EWM29485.1, cds1186 (CDS) Nannochloropsis gaditana

Overview
NameEWM29485.1
Unique Namecds1186
TypeCDS
OrganismNannochloropsis gaditana (N. gaditana B-31)
Alignment locationCM002456.1:1433858..1433874 +
Alignment locationCM002456.1:1434049..1434169 +
Alignment locationCM002456.1:1434539..1434673 +
Alignment locationCM002456.1:1434921..1434971 +

Link to JBrowse

Properties
Property NameValue
Protein idEWM29485.1
Productatp-dependent rna helicase uap56
Orig transcript idgnl|cribi|Naga_100928g1.10505.mrna
GbkeyCDS
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
CM002456.1supercontigCM002456.1:1433858..1433874 +
CM002456.1supercontigCM002456.1:1434049..1434169 +
CM002456.1supercontigCM002456.1:1434539..1434673 +
CM002456.1supercontigCM002456.1:1434921..1434971 +
Analyses
This CDS is derived from or has results from the following analyses
Analysis NameDate Performed
GO annotation for N. gaditana B312020-04-08
BLAST analysis for N. gaditana B-312020-04-07
InterPro analysis for N. gaditana B-312020-04-06
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
The following terms have been associated with this CDS:
Vocabulary: Molecular Function
TermDefinition
GO:0016787hydrolase activity
GO:0000166nucleotide binding
GO:0003676nucleic acid binding
Vocabulary: INTERPRO
TermDefinition
IPR027417P-loop_NTPase
IPR001650Helicase_C
Homology
[Close]
BLAST of EWM29485.1 vs. NCBI_GenBank
Match: gi|585112031|gb|EWM29485.1| (atp-dependent rna helicase uap56 [Nannochloropsis gaditana])

HSP 1 Score: 222.631 bits (566), Expect = 9.368e-74
Identity = 107/107 (100.00%), Postives = 107/107 (100.00%), Query Frame = 0 
Query:    1 MSQDERIQKYNSFKNWEKRLLVATDLFGRGIDIQRVNVVINYDFPTGEDGSDSYLHRVGRAGRFGTKGLAISFISTPEDAEQLAAVQSRFEVKIPELPDTIETSLYM 107
            MSQDERIQKYNSFKNWEKRLLVATDLFGRGIDIQRVNVVINYDFPTGEDGSDSYLHRVGRAGRFGTKGLAISFISTPEDAEQLAAVQSRFEVKIPELPDTIETSLYM
Sbjct:    1 MSQDERIQKYNSFKNWEKRLLVATDLFGRGIDIQRVNVVINYDFPTGEDGSDSYLHRVGRAGRFGTKGLAISFISTPEDAEQLAAVQSRFEVKIPELPDTIETSLYM 107
[Close]
BLAST of EWM29485.1 vs. NCBI_GenBank
Match: gi|443894078|dbj|GAC71428.1| (ATP-dependent RNA helicase [Moesziomyces antarcticus T-34])

HSP 1 Score: 159.844 bits (403), Expect = 8.035e-48
Identity = 74/107 (69.16%), Postives = 91/107 (85.05%), Query Frame = 0 
Query:    1 MSQDERIQKYNSFKNWEKRLLVATDLFGRGIDIQRVNVVINYDFPTGEDGSDSYLHRVGRAGRFGTKGLAISFISTPEDAEQLAAVQSRFEVKIPELPDTIETSLYM 107
            ++Q+ERI++Y  FKN+EKR+LVATD+FGRGID++RVNV I+YD PT    +DSYLHRVGRAGRFGTKGLAI F+S+ EDAE L  +QSRFEV +PELP+TIE S YM
Sbjct:   79 LAQEERIKRYQQFKNFEKRILVATDIFGRGIDVERVNVSISYDTPTD---ADSYLHRVGRAGRFGTKGLAIMFVSSDEDAEVLKQIQSRFEVAVPELPETIEASTYM 182
[Close]
BLAST of EWM29485.1 vs. NCBI_GenBank
Match: gi|675189421|ref|XP_008903595.1| (ATP-dependent RNA helicase uap56, variant [Phytophthora parasitica INRA-310] >gi|566026085|gb|ETI48996.1| ATP-dependent RNA helicase uap56, variant [Phytophthora parasitica P1569] >gi|567963365|gb|ETK88864.1| ATP-dependent RNA helicase uap56, variant [Phytophthora parasitica] >gi|567992063|gb|ETL42262.1| ATP-dependent RNA helicase uap56, variant [Phytophthora parasitica] >gi|568021346|gb|ETL95436.1| ATP-dependent RNA helicase uap56, variant [Phytophthora parasitica] >gi|568051736|gb|ETM48635.1| ATP-dependent RNA helicase uap56, variant [Phytophthora parasitica] >gi|568096361|gb|ETN11112.1| ATP-dependent RNA helicase uap56, variant [Phytophthora parasitica INRA-310] >gi|570329786|gb|ETO77734.1| ATP-dependent RNA helicase uap56, variant [Phytophthora parasitica P1976] >gi|570953506|gb|ETP18763.1| ATP-dependent RNA helicase uap56, variant [Phytophthora parasitica CJ01A1] >gi|570988216|gb|ETP46683.1| ATP-dependent RNA helicase uap56, variant [Phytophthora parasitica P10297])

