EWM29492.1, cds1181 (CDS) Nannochloropsis gaditana

Overview
NameEWM29492.1
Unique Namecds1181
TypeCDS
OrganismNannochloropsis gaditana (N. gaditana B-31)
Alignment locationCM002456.1:1418039..1418176 -
Alignment locationCM002456.1:1417784..1417894 -
Alignment locationCM002456.1:1417513..1417544 -
Alignment locationCM002456.1:1417423..1417456 -

Link to JBrowse

Properties
Property NameValue
Protein idEWM29492.1
Producthistone acetyltransferase hac12
Orig transcript idgnl|cribi|Naga_102490g1.8438.mrna
GbkeyCDS
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
CM002456.1supercontigCM002456.1:1418039..1418176 -
CM002456.1supercontigCM002456.1:1417784..1417894 -
CM002456.1supercontigCM002456.1:1417513..1417544 -
CM002456.1supercontigCM002456.1:1417423..1417456 -
Analyses
This CDS is derived from or has results from the following analyses
Analysis NameDate Performed
GO annotation for N. gaditana B312020-04-08
BLAST analysis for N. gaditana B-312020-04-07
InterPro analysis for N. gaditana B-312020-04-06
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
The following terms have been associated with this CDS:
Vocabulary: Biological Process
TermDefinition
GO:0006139nucleobase-containing compound metabolic process
GO:0009058biosynthetic process
GO:0006464cellular protein modification process
GO:0016043cellular component organization
GO:0006355regulation of transcription, DNA-templated
Vocabulary: Molecular Function
TermDefinition
GO:0140110transcription regulator activity
GO:0005488binding
GO:0016740transferase activity
GO:0008270zinc ion binding
GO:0003712transcription coregulator activity
GO:0004402histone acetyltransferase activity
Vocabulary: Cellular Component
TermDefinition
GO:0005634nucleus
Vocabulary: INTERPRO
TermDefinition
IPR000197Znf_TAZ
Homology
BLAST of EWM29492.1 vs. NCBI_GenBank
Match: gi|585112045|gb|EWM29492.1| (histone acetyltransferase hac12 [Nannochloropsis gaditana])

HSP 1 Score: 217.238 bits (552), Expect = 9.620e-72
Identity = 104/104 (100.00%), Postives = 104/104 (100.00%), Query Frame = 0
Query:    1 MQDFSMCYDCYKAGLWRQHPHTLSRVPIRGKAASEAGGDSDMLRHKEMLRRHLELLVHSCTCTKHDCVPNCIKMRDLLKHVHECPIRTQGGCKKLPRTKMRPNP 104
            MQDFSMCYDCYKAGLWRQHPHTLSRVPIRGKAASEAGGDSDMLRHKEMLRRHLELLVHSCTCTKHDCVPNCIKMRDLLKHVHECPIRTQGGCKKLPRTKMRPNP
Sbjct:    1 MQDFSMCYDCYKAGLWRQHPHTLSRVPIRGKAASEAGGDSDMLRHKEMLRRHLELLVHSCTCTKHDCVPNCIKMRDLLKHVHECPIRTQGGCKKLPRTKMRPNP 104          
BLAST of EWM29492.1 vs. NCBI_GenBank
Match: gi|397576398|gb|EJK50235.1| (hypothetical protein THAOC_30821, partial [Thalassiosira oceanica])

HSP 1 Score: 62.7734 bits (151), Expect = 2.869e-9
Identity = 32/91 (35.16%), Postives = 48/91 (52.75%), Query Frame = 0
Query:    3 DFSMCYDCYKAGLWRQHPHTLSRVPIRGKAASEAGGDSDMLRHKEMLRRHLELLVHSCTCTKHDC-VPNCIKMRDLLKHVHECPIRTQGGC 92
            DF  C +C +     +HPH L+ +P+ G  A +          K  ++ H+ LL+H+ TC    C   NC KM+ LLKH  +C ++ QGGC
Sbjct:  617 DFDQCIECLRNPAVPKHPHPLTAIPVSG--AQQTLTPEQRKERKRSIQLHMTLLLHASTCRSPKCNSANCAKMKGLLKHGSQCKVKAQGGC 705          
BLAST of EWM29492.1 vs. NCBI_GenBank
Match: gi|299472993|emb|CBN77394.1| (Zinc finger, TAZ-type [Ectocarpus siliculosus])

