rna1188, rna1188 (mRNA) Nannochloropsis gaditana

Overview
Namerna1188
Unique Namerna1188
TypemRNA
OrganismNannochloropsis gaditana (N. gaditana B-31)
Sequence length1007
Alignment locationCM002456.1:1435403..1437269 -

Link to JBrowse

Properties
Property NameValue
Producthypothetical protein
Orig transcript idgnl|cribi|Naga_100928g3.10507.mrna
Orig protein idgnl|cribi|Naga_100928g3.10507
GbkeymRNA
Noteencoded by transcript variant 2; alternatively spliced
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
CM002456.1supercontigCM002456.1:1435403..1437269 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
Naga_100928g3gene1144Nannochloropsis gaditana (N. gaditana B-31)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
rna1188rna1188-proteinNannochloropsis gaditana (N. gaditana B-31)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
EWM29487.1cds1187Nannochloropsis gaditana (N. gaditana B-31)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>rna1188 ID=rna1188|Name=rna1188|organism=Nannochloropsis gaditana|type=mRNA|length=1007bp
CCCTCCCTCTCTTCCTCTCGCTCACGTGCCCCGCCGTTTCTTGTAGGTGA
ACCGTGCGAACGCGTTGAACAAGTTGCTCGTGGACTGCAACTTCCCTTCG
ATATGCATCCATGGCGGGATGAGCCAAGACGAACGCATCCAGAAGTACAA
CTCGTTCAAAAATTGGGAGAAGCGCTTACTGGTCGCAACGGACCTCTTTG
GACGTGGCATTGATATTCAGCGCGTCAATGTCGTGATCAACTACGACTTT
CCTACGGGCGAGGACGGTTCCGACAGCTATTTGCATAGGGTTGGTCGTGC
CGGTCGCTTTGGGACCAAGGGGCTGGCCATCTCCTTCATCTCCACCCCCG
AAGACGCCGAACAGCTCGCGGCAGTGCAGTCGCGGTTCGAGGTGAAAATC
CCCGAGCTGCCCGACACGATCGAGACGTCGCTCTACATGTGAGCGTGGGG
GCCGCAGGGTGGGAGGGAGGGAAGGGGCAAGGGAAGGCTGCCCTTAAAAA
CATTTCGCAAGGAAGGAGCCAGGATGGGTGTGGGAGCAAGAGCATGCAGG
TGGCGGCTCTTGTGGTGTCGTGGCTGTGGCTGTTGTGGGAGGCAGGGGCC
ATGGCGTGAGGAGAGCGATGTGCCAGACGTCCCGTGTTGTGGGGAGGGGA
AGCATCCCAAAAGGGGAAGGAGGAGGCAGTGTGCCGAGAGGAGGCTTGAT
TGGCGTGGGAAGGAGGGCGGCAGGGCGGGAGGGAGGGAGGGAAAGGAAGG
GAAGTAAGGAGACCGGTTGTAAGGCATAAAAACGCGTGTGAGTGACCTGA
TATGTTTCCTTCCATTGCTGTGCCTCCGAGAAATGGGTGGACAGGACGGG
GAGGATGATTCCAAAGCAAAAGAATACAAGGAGCGAGTACGTCCCTCGGA
GGATCACGCGTCCGGAATGGCCCGAAACGTTCATTTAAACGTTCCGTTCG
AAGAGTAAACGCACGGAACACGTCAAAGAAAACTCTGCCCCACGGCGGCC
AAAACAA
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protein sequence of rna1188