HSP 1 Score: 164.466 bits (415), Expect = 8.847e-48
Identity = 76/107 (71.03%), Postives = 92/107 (85.98%), Query Frame = 0 
Query:    1 MSQDERIQKYNSFKNWEKRLLVATDLFGRGIDIQRVNVVINYDFPTGEDGSDSYLHRVGRAGRFGTKGLAISFISTPEDAEQLAAVQSRFEVKIPELPDTIETSLYM 107
            +SQ+ERI++Y SFK+++KR+LV TDLFGRG+DI+RVN+V+NYDFP   + SD YLHRVGRAGRFGTKGL+ISFIS+ ED E LA VQSRFEV IPELPD I+ S YM
Sbjct:  239 LSQEERIKRYKSFKDFQKRILVTTDLFGRGMDIERVNIVVNYDFP---NDSDQYLHRVGRAGRFGTKGLSISFISSEEDTEMLAKVQSRFEVNIPELPDQIDISTYM 342
[Close]
BLAST of EWM29485.1 vs. NCBI_GenBank
Match: gi|1214711949|gb|OWZ22923.1| (ATP-dependent RNA helicase [Phytophthora megakarya])

HSP 1 Score: 164.466 bits (415), Expect = 9.438e-48
Identity = 76/107 (71.03%), Postives = 92/107 (85.98%), Query Frame = 0 
Query:    1 MSQDERIQKYNSFKNWEKRLLVATDLFGRGIDIQRVNVVINYDFPTGEDGSDSYLHRVGRAGRFGTKGLAISFISTPEDAEQLAAVQSRFEVKIPELPDTIETSLYM 107
            +SQ+ERI++Y SFK+++KR+LV TDLFGRG+DI+RVN+V+NYDFP   + SD YLHRVGRAGRFGTKGL+ISFIS+ ED E LA VQSRFEV IPELPD I+ S YM
Sbjct:  239 LSQEERIKRYKSFKDFQKRILVTTDLFGRGMDIERVNIVVNYDFP---NDSDQYLHRVGRAGRFGTKGLSISFISSEEDTEMLAKVQSRFEVNIPELPDQIDISTYM 342
[Close]
BLAST of EWM29485.1 vs. NCBI_GenBank
Match: gi|635360398|emb|CCI50269.1| (unnamed protein product [Albugo candida])

HSP 1 Score: 163.696 bits (413), Expect = 1.608e-47
Identity = 76/107 (71.03%), Postives = 93/107 (86.92%), Query Frame = 0 
Query:    1 MSQDERIQKYNSFKNWEKRLLVATDLFGRGIDIQRVNVVINYDFPTGEDGSDSYLHRVGRAGRFGTKGLAISFISTPEDAEQLAAVQSRFEVKIPELPDTIETSLYM 107
            ++Q+ERI++Y SFK+++KRLLV TDLFGRG+DI+RVN+VINYDFP   + SD YLHRVGRAGRFGTKGL+ISFIS+ ED+  LA VQSRFEV IPELPD+I+ S YM
Sbjct:  229 LTQEERIKRYKSFKDFQKRLLVTTDLFGRGMDIERVNIVINYDFP---NDSDQYLHRVGRAGRFGTKGLSISFISSDEDSGMLAQVQSRFEVNIPELPDSIDISTYM 332
[Close]
BLAST of EWM29485.1 vs. NCBI_GenBank
Match: gi|697892552|ref|XP_009691516.1| (DEAD-box family helicase [Theileria orientalis strain Shintoku] >gi|403223084|dbj|BAM41215.1| DEAD-box family helicase [Theileria orientalis strain Shintoku])