HSP 1 Score: 62.003 bits (149), Expect = 4.952e-9
Identity = 37/93 (39.78%), Postives = 52/93 (55.91%), Query Frame = 0
Query:    3 DFSMCYDCYKAGLWRQHPHTLSRVPIRGKAASEAGGDSDMLRHKEM--LRRHLELLVHSCTCTKHDC-VPNCIKMRDLLKHVHECPIRTQGGC 92
            DF +C +CYKA     HPH L  +P+R  AA +    S   R +    ++ H++LL H+ TC   +C   NC +M++LL H   C IR QGGC
Sbjct: 1206 DFDLCKECYKA---VPHPHPLKPIPVR-PAAQQQKHLSPAQREERQRHIKLHMQLLQHASTCEDRNCQSKNCSRMKNLLTHGASCTIRAQGGC 1294          
BLAST of EWM29492.1 vs. NCBI_GenBank
Match: gi|1191673753|gb|OTG25718.1| (putative zinc finger, TAZ-type [Helianthus annuus])

HSP 1 Score: 60.8474 bits (146), Expect = 1.317e-8
Identity = 34/93 (36.56%), Postives = 49/93 (52.69%), Query Frame = 0
Query:    3 DFSMCYDCYKAGLWRQHPHTLSRVPIRGKAASEAGGDSDMLRHKEML--RRHLELLVHSCTCTKHDC-VPNCIKMRDLLKHVHECPIRTQGGC 92
            D+ +C  CY  G  R HPH L+  P    + +E    +   R + +L  R+ L+LLVH+  C    C  PNC K++ L +H  +C IR  GGC
Sbjct: 1421 DYDICNSCYLKGRGRDHPHKLTHHP----SIAERDAQNTEARQQRVLQLRKMLDLLVHASQCKSGQCQYPNCRKVKGLFRHGMQCKIRASGGC 1509          
BLAST of EWM29492.1 vs. NCBI_GenBank
Match: gi|219118433|ref|XP_002179989.1| (predicted protein [Phaeodactylum tricornutum CCAP 1055/1] >gi|217408246|gb|EEC48180.1| predicted protein [Phaeodactylum tricornutum CCAP 1055/1])

HSP 1 Score: 59.3066 bits (142), Expect = 4.903e-8
Identity = 31/91 (34.07%), Postives = 46/91 (50.55%), Query Frame = 0
Query:    3 DFSMCYDCYKAGLWRQHPHTLSRVPIRGKAASEAGGDSDMLRHKEMLRRHLELLVHSCTCTKHDC-VPNCIKMRDLLKHVHECPIRTQGGC 92
            DF  C DC       +HPH L  +P+     +E        R +  ++ H+ LL+H+ TC+   C   NC KM+ LLKH  +C ++  GGC
Sbjct: 1454 DFDQCQDCISNPKVPRHPHQLKPIPVANAQQNELTEAQRKERQRS-IQLHMTLLLHAATCSSPKCPSANCTKMKGLLKHGAQCQVKATGGC 1543          
BLAST of EWM29492.1 vs. NCBI_GenBank
Match: gi|1173122722|ref|XP_020526042.1| (histone acetyltransferase HAC1 isoform X2 [Amborella trichopoda])

HSP 1 Score: 58.9214 bits (141), Expect = 6.021e-8
Identity = 33/91 (36.26%), Postives = 45/91 (49.45%), Query Frame = 0
Query:    3 DFSMCYDCYKAGLWRQHPHTLSRVPIRGKAASEAGGDSDMLRHKEMLRRHLELLVHSCTCTKHDC-VPNCIKMRDLLKHVHECPIRTQGGC 92
            D+ +C  CY+ G    HPH L+  P    A  +A            LRR L+LLVH+  C    C  PNC K++ L +H  +C +R  GGC
Sbjct: 1504 DYDICNACYEKGGGANHPHKLTAHP--SSADRDAQNKEARQERVLQLRRMLDLLVHAAQCRSPQCQYPNCRKVKGLFRHGIQCKVRASGGC 1592          
BLAST of EWM29492.1 vs. NCBI_GenBank
Match: gi|769806089|ref|XP_011625379.1| (histone acetyltransferase HAC1 isoform X1 [Amborella trichopoda] >gi|1173122720|ref|XP_020526041.1| histone acetyltransferase HAC1 isoform X1 [Amborella trichopoda])

HSP 1 Score: 58.9214 bits (141), Expect = 6.083e-8
Identity = 33/91 (36.26%), Postives = 45/91 (49.45%), Query Frame = 0
Query:    3 DFSMCYDCYKAGLWRQHPHTLSRVPIRGKAASEAGGDSDMLRHKEMLRRHLELLVHSCTCTKHDC-VPNCIKMRDLLKHVHECPIRTQGGC 92
            D+ +C  CY+ G    HPH L+  P    A  +A            LRR L+LLVH+  C    C  PNC K++ L +H  +C +R  GGC
Sbjct: 1529 DYDICNACYEKGGGANHPHKLTAHP--SSADRDAQNKEARQERVLQLRRMLDLLVHAAQCRSPQCQYPNCRKVKGLFRHGIQCKVRASGGC 1617          
BLAST of EWM29492.1 vs. NCBI_GenBank
Match: gi|672123678|ref|XP_008785209.1| (PREDICTED: histone acetyltransferase HAC1-like isoform X1 [Phoenix dactylifera])