>rna1188-protein ID=rna1188-protein|Name=rna1188|organism=Nannochloropsis gaditana|type=polypeptide|length=326bp
MWRPVPVFILLLVLPVVVYAFVSPARVPSSCTLPSSSIITATCLAPSLIH
RLATSEDDPPPPPTTLVDKLFSLFFGAKEAKPLGFARISVESSPEVYPAT
TSIFADPLPGDSRDVAALRPLLAQTRLEKAPLNLIYDAVRDGWKKGDFHR
KVDNRGATLVVARTRGGAVCGGYNPEVGREGEGGEWAGGVDGGHDAAEKD
AGGRGGVHLYTHTRRQRKENGFHRTPSSPGIRMLSFLPPFLPLSLPPSFP
PQGWEGVGDERQCISAFLFTWPQGKMRASRPIKCPKVGGASYAVDDNPAL
AIKFGCGAFFLGRLLYPLSVLLSLVV
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mRNA from alignment at CM002456.1:1435403..1437269-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>rna1188 ID=rna1188|Name=rna1188|organism=Nannochloropsis gaditana|type=mRNA|length=1867bp|location=Sequence derived from alignment at CM002456.1:1435403..1437269- (Nannochloropsis gaditana)
GTTCCCCCCGGACATTCAGCACAACAACACAGCCGTGCCACAAATCCCCA
CCTTGTCTCATTACCAAACGTACACAGTGATAGCGGACGGCAGGAAAGCT
GGCATGTGGAGACCTGTGCCTGTCTTCATCCTCCTCCTTGTTCTCCCTGT
GGTCGTTTATGCCTTCGTCTCTCCTGCTCGAGTACCCTCATCGTGCACCC
TGCCATCCTCCTCTATCATCACGGCCACGTGTCTTGCACCCTCCCTCATC
CACCGTCTTGCCACATCCGAGGACGATCCTCCTCCACCACCCACAACGCT
GGTCGACAAGCTGTTTTCCCTTTTTTTTGGGGCCAAGGAGGCGAAACCTT
TAGGATTTGCCCGCATTTCCGTCGAGTCGTCTCCCGAGGTCTACCCTGCG
ACGACCAGCATCTTCGCGGACCCCCTACCAGGAGACAGGTAGGTTAGAAG
GAAATAATGCATGCAACACATTTCTACGGAATATAGCGCTCTTGATCCTT
TAGCATGGAGTGTGTATTGCTAGGGAAGGTAGCGCGCTTGATCCCTCAGC
ATGGTGTGCCTCTTTTCTCTGGGTACGGAATCGTGCAAGCACATGCACCA
CCCATCGACGGATTCTCCCTGCCCCTTCCTTTCTCCTTGTCTCCCAAGTC
GCGACGTGGCTGCATTGCGCCCGTTGCTCGCCCAGACCCGCTTGGAAAAA
GCGCCGCTGAACCTGATCTACGACGCGGTCCGGGACGGATGGAAAAAAGG
GGATTTTCACCGAAAAGTGGACAACCGAGGAGCCACCCTGGTCGTAGCCC
GGACTCGGGGAGGCGCCGTGTGCGGGGGGTACAACCCGGAGGTAGGAAGG
GAGGGGGAGGGCGGAGAATGGGCGGGGGGGGTGGACGGAGGGCATGATGC
TGCAGAGAAGGACGCAGGAGGAAGAGGAGGAGTACACCTATACACACACA
CAAGGAGACAGCGAAAGGAAAACGGCTTTCATCGCACCCCTTCCTCTCCC
GGCATCAGAATGCTGAGTTTTCTCCCTCCCTTCCTTCCTCTCTCCCTCCC
TCCTTCCTTCCCTCCTCAGGGCTGGGAAGGCGTCGGGGACGAGCGCCAGT
GCATTTCTGCATTTCTTTTCACTTGGCCTCAGGGCAAGATGCGGGCGTCT
CGGCCCATAAAGTGCCCGAAAGTGGGGGGAGCCTCGTACGCCGTCGACGA
CAATCCGGCGCTGGCCATCAAGTTTGGGTGCGGCGCCTTTTTTTTGGGAC
GCTTGTTGTACCCTTTATCCGTTCTCCTTTCCTTGGTTGTTTGAGGACCA
GCAAGACGGCTGTATGGTGGCCCGTGCAAGTCCGTGCATGGAAAGGCACC
CATTGTTTCCTCCCTCCTTCCCTCCCTCCCTGCCTCTCTTCCCCCTCCTT
CCCTCCCCCCCTCCCTTTCCCCCGTCAGGTATGAAGATTTTTCCCTCAAA
CTCACCACGGACCGAAAAGCCATCAGCAAGCTAGGTTTGGCCTACGCCAA
GCTACCCGGAGGAGCGACCTCTCTTTTCGCGCCCTCGGAGGGAAAAATGG
CGGAAATTGTGGACCTGAAAGTCTACGCGCGCAAGGGTAGATGAAGAGGG
CAGGAAGGAGAGCGGGCGGGAAGGAGGGAGGGAGGGAAGTGTGGAGAGAA
AGGAGATGAAACTGCAGGTAAACTGGAAAGCACGACGCATGAGAGTGGTT
CGTCCATAGGAACAAAGGGACAGCAACTGCCACTTGTTTTGGCCGCCGTG
GGGCAGAGTTTTCTTTGACGTGTTCCGTGCGTTTACTCTTCGAACGGAAC
GTTTAAATGAACGTTTCGGGCCATTCCGGACGCGTGATCCTCCGAGGGAC
GTACTCGCTCCTTGTAT
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Coding sequence (CDS) from alignment at CM002456.1:1435403..1437269-