HSP 1 Score: 166.777 bits (421), Expect = 1.626e-47
Identity = 75/107 (70.09%), Postives = 92/107 (85.98%), Query Frame = 0 
Query:    1 MSQDERIQKYNSFKNWEKRLLVATDLFGRGIDIQRVNVVINYDFPTGEDGSDSYLHRVGRAGRFGTKGLAISFISTPEDAEQLAAVQSRFEVKIPELPDTIETSLYM 107
            + Q ERI +Y  FKN++KR+LVATDLFGRGID++RVN+VINYD P   D +DSYLHRVGRAGRFGTKGLAI+F+S+PED+  LA VQ RFEV IPE+P+TI+TSLY+
Sbjct:  348 LDQSERISRYTQFKNFDKRILVATDLFGRGIDVERVNIVINYDMP---DSTDSYLHRVGRAGRFGTKGLAITFVSSPEDSSALADVQKRFEVTIPEIPETIDTSLYL 451
[Close]
BLAST of EWM29485.1 vs. NCBI_GenBank
Match: gi|970657133|gb|KUF95057.1| (F-actin-capping protein subunit alpha-2 [Phytophthora nicotianae])

HSP 1 Score: 163.696 bits (413), Expect = 2.352e-47
Identity = 76/107 (71.03%), Postives = 92/107 (85.98%), Query Frame = 0 
Query:    1 MSQDERIQKYNSFKNWEKRLLVATDLFGRGIDIQRVNVVINYDFPTGEDGSDSYLHRVGRAGRFGTKGLAISFISTPEDAEQLAAVQSRFEVKIPELPDTIETSLYM 107
            +SQ+ERI++Y SFK+++KR+LV TDLFGRG+DI+RVN+V+NYDFP   + SD YLHRVGRAGRFGTKGL+ISFIS+ ED E LA VQSRFEV IPELPD I+ S YM
Sbjct:  247 LSQEERIKRYKSFKDFQKRILVTTDLFGRGMDIERVNIVVNYDFP---NDSDQYLHRVGRAGRFGTKGLSISFISSEEDTEMLAKVQSRFEVNIPELPDQIDISTYM 350
[Close]
BLAST of EWM29485.1 vs. NCBI_GenBank
Match: gi|635360399|emb|CCI50270.1| (unnamed protein product [Albugo candida])

HSP 1 Score: 164.081 bits (414), Expect = 5.910e-47
Identity = 76/107 (71.03%), Postives = 93/107 (86.92%), Query Frame = 0 
Query:    1 MSQDERIQKYNSFKNWEKRLLVATDLFGRGIDIQRVNVVINYDFPTGEDGSDSYLHRVGRAGRFGTKGLAISFISTPEDAEQLAAVQSRFEVKIPELPDTIETSLYM 107
            ++Q+ERI++Y SFK+++KRLLV TDLFGRG+DI+RVN+VINYDFP   + SD YLHRVGRAGRFGTKGL+ISFIS+ ED+  LA VQSRFEV IPELPD+I+ S YM
Sbjct:  299 LTQEERIKRYKSFKDFQKRLLVTTDLFGRGMDIERVNIVINYDFP---NDSDQYLHRVGRAGRFGTKGLSISFISSDEDSGMLAQVQSRFEVNIPELPDSIDISTYM 402
[Close]
BLAST of EWM29485.1 vs. NCBI_GenBank
Match: gi|568051735|gb|ETM48634.1| (ATP-dependent RNA helicase uap56 [Phytophthora parasitica])

