rna1182, rna1182 (mRNA) Nannochloropsis gaditana

Overview
Namerna1182
Unique Namerna1182
TypemRNA
OrganismNannochloropsis gaditana (N. gaditana B-31)
Sequence length261
Alignment locationCM002456.1:1417423..1418176 -

Link to JBrowse

Properties
Property NameValue
Producthistone acetyltransferase hac12
Orig transcript idgnl|cribi|Naga_102490g1.8438.mrna
Orig protein idgnl|cribi|Naga_102490g1.8438
GbkeymRNA
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
CM002456.1supercontigCM002456.1:1417423..1418176 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
Naga_102490g1gene1138Nannochloropsis gaditana (N. gaditana B-31)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
rna1182rna1182-proteinNannochloropsis gaditana (N. gaditana B-31)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
EWM29492.1cds1181Nannochloropsis gaditana (N. gaditana B-31)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>rna1182 ID=rna1182|Name=rna1182|organism=Nannochloropsis gaditana|type=mRNA|length=261bp
ATGAGCGCGATGGTTAGGAGTTCGTACATCGGTCGGGACGGTGGAAACAG
GGATGGGACTGGGATCGTTTCCCCATGCAAGGCCTCTCAGGGGGCCTCTG
AGATACGCGAAACAAGTTCAGTTCAAGACTTTTGTACGGGCGTAGAGCAA
CGAGGACACGAAGAGAATTTGCGGAGGAGCGTGCTAGGAACACATAGCGT
GAAAGAAAAAGCAGAAGTCGAAAGACTGCCAGAATGTAGGAGACTGGAGA
ACGCTGGGTAG
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protein sequence of rna1182

>rna1182-protein ID=rna1182-protein|Name=rna1182|organism=Nannochloropsis gaditana|type=polypeptide|length=104bp
MQDFSMCYDCYKAGLWRQHPHTLSRVPIRGKAASEAGGDSDMLRHKEMLR
RHLELLVHSCTCTKHDCVPNCIKMRDLLKHVHECPIRTQGGCKKLPRTKM
RPNP
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mRNA from alignment at CM002456.1:1417423..1418176-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>rna1182 ID=rna1182|Name=rna1182|organism=Nannochloropsis gaditana|type=mRNA|length=754bp|location=Sequence derived from alignment at CM002456.1:1417423..1418176- (Nannochloropsis gaditana)
ATGCAGGACTTCTCCATGTGCTACGACTGCTACAAGGCGGGCCTGTGGCG
CCAGCATCCCCATACCCTCTCCCGCGTGCCCATCCGGGGCAAAGCGGCCT
CGGAGGCGGGGGGCGACAGCGACATGCTGCGGCATAAGGTCAGTCAGGGT
CCACCCTCTTGCGCGCATTCCTCCCGTCTCGAATGTGCCGCAGGATCCAA
CCTCATGTTCGACGTCTCTTTTTCCCTTTTGCCCGCCCGCACTCCATCTC
GCCCTTCCTCCCTCCCTCCCTCCCTCCCTCAGGAAATGCTTCGGCGGCAC
CTGGAGCTCTTGGTCCATTCCTGCACCTGCACCAAACATGACTGTGTTCC
CAACTGCATCAAAATGCGCGATTTGCTCAAGCATGTCCACGAGGTACCTC
CCTCCCTCCCTCCCTCCCTCCCTCCCTCCCTCCCTTCCTCCTTCTCTGCT
CCCTGTTTTTCCCTTCTCCTTCACGCTCTGTCTCTCGCGCCCCAGGTCTT
CTATTCCTCCCGCGGTACCCCTCTCTTTAATGTCTGGAATGCCAGGTCCC
CTCCATGCTCCTCGAAGCGCTCACTGAACCCCCTTCCTCCCCTCCTCCCT
CCCTCCCTCCACCTTCCTTTTGCCTCCCACAGTGCCCCATCCGGACGCAG
GGCGGGTGCAAGAAGTGTCGACGCGTCTGGCTCCTTCTCCAATATCATGC
GAAGAATTGTAAAAATAAAGATTGCCACGTACCAAAATGCGCCCAAATCC
GTGA
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Coding sequence (CDS) from alignment at CM002456.1:1417423..1418176-

>rna1182 ID=rna1182|Name=rna1182|organism=Nannochloropsis gaditana|type=CDS|length=1260bp|location=Sequence derived from alignment at CM002456.1:1417423..1418176- (Nannochloropsis gaditana)
ATTGCCACGTACCAAAATGCGCCCAAATCCGTGATGCCCCATCCGGACGC
AGGGCGGGTGCAAGAAGAAATGCTTCGGCGGCACCTGGAGCTCTTGGTCC
ATTCCTGCACCTGCACCAAACATGACTGTGTTCCCAACTGCATCAAAATG
CGCGATTTGCTCAAGCATGTCCACGAGATGCAGGACTTCTCCATGTGCTA
CGACTGCTACAAGGCGGGCCTGTGGCGCCAGCATCCCCATACCCTCTCCC
GCGTGCCCATCCGGGGCAAAGCGGCCTCGGAGGCGGGGGGCGACAGCGAC
ATGCTGCGGCATAAGATTGCCACGTACCAAAATGCGCCCAAATCCGTGAT
GCCCCATCCGGACGCAGGGCGGGTGCAAGAAGAAATGCTTCGGCGGCACC
TGGAGCTCTTGGTCCATTCCTGCACCTGCACCAAACATGACTGTGTTCCC
AACTGCATCAAAATGCGCGATTTGCTCAAGCATGTCCACGAGATGCAGGA
CTTCTCCATGTGCTACGACTGCTACAAGGCGGGCCTGTGGCGCCAGCATC
CCCATACCCTCTCCCGCGTGCCCATCCGGGGCAAAGCGGCCTCGGAGGCG
GGGGGCGACAGCGACATGCTGCGGCATAAGATTGCCACGTACCAAAATGC
GCCCAAATCCGTGATGCCCCATCCGGACGCAGGGCGGGTGCAAGAAGAAA
TGCTTCGGCGGCACCTGGAGCTCTTGGTCCATTCCTGCACCTGCACCAAA
CATGACTGTGTTCCCAACTGCATCAAAATGCGCGATTTGCTCAAGCATGT
CCACGAGATGCAGGACTTCTCCATGTGCTACGACTGCTACAAGGCGGGCC
TGTGGCGCCAGCATCCCCATACCCTCTCCCGCGTGCCCATCCGGGGCAAA
GCGGCCTCGGAGGCGGGGGGCGACAGCGACATGCTGCGGCATAAGATTGC
CACGTACCAAAATGCGCCCAAATCCGTGATGCCCCATCCGGACGCAGGGC
GGGTGCAAGAAGAAATGCTTCGGCGGCACCTGGAGCTCTTGGTCCATTCC
TGCACCTGCACCAAACATGACTGTGTTCCCAACTGCATCAAAATGCGCGA
TTTGCTCAAGCATGTCCACGAGATGCAGGACTTCTCCATGTGCTACGACT
GCTACAAGGCGGGCCTGTGGCGCCAGCATCCCCATACCCTCTCCCGCGTG
CCCATCCGGGGCAAAGCGGCCTCGGAGGCGGGGGGCGACAGCGACATGCT
GCGGCATAAG
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Synonyms
Publications