>rna1188 ID=rna1188|Name=rna1188|organism=Nannochloropsis gaditana|type=CDS|length=1962bp|location=Sequence derived from alignment at CM002456.1:1435403..1437269- (Nannochloropsis gaditana)
TCGCGACGTGGCTGCATTGCGCCCGTTGCTCGCCCAGACCCGCTTGGAAA
AAGCGCCGCTGAACCTGATCTACGACGCGGTCCGGGACGGATGGAAAAAA
GGGGATTTTCACCGAAAAGTGGACAACCGAGGAGCCACCCTGGTCGTAGC
CCGGACTCGGGGAGGCGCCGTGTGCGGGGGGTACAACCCGGAGGTAGGAA
GGGAGGGGGAGGGCGGAGAATGGGCGGGGGGGGTGGACGGAGGGCATGAT
GCTGCAGAGAAGGACGCAGGAGGAAGAGGAGGAGTACACCTATACACACA
CACAAGGAGACAGCGAAAGGAAAACGGCTTTCATCGCACCCCTTCCTCTC
CCGGCATCAGAATGCTGAGTTTTCTCCCTCCCTTCCTTCCTCTCTCCCTC
CCTCCTTCCTTCCCTCCTCAGGGCTGGGAAGGCGTCGGGGACGAGCGCCA
GTGCATTTCTGCATTTCTTTTCACTTGGCCTCAGGGCAAGATGCGGGCGT
CTCGGCCCATAAAGTGCCCGAAAGTGGGGGGAGCCTCGTACGCCGTCGAC
GACAATCCGGCGCTGGCCATCAAGTTTGGGTGCGGCGCCTTTTTTTTGGG
ACGCTTGTTGTACCCTTTATCCGTTCTCCTTTCCTTGGTTGTTTGAATGT
GGAGACCTGTGCCTGTCTTCATCCTCCTCCTTGTTCTCCCTGTGGTCGTT
TATGCCTTCGTCTCTCCTGCTCGAGTACCCTCATCGTGCACCCTGCCATC
CTCCTCTATCATCACGGCCACGTGTCTTGCACCCTCCCTCATCCACCGTC
TTGCCACATCCGAGGACGATCCTCCTCCACCACCCACAACGCTGGTCGAC
AAGCTGTTTTCCCTTTTTTTTGGGGCCAAGGAGGCGAAACCTTTAGGATT
TGCCCGCATTTCCGTCGAGTCGTCTCCCGAGGTCTACCCTGCGACGACCA
GCATCTTCGCGGACCCCCTACCAGGAGACAGTCGCGACGTGGCTGCATTG
CGCCCGTTGCTCGCCCAGACCCGCTTGGAAAAAGCGCCGCTGAACCTGAT
CTACGACGCGGTCCGGGACGGATGGAAAAAAGGGGATTTTCACCGAAAAG
TGGACAACCGAGGAGCCACCCTGGTCGTAGCCCGGACTCGGGGAGGCGCC
GTGTGCGGGGGGTACAACCCGGAGGTAGGAAGGGAGGGGGAGGGCGGAGA
ATGGGCGGGGGGGGTGGACGGAGGGCATGATGCTGCAGAGAAGGACGCAG
GAGGAAGAGGAGGAGTACACCTATACACACACACAAGGAGACAGCGAAAG
GAAAACGGCTTTCATCGCACCCCTTCCTCTCCCGGCATCAGAATGCTGAG
TTTTCTCCCTCCCTTCCTTCCTCTCTCCCTCCCTCCTTCCTTCCCTCCTC
AGGGCTGGGAAGGCGTCGGGGACGAGCGCCAGTGCATTTCTGCATTTCTT
TTCACTTGGCCTCAGGGCAAGATGCGGGCGTCTCGGCCCATAAAGTGCCC
GAAAGTGGGGGGAGCCTCGTACGCCGTCGACGACAATCCGGCGCTGGCCA
TCAAGTTTGGGTGCGGCGCCTTTTTTTTGGGACGCTTGTTGTACCCTTTA
TCCGTTCTCCTTTCCTTGGTTGTTTGAATGTGGAGACCTGTGCCTGTCTT
CATCCTCCTCCTTGTTCTCCCTGTGGTCGTTTATGCCTTCGTCTCTCCTG
CTCGAGTACCCTCATCGTGCACCCTGCCATCCTCCTCTATCATCACGGCC
ACGTGTCTTGCACCCTCCCTCATCCACCGTCTTGCCACATCCGAGGACGA
TCCTCCTCCACCACCCACAACGCTGGTCGACAAGCTGTTTTCCCTTTTTT
TTGGGGCCAAGGAGGCGAAACCTTTAGGATTTGCCCGCATTTCCGTCGAG
TCGTCTCCCGAGGTCTACCCTGCGACGACCAGCATCTTCGCGGACCCCCT
ACCAGGAGACAG
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Synonyms
Publications