EWM29492.1, cds1181 (CDS) Nannochloropsis gaditana
Overview
Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Analyses
This CDS is derived from or has results from the following analyses
Annotated Terms
The following terms have been associated with this CDS:
Homology
BLAST of EWM29492.1 vs. NCBI_GenBank
Match: gi|585112045|gb|EWM29492.1| (histone acetyltransferase hac12 [Nannochloropsis gaditana]) HSP 1 Score: 217.238 bits (552), Expect = 9.620e-72 Identity = 104/104 (100.00%), Postives = 104/104 (100.00%), Query Frame = 0 Query: 1 MQDFSMCYDCYKAGLWRQHPHTLSRVPIRGKAASEAGGDSDMLRHKEMLRRHLELLVHSCTCTKHDCVPNCIKMRDLLKHVHECPIRTQGGCKKLPRTKMRPNP 104 MQDFSMCYDCYKAGLWRQHPHTLSRVPIRGKAASEAGGDSDMLRHKEMLRRHLELLVHSCTCTKHDCVPNCIKMRDLLKHVHECPIRTQGGCKKLPRTKMRPNP Sbjct: 1 MQDFSMCYDCYKAGLWRQHPHTLSRVPIRGKAASEAGGDSDMLRHKEMLRRHLELLVHSCTCTKHDCVPNCIKMRDLLKHVHECPIRTQGGCKKLPRTKMRPNP 104
BLAST of EWM29492.1 vs. NCBI_GenBank
Match: gi|397576398|gb|EJK50235.1| (hypothetical protein THAOC_30821, partial [Thalassiosira oceanica]) HSP 1 Score: 62.7734 bits (151), Expect = 2.869e-9 Identity = 32/91 (35.16%), Postives = 48/91 (52.75%), Query Frame = 0 Query: 3 DFSMCYDCYKAGLWRQHPHTLSRVPIRGKAASEAGGDSDMLRHKEMLRRHLELLVHSCTCTKHDC-VPNCIKMRDLLKHVHECPIRTQGGC 92 DF C +C + +HPH L+ +P+ G A + K ++ H+ LL+H+ TC C NC KM+ LLKH +C ++ QGGC Sbjct: 617 DFDQCIECLRNPAVPKHPHPLTAIPVSG--AQQTLTPEQRKERKRSIQLHMTLLLHASTCRSPKCNSANCAKMKGLLKHGSQCKVKAQGGC 705
BLAST of EWM29492.1 vs. NCBI_GenBank
Match: gi|299472993|emb|CBN77394.1| (Zinc finger, TAZ-type [Ectocarpus siliculosus]) HSP 1 Score: 62.003 bits (149), Expect = 4.952e-9 Identity = 37/93 (39.78%), Postives = 52/93 (55.91%), Query Frame = 0 Query: 3 DFSMCYDCYKAGLWRQHPHTLSRVPIRGKAASEAGGDSDMLRHKEM--LRRHLELLVHSCTCTKHDC-VPNCIKMRDLLKHVHECPIRTQGGC 92 DF +C +CYKA HPH L +P+R AA + S R + ++ H++LL H+ TC +C NC +M++LL H C IR QGGC Sbjct: 1206 DFDLCKECYKA---VPHPHPLKPIPVR-PAAQQQKHLSPAQREERQRHIKLHMQLLQHASTCEDRNCQSKNCSRMKNLLTHGASCTIRAQGGC 1294
BLAST of EWM29492.1 vs. NCBI_GenBank
Match: gi|1191673753|gb|OTG25718.1| (putative zinc finger, TAZ-type [Helianthus annuus]) HSP 1 Score: 60.8474 bits (146), Expect = 1.317e-8 Identity = 34/93 (36.56%), Postives = 49/93 (52.69%), Query Frame = 0 Query: 3 DFSMCYDCYKAGLWRQHPHTLSRVPIRGKAASEAGGDSDMLRHKEML--RRHLELLVHSCTCTKHDC-VPNCIKMRDLLKHVHECPIRTQGGC 92 D+ +C CY G R HPH L+ P + +E + R + +L R+ L+LLVH+ C C PNC K++ L +H +C IR GGC Sbjct: 1421 DYDICNSCYLKGRGRDHPHKLTHHP----SIAERDAQNTEARQQRVLQLRKMLDLLVHASQCKSGQCQYPNCRKVKGLFRHGMQCKIRASGGC 1509
BLAST of EWM29492.1 vs. NCBI_GenBank
Match: gi|219118433|ref|XP_002179989.1| (predicted protein [Phaeodactylum tricornutum CCAP 1055/1] >gi|217408246|gb|EEC48180.1| predicted protein [Phaeodactylum tricornutum CCAP 1055/1]) HSP 1 Score: 59.3066 bits (142), Expect = 4.903e-8 Identity = 31/91 (34.07%), Postives = 46/91 (50.55%), Query Frame = 0 Query: 3 DFSMCYDCYKAGLWRQHPHTLSRVPIRGKAASEAGGDSDMLRHKEMLRRHLELLVHSCTCTKHDC-VPNCIKMRDLLKHVHECPIRTQGGC 92 DF C DC +HPH L +P+ +E R + ++ H+ LL+H+ TC+ C NC KM+ LLKH +C ++ GGC Sbjct: 1454 DFDQCQDCISNPKVPRHPHQLKPIPVANAQQNELTEAQRKERQRS-IQLHMTLLLHAATCSSPKCPSANCTKMKGLLKHGAQCQVKATGGC 1543
BLAST of EWM29492.1 vs. NCBI_GenBank