HSP 1 Score: 164.466 bits (415), Expect = 6.005e-47
Identity = 76/107 (71.03%), Postives = 92/107 (85.98%), Query Frame = 0 
Query:    1 MSQDERIQKYNSFKNWEKRLLVATDLFGRGIDIQRVNVVINYDFPTGEDGSDSYLHRVGRAGRFGTKGLAISFISTPEDAEQLAAVQSRFEVKIPELPDTIETSLYM 107
            +SQ+ERI++Y SFK+++KR+LV TDLFGRG+DI+RVN+V+NYDFP   + SD YLHRVGRAGRFGTKGL+ISFIS+ ED E LA VQSRFEV IPELPD I+ S YM
Sbjct:  323 LSQEERIKRYKSFKDFQKRILVTTDLFGRGMDIERVNIVVNYDFP---NDSDQYLHRVGRAGRFGTKGLSISFISSEEDTEMLAKVQSRFEVNIPELPDQIDISTYM 426
[Close]
BLAST of EWM29485.1 vs. NCBI_GenBank
Match: gi|675189419|ref|XP_008903594.1| (ATP-dependent RNA helicase uap56 [Phytophthora parasitica INRA-310] >gi|566026084|gb|ETI48995.1| ATP-dependent RNA helicase uap56 [Phytophthora parasitica P1569] >gi|567963364|gb|ETK88863.1| ATP-dependent RNA helicase uap56 [Phytophthora parasitica] >gi|567992062|gb|ETL42261.1| ATP-dependent RNA helicase uap56 [Phytophthora parasitica] >gi|568021345|gb|ETL95435.1| ATP-dependent RNA helicase uap56 [Phytophthora parasitica] >gi|568096360|gb|ETN11111.1| ATP-dependent RNA helicase uap56 [Phytophthora parasitica INRA-310] >gi|570329785|gb|ETO77733.1| ATP-dependent RNA helicase uap56 [Phytophthora parasitica P1976] >gi|570953505|gb|ETP18762.1| ATP-dependent RNA helicase uap56 [Phytophthora parasitica CJ01A1] >gi|570988215|gb|ETP46682.1| ATP-dependent RNA helicase uap56 [Phytophthora parasitica P10297] >gi|970628007|gb|KUF75768.1| DEAD-box ATP-dependent RNA helicase 56 [Phytophthora nicotianae] >gi|970664217|gb|KUG01196.1| DEAD-box ATP-dependent RNA helicase 56 [Phytophthora nicotianae])

HSP 1 Score: 164.466 bits (415), Expect = 6.470e-47
Identity = 76/107 (71.03%), Postives = 92/107 (85.98%), Query Frame = 0 
Query:    1 MSQDERIQKYNSFKNWEKRLLVATDLFGRGIDIQRVNVVINYDFPTGEDGSDSYLHRVGRAGRFGTKGLAISFISTPEDAEQLAAVQSRFEVKIPELPDTIETSLYM 107
            +SQ+ERI++Y SFK+++KR+LV TDLFGRG+DI+RVN+V+NYDFP   + SD YLHRVGRAGRFGTKGL+ISFIS+ ED E LA VQSRFEV IPELPD I+ S YM
Sbjct:  323 LSQEERIKRYKSFKDFQKRILVTTDLFGRGMDIERVNIVVNYDFP---NDSDQYLHRVGRAGRFGTKGLSISFISSEEDTEMLAKVQSRFEVNIPELPDQIDISTYM 426
The following BLAST results are available for this feature:
BLAST of EWM29485.1 vs. NCBI_GenBank
Analysis Date: 2020-04-07 (BLAST analysis for N. gaditana B-31)
Total hits: 10
Match NameE-valueIdentityDescription
gi|585112031|gb|EWM29485.1|9.368e-74100.00atp-dependent rna helicase uap56 [Nannochloropsis ... [more]
gi|443894078|dbj|GAC71428.1|8.035e-4869.16ATP-dependent RNA helicase [Moesziomyces antarctic... [more]
gi|675189421|ref|XP_008903595.1|8.847e-4871.03ATP-dependent RNA helicase uap56, variant [Phytoph... [more]
gi|1214711949|gb|OWZ22923.1|9.438e-4871.03ATP-dependent RNA helicase [Phytophthora megakarya... [more]
gi|635360398|emb|CCI50269.1|1.608e-4771.03unnamed protein product [Albugo candida][more]
gi|697892552|ref|XP_009691516.1|1.626e-4770.09DEAD-box family helicase [Theileria orientalis str... [more]
gi|970657133|gb|KUF95057.1|2.352e-4771.03F-actin-capping protein subunit alpha-2 [Phytophth... [more]
gi|635360399|emb|CCI50270.1|5.910e-4771.03unnamed protein product [Albugo candida][more]
gi|568051735|gb|ETM48634.1|6.005e-4771.03ATP-dependent RNA helicase uap56 [Phytophthora par... [more]
gi|675189419|ref|XP_008903594.1|6.470e-4771.03ATP-dependent RNA helicase uap56 [Phytophthora par... [more]
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Relationships

This CDS is a part of the following mRNA feature(s):

Feature NameUnique NameSpeciesType
rna1187rna1187Nannochloropsis gaditana (N. gaditana B-31)mRNA


Sequences
Synonyms
Publications