HSP 1 Score: 58.5362 bits (140), Expect = 7.678e-8
Identity = 33/91 (36.26%), Postives = 46/91 (50.55%), Query Frame = 0
Query:    3 DFSMCYDCYKAGLWRQHPHTLSRVPIRGKAASEAGGDSDMLRHKEMLRRHLELLVHSCTCTKHDCVPNCIKMRDLLKHVHECPIRTQGGCK 93
            DF +C  CY+      HPH L+  P    A  +A       +  + LR+ L+LLVH+  C  H   PNC K++ L +H   C IR  GGC+
Sbjct: 1495 DFDVCNACYQKDGGVDHPHKLTNHPC--IADRDAQNQEARQKRVQQLRKMLDLLVHASQCLSHCPYPNCRKVKSLFRHGMLCKIRASGGCQ 1583          
BLAST of EWM29492.1 vs. NCBI_GenBank
Match: gi|1052174998|ref|XP_017697494.1| (PREDICTED: histone acetyltransferase HAC1-like isoform X3 [Phoenix dactylifera])

HSP 1 Score: 58.5362 bits (140), Expect = 7.822e-8
Identity = 33/91 (36.26%), Postives = 46/91 (50.55%), Query Frame = 0
Query:    3 DFSMCYDCYKAGLWRQHPHTLSRVPIRGKAASEAGGDSDMLRHKEMLRRHLELLVHSCTCTKHDCVPNCIKMRDLLKHVHECPIRTQGGCK 93
            DF +C  CY+      HPH L+  P    A  +A       +  + LR+ L+LLVH+  C  H   PNC K++ L +H   C IR  GGC+
Sbjct: 1450 DFDVCNACYQKDGGVDHPHKLTNHPC--IADRDAQNQEARQKRVQQLRKMLDLLVHASQCLSHCPYPNCRKVKSLFRHGMLCKIRASGGCQ 1538          
BLAST of EWM29492.1 vs. NCBI_GenBank
Match: gi|672123680|ref|XP_008785210.1| (PREDICTED: histone acetyltransferase HAC1-like isoform X2 [Phoenix dactylifera])

HSP 1 Score: 58.5362 bits (140), Expect = 8.217e-8
Identity = 33/91 (36.26%), Postives = 46/91 (50.55%), Query Frame = 0
Query:    3 DFSMCYDCYKAGLWRQHPHTLSRVPIRGKAASEAGGDSDMLRHKEMLRRHLELLVHSCTCTKHDCVPNCIKMRDLLKHVHECPIRTQGGCK 93
            DF +C  CY+      HPH L+  P    A  +A       +  + LR+ L+LLVH+  C  H   PNC K++ L +H   C IR  GGC+
Sbjct: 1484 DFDVCNACYQKDGGVDHPHKLTNHPC--IADRDAQNQEARQKRVQQLRKMLDLLVHASQCLSHCPYPNCRKVKSLFRHGMLCKIRASGGCQ 1572          
The following BLAST results are available for this feature:
BLAST of EWM29492.1 vs. NCBI_GenBank
Analysis Date: 2020-04-07 (BLAST analysis for N. gaditana B-31)
Total hits: 10
Match NameE-valueIdentityDescription
gi|585112045|gb|EWM29492.1|9.620e-72100.00histone acetyltransferase hac12 [Nannochloropsis g... [more]
gi|397576398|gb|EJK50235.1|2.869e-935.16hypothetical protein THAOC_30821, partial [Thalass... [more]
gi|299472993|emb|CBN77394.1|4.952e-939.78Zinc finger, TAZ-type [Ectocarpus siliculosus][more]
gi|1191673753|gb|OTG25718.1|1.317e-836.56putative zinc finger, TAZ-type [Helianthus annuus][more]
gi|219118433|ref|XP_002179989.1|4.903e-834.07predicted protein [Phaeodactylum tricornutum CCAP ... [more]
gi|1173122722|ref|XP_020526042.1|6.021e-836.26histone acetyltransferase HAC1 isoform X2 [Amborel... [more]
gi|769806089|ref|XP_011625379.1|6.083e-836.26histone acetyltransferase HAC1 isoform X1 [Amborel... [more]
gi|672123678|ref|XP_008785209.1|7.678e-836.26PREDICTED: histone acetyltransferase HAC1-like iso... [more]
gi|1052174998|ref|XP_017697494.1|7.822e-836.26PREDICTED: histone acetyltransferase HAC1-like iso... [more]
gi|672123680|ref|XP_008785210.1|8.217e-836.26PREDICTED: histone acetyltransferase HAC1-like iso... [more]
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Relationships

This CDS is a part of the following mRNA feature(s):

Feature NameUnique NameSpeciesType
rna1182rna1182Nannochloropsis gaditana (N. gaditana B-31)mRNA


Sequences
Synonyms
Publications