rna1187, rna1187 (mRNA) Nannochloropsis gaditana

Overview
Namerna1187
Unique Namerna1187
TypemRNA
OrganismNannochloropsis gaditana (N. gaditana B-31)
Sequence length1450
Alignment locationCM002456.1:1433740..1435536 +

Link to JBrowse

Properties
Property NameValue
Productatp-dependent rna helicase uap56
Orig transcript idgnl|cribi|Naga_100928g1.10505.mrna
Orig protein idgnl|cribi|Naga_100928g1.10505
GbkeymRNA
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
CM002456.1supercontigCM002456.1:1433740..1435536 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
Naga_100928g1gene1143Nannochloropsis gaditana (N. gaditana B-31)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
rna1187rna1187-proteinNannochloropsis gaditana (N. gaditana B-31)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
EWM29485.1cds1186Nannochloropsis gaditana (N. gaditana B-31)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>rna1187 ID=rna1187|Name=rna1187|organism=Nannochloropsis gaditana|type=mRNA|length=1450bp
TGCACCATGGGCGAATTTCTAACCGGTGCCCTCCATAAGCCAGCGGAAAA
TCGTGGGCATGTGGGTGGGTAGTGCTTGTGGATGGTCGAGACAGGCATTT
CTGATCATCCTGCGGTGGTTAGGCAAAGAAAGCCTTTTTTATTCACACCA
CCCCTTACGCACTGCCGCTGTGGGACGGAGTTGCTACTCACTATACGTGA
AATGAGGAGCGGCACGAGCCCTGGTGATGCGGCGAAGGCGTGCTGGCGTT
GCGGCGTAAGCAGGCTCGATTGTGGTGTTTATCATGGGATTTGCGGCGGA
CAGGAGCGAAGATTTTTGTTCTTCTTCCCTTCGGTGTTCCCAGCTGAAAG
CCATACGACGCCTGCAGGGACAGGAAGTCACGGGACCACGACGACACACG
TGTCACTGGCTTTGAGGTATATATATCTAGGAGGGGAGTACGGCGTCGTG
GATGCCAGCATTTGCTTGGCAGTAAAGCGGTGAGGAGTTGGGGCGCTTTG
GCTGCTCTGCAGGTGCATGGAGAGAAGGAGCCTGAGAGCTTGTGGTGGAT
AGCTATTCACATTAACAACAACCGCAAGCAACCACGTGGCACATTTTAAC
CGTCATTAAGGCATGCAAAAAGCGACCAGGGGTACCGTGGTCTTTGGAAG
CGAAGCCTTCATGTGAGGGCAAGCCCACGTCGGAAGTTTTGAGCGGGCCT
GACGTTCTTTATCTCTCCCGCCCATGTTATCCGATGAATACTTCCTTGTT
CCTGTGCTTGCTTTTGGGATTGACCGCGGCATGTCCCTGGACAGTGCCTC
TTCCCATATCCTTGTGGGGAGTTTTTGGGACACGGCCATGCTGGAACAGA
TTTTGTCATAAGCTTGCCAGCGGTGGCGAGATCCTTGTGAAGCTGTCGAC
CGCAATACGCGTGTGTTCTGATAGCAATTGGCTTGGCGGCAGTGGCCGAG
ACATTTTCAAATGTGAATCAGATGGCTATTGCTGTGGGCACTTGACTCCT
TCTTGGCGGTTTCCTGGCCCTGCTGACCAAGTTCCTTCTATATCCATCAC
GGCATTCCACCACCTTCCCCCTCTAAACATGCGCAGAAACCTTCTTCATC
TTGGCAATTGTAGTTATGGCAGACACGACGACACCCACCAACGAGGATGA
GCTGGTCGACTACGACGAGGAGAACGAGCAGGAGGAGAAGGGAGCCGAGG
CGGGGGGAGATGAAGGACGCAAAGGTCACTACGTGGGGGTGCATGCGTCG
GGATTCAAGGATTTTCTTTTGAAGGCGGAATTGCTCAGGGCGCTGGTCGA
CTGCGGCTTTGAACATCCCTCGGAAGTGCAACATGAGTGCATTCCGCAGG
CCATATTGGGCATGGATATTGTCTGTCAGGCCAAGTCCGGCATGGGGAAG
ACGGCGGTCTTCGTCCTCTCTACCCTCCACTTGCTGGAGCCCAAGGTAAG
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protein sequence of rna1187