Match: gi|1173122722|ref|XP_020526042.1| (histone acetyltransferase HAC1 isoform X2 [Amborella trichopoda]) HSP 1 Score: 58.9214 bits (141), Expect = 6.021e-8 Identity = 33/91 (36.26%), Postives = 45/91 (49.45%), Query Frame = 0 Query: 3 DFSMCYDCYKAGLWRQHPHTLSRVPIRGKAASEAGGDSDMLRHKEMLRRHLELLVHSCTCTKHDC-VPNCIKMRDLLKHVHECPIRTQGGC 92 D+ +C CY+ G HPH L+ P A +A LRR L+LLVH+ C C PNC K++ L +H +C +R GGC Sbjct: 1504 DYDICNACYEKGGGANHPHKLTAHP--SSADRDAQNKEARQERVLQLRRMLDLLVHAAQCRSPQCQYPNCRKVKGLFRHGIQCKVRASGGC 1592
BLAST of EWM29492.1 vs. NCBI_GenBank
Match: gi|769806089|ref|XP_011625379.1| (histone acetyltransferase HAC1 isoform X1 [Amborella trichopoda] >gi|1173122720|ref|XP_020526041.1| histone acetyltransferase HAC1 isoform X1 [Amborella trichopoda]) HSP 1 Score: 58.9214 bits (141), Expect = 6.083e-8 Identity = 33/91 (36.26%), Postives = 45/91 (49.45%), Query Frame = 0 Query: 3 DFSMCYDCYKAGLWRQHPHTLSRVPIRGKAASEAGGDSDMLRHKEMLRRHLELLVHSCTCTKHDC-VPNCIKMRDLLKHVHECPIRTQGGC 92 D+ +C CY+ G HPH L+ P A +A LRR L+LLVH+ C C PNC K++ L +H +C +R GGC Sbjct: 1529 DYDICNACYEKGGGANHPHKLTAHP--SSADRDAQNKEARQERVLQLRRMLDLLVHAAQCRSPQCQYPNCRKVKGLFRHGIQCKVRASGGC 1617
BLAST of EWM29492.1 vs. NCBI_GenBank
Match: gi|672123678|ref|XP_008785209.1| (PREDICTED: histone acetyltransferase HAC1-like isoform X1 [Phoenix dactylifera]) HSP 1 Score: 58.5362 bits (140), Expect = 7.678e-8 Identity = 33/91 (36.26%), Postives = 46/91 (50.55%), Query Frame = 0 Query: 3 DFSMCYDCYKAGLWRQHPHTLSRVPIRGKAASEAGGDSDMLRHKEMLRRHLELLVHSCTCTKHDCVPNCIKMRDLLKHVHECPIRTQGGCK 93 DF +C CY+ HPH L+ P A +A + + LR+ L+LLVH+ C H PNC K++ L +H C IR GGC+ Sbjct: 1495 DFDVCNACYQKDGGVDHPHKLTNHPC--IADRDAQNQEARQKRVQQLRKMLDLLVHASQCLSHCPYPNCRKVKSLFRHGMLCKIRASGGCQ 1583
BLAST of EWM29492.1 vs. NCBI_GenBank
Match: gi|1052174998|ref|XP_017697494.1| (PREDICTED: histone acetyltransferase HAC1-like isoform X3 [Phoenix dactylifera]) HSP 1 Score: 58.5362 bits (140), Expect = 7.822e-8 Identity = 33/91 (36.26%), Postives = 46/91 (50.55%), Query Frame = 0 Query: 3 DFSMCYDCYKAGLWRQHPHTLSRVPIRGKAASEAGGDSDMLRHKEMLRRHLELLVHSCTCTKHDCVPNCIKMRDLLKHVHECPIRTQGGCK 93 DF +C CY+ HPH L+ P A +A + + LR+ L+LLVH+ C H PNC K++ L +H C IR GGC+ Sbjct: 1450 DFDVCNACYQKDGGVDHPHKLTNHPC--IADRDAQNQEARQKRVQQLRKMLDLLVHASQCLSHCPYPNCRKVKSLFRHGMLCKIRASGGCQ 1538
BLAST of EWM29492.1 vs. NCBI_GenBank
Match: gi|672123680|ref|XP_008785210.1| (PREDICTED: histone acetyltransferase HAC1-like isoform X2 [Phoenix dactylifera]) HSP 1 Score: 58.5362 bits (140), Expect = 8.217e-8 Identity = 33/91 (36.26%), Postives = 46/91 (50.55%), Query Frame = 0 Query: 3 DFSMCYDCYKAGLWRQHPHTLSRVPIRGKAASEAGGDSDMLRHKEMLRRHLELLVHSCTCTKHDCVPNCIKMRDLLKHVHECPIRTQGGCK 93 DF +C CY+ HPH L+ P A +A + + LR+ L+LLVH+ C H PNC K++ L +H C IR GGC+ Sbjct: 1484 DFDVCNACYQKDGGVDHPHKLTNHPC--IADRDAQNQEARQKRVQQLRKMLDLLVHASQCLSHCPYPNCRKVKSLFRHGMLCKIRASGGCQ 1572 The following BLAST results are available for this feature:
BLAST of EWM29492.1 vs. NCBI_GenBank
Analysis Date: 2020-04-07 (BLAST analysis for N. gaditana B-31) Total hits: 10
Relationships
This CDS is a part of the following mRNA feature(s):
Sequences
Synonyms
Publications
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