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Properties
| Property Name | Value |
|---|
| Product | Zinc finger, HIT-type |
| Orig transcript id | gnl|cribi|Naga_100033g44.8407.mrna |
| Orig protein id | gnl|cribi|Naga_100033g44.8407 |
| Gbkey | mRNA |
Alignments
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| CM002455.1 | supercontig | CM002455.1:314369..314938 - |
Analyses
This mRNA is derived from or has results from the following analyses
Relationships
This mRNA is a part of the following gene feature(s):
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
mRNA sequence >rna118 ID=rna118|Name=rna118|organism=Nannochloropsis gaditana|type=mRNA|length=2780bp
CGTGGCGTGGATGGGGATGCTTTCGