +    ++  L+VY
Sbjct:  166 YNPKGWVGYGEARGSIAAFLF-----QRQGNRWIKLKKVGGASFAQVDNPESGPSFGADSLVIPLSKDNPKLARSKLGSYFERMPDGGNSLFG--KDASVQLKTLRVY 266          
BLAST of EWM29486.1 vs. NCBI_GenBank
Match: gi|397640225|gb|EJK74003.1| (hypothetical protein THAOC_04348 [Thalassiosira oceanica])

HSP 1 Score: 107.457 bits (267), Expect = 7.803e-23
Identity = 57/129 (44.19%), Postives = 69/129 (53.49%), Query Frame = 0
Query:   68 DKLFSLFFGAKEAKPLGFARISVESS--------------------PEVYPATTSIFADPLPGDSRDVAALRPLLAQTRLEKAPLNLIYDAVRDGWKKGDFHRKVDNRGATLVVARTRGGAVCGGYNPE 176
            D +F +FFG KEAKPLG  R   E                      PE YPA    +ADP+  D   +A LRPLL  T LEK  L LIYDA +DGW    FH KVD +G ++V+  T+ G  CGGYNP+
Sbjct:   91 DPIFGVFFGKKEAKPLGMERFGQEVGQGGQAGQASQNSTIAYLARFPEQYPAVLDEWADPVETDDATMALLRPLLKNTNLEKRALTLIYDANKDGWDPAKFHAKVDKQGGSIVLCTTKSGLKCGGYNPK 219          
BLAST of EWM29486.1 vs. NCBI_GenBank
Match: gi|1210516293|dbj|GAX24791.1| (hypothetical protein FisN_18Lh130 [Fistulifera solaris])

HSP 1 Score: 106.301 bits (264), Expect = 8.538e-23
Identity = 55/112 (49.11%), Postives = 69/112 (61.61%), Query Frame = 0
Query:   66 LVDKLFSLFFGAKEAKPLGFARISVESSPEVYPATTSIF-ADPLPGDSRDVAALRPLLAQTRLEKAPLNLIYDAVRDGWKKGDFHRKVDNRGATLVVARTRGGAVCGGYNPE 176
            LV+K+F++FFG  E  PLG  R      PE YPATT+ F  +P+  D+ ++A LRPLL +T LEK  L L YDA RDGW    FH  VD +G  LV   +R G   GGYNP+
Sbjct:   56 LVEKIFTVFFGKPEESPLGLKRFDENRFPEQYPATTTDFDVEPVETDNSEMAYLRPLLRKTNLEKRGLRLTYDANRDGWDPVKFHAAVDKQGGGLVYCESRLGIQAGGYNPK 167          
The following BLAST results are available for this feature:
BLAST of EWM29486.1 vs. NCBI_GenBank
Analysis Date: 2020-04-07 (BLAST analysis for N. gaditana B-31)
Total hits: 10
Match NameE-valueIdentityDescription
gi|585112032|gb|EWM29486.1|0.000e+0100.00hypothetical protein Naga_100928g3 [Nannochloropsi... [more]
gi|585112033|gb|EWM29487.1|0.000e+098.71hypothetical protein Naga_100928g3 [Nannochloropsi... [more]
gi|552823602|ref|XP_005846396.1|3.470e-3048.59hypothetical protein CHLNCDRAFT_135883 [Chlorella ... [more]
gi|1189392206|gb|OSX79122.1|1.582e-2955.45hypothetical protein BU14_0086s0009, partial [Porp... [more]
gi|299470005|emb|CBN79182.1|2.308e-2751.79conserved unknown protein [Ectocarpus siliculosus][more]
gi|546327358|ref|XP_005719256.1|2.338e-2546.85unnamed protein product [Chondrus crispus] >gi|507... [more]
gi|873220311|emb|CEM35929.1|5.766e-2443.48unnamed protein product [Vitrella brassicaformis C... [more]
gi|1210523285|dbj|GAX17922.1|3.978e-2337.85hypothetical protein FisN_18Hh130 [Fistulifera sol... [more]
gi|397640225|gb|EJK74003.1|7.803e-2344.19hypothetical protein THAOC_04348 [Thalassiosira oc... [more]
gi|1210516293|dbj|GAX24791.1|8.538e-2349.11hypothetical protein FisN_18Lh130 [Fistulifera sol... [more]
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Relationships

This CDS is a part of the following mRNA feature(s):

Feature NameUnique NameSpeciesType
rna1189rna1189Nannochloropsis gaditana (N. gaditana B-31)mRNA


Sequences
Synonyms
Publications