>rna1187-protein ID=rna1187-protein|Name=rna1187|organism=Nannochloropsis gaditana|type=polypeptide|length=107bp
MSQDERIQKYNSFKNWEKRLLVATDLFGRGIDIQRVNVVINYDFPTGEDG
SDSYLHRVGRAGRFGTKGLAISFISTPEDAEQLAAVQSRFEVKIPELPDT
IETSLYM
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mRNA from alignment at CM002456.1:1433740..1435536+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>rna1187 ID=rna1187|Name=rna1187|organism=Nannochloropsis gaditana|type=mRNA|length=1797bp|location=Sequence derived from alignment at CM002456.1:1433740..1435536+ (Nannochloropsis gaditana)
ccctccctctcttcctctcgctcACGTGCCCCGCCGTTTCTTGTAGGTGA
ACCGTGCGAACGCGTTGAACAAGTTGCTCGTGGACTGCAACTTCCCTTCG
ATATGCATCCATGGCGGGATGAGCCAAGACGAACGGTAGGGAAAGATAGa
tgcaggggggaaggaaagccaggaTCACATGTGTGACTGCGGGAATGGCT
GCGACAATGCCGTCGAGGGGGACGAGCTGAAGACATTgcttctcttcttc
atccttttccgcgcctttttttcccgcTTCTGCCCTTCCCACTTGTCTTT
TATTCGCAGCATCCAGAAGTACAACTCGTTCAAAAATTGGGAGAAGCGCT
TACTGGTCGCAACGGACCTCTTTGGACGTGGCATTGATATTCAGCGCGTC
AATGTCGTGATCAACTACGACTTTCCTACGGTAGGAGCTGTCgggcttct
ccttccctccctctatcccccccttccctccctccgcccttccctctcat
GTATGGCGCATTTTGACTTTGGTTTCTTGatgccccgtcctccacgggTG
CTGCGGCATatcagggggaaaagagtGCATATTCTTCCTTGTTGACTCCA
TGATCTCGGCAAAGAACGAACCCGTGAATGGTATAGGCGAGCTCCTCCTA
TTGCCCGGCCCAAATCGGATAAGCATGGCCAGCGGGGGCAGAGACGCCTG
TGATTGGATGCAAAGACGTCGACTGaacctttttctccctccctccctcc
cgccctccctccgtccctctctcccttccatcctttttTCCGCCTGTAGG
GCGAGGACGGTTCCGACAGCTATTTGCATAGGGTTGGTCGTGCCGGTCGC
TTTGGGACCAAGGGGCTGGCcatctccttcatctccacCCCCGAAGACGC
CGAACAGCTCGCGGCAGTGCAGTCGCGGTtcgaggtagggagggacggaa
ggagggcggggaagtgggaggagaggacgcgggCTCCAGGGTCACGACCT
CGGAGGAGACTTCTTTCCAGGTTGCTGGCGGGGTAGATAGTGTTTGGTGG
GAAACCGATGGGTTTCGGCGGTGATCGAGCGGCAAGCAGGCTGGGCCGTC
GGCCTGTTTTTCTGGGAAAGACGTGccggtgggggaggatgtTCCTCAAG
TTCTCACGCTTGCTCTATGGCTATCCTCCAGGTGAAAATCCCCGAGCTGC
CCGACACGATCGAGACGTCGCTCTACATGTGAGCGTGGGGGCcgcagggt
gggagggagggaaggggcaagggaaggcTGCCCTTAAAAACATTTCGCAA
GGAAGGAGCCAGGATGGGTGTGGGAGCAAGAGCATGCAGGTGGCGGCTCT
TGTGGTGTCGTGGCTGTGGCTGTtgtgggaggcaggggccatGGCGTGAG
GAGAGCGATGTGCCAGACGTCCCGTGttgtggggaggggaagcatcccaa
aaggggaaggaggaggcagtgtgCCGAGAGGAGGCTTGATTggcgtggga
aggagggcggcagggcgggagggagggagggaaaggaagggaagtaAGGA
GACCGGTTGTAAGGCATAAAAACGCGTGTGAGTGACCTGATATGTTTCCT
TCCATTGCTGTGCCTCCGAGAAATGGGTGGacaggacggggaggatgatT
CCAAAGCAAAAGAATACAAGGAGCGAGTACGTCCCTCGGAGGATCACGCG
TCCGGAATGGCCCGAAACGTTCATTTAAACGTTCCGTTCGAAGAGTAAAC
GCACGGAACACGTCAAAGAAAACTCTGCCCCACGGCGGCCAAAACAA
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Coding sequence (CDS) from alignment at CM002456.1:1433740..1435536+

>rna1187 ID=rna1187|Name=rna1187|organism=Nannochloropsis gaditana|type=CDS|length=1296bp|location=Sequence derived from alignment at CM002456.1:1433740..1435536+ (Nannochloropsis gaditana)
ATGAGCCAAGACGAACGCATCCAGAAGTACAACTCGTTCAAAAATTGGGA
GAAGCGCTTACTGGTCGCAACGGACCTCTTTGGACGTGGCATTGATATTC
AGCGCGTCAATGTCGTGATCAACTACGACTTTCCTACGGGCGAGGACGGT
TCCGACAGCTATTTGCATAGGGTTGGTCGTGCCGGTCGCTTTGGGACCAA
GGGGCTGGCcatctccttcatctccacCCCCGAAGACGCCGAACAGCTCG
CGGCAGTGCAGTCGCGGTtcgagGTGAAAATCCCCGAGCTGCCCGACACG
ATCGAGACGTCGCTCTACATGTGAATGAGCCAAGACGAACGCATCCAGAA
GTACAACTCGTTCAAAAATTGGGAGAAGCGCTTACTGGTCGCAACGGACC
TCTTTGGACGTGGCATTGATATTCAGCGCGTCAATGTCGTGATCAACTAC
GACTTTCCTACGGGCGAGGACGGTTCCGACAGCTATTTGCATAGGGTTGG
TCGTGCCGGTCGCTTTGGGACCAAGGGGCTGGCcatctccttcatctcca
cCCCCGAAGACGCCGAACAGCTCGCGGCAGTGCAGTCGCGGTtcgagGTG
AAAATCCCCGAGCTGCCCGACACGATCGAGACGTCGCTCTACATGTGAAT
GAGCCAAGACGAACGCATCCAGAAGTACAACTCGTTCAAAAATTGGGAGA
AGCGCTTACTGGTCGCAACGGACCTCTTTGGACGTGGCATTGATATTCAG
CGCGTCAATGTCGTGATCAACTACGACTTTCCTACGGGCGAGGACGGTTC
CGACAGCTATTTGCATAGGGTTGGTCGTGCCGGTCGCTTTGGGACCAAGG
GGCTGGCcatctccttcatctccacCCCCGAAGACGCCGAACAGCTCGCG
GCAGTGCAGTCGCGGTtcgagGTGAAAATCCCCGAGCTGCCCGACACGAT
CGAGACGTCGCTCTACATGTGAATGAGCCAAGACGAACGCATCCAGAAGT
ACAACTCGTTCAAAAATTGGGAGAAGCGCTTACTGGTCGCAACGGACCTC
TTTGGACGTGGCATTGATATTCAGCGCGTCAATGTCGTGATCAACTACGA
CTTTCCTACGGGCGAGGACGGTTCCGACAGCTATTTGCATAGGGTTGGTC
GTGCCGGTCGCTTTGGGACCAAGGGGCTGGCcatctccttcatctccacC
CCCGAAGACGCCGAACAGCTCGCGGCAGTGCAGTCGCGGTtcgagGTGAA
AATCCCCGAGCTGCCCGACACGATCGAGACGTCGCTCTACATGTGA
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Synonyms
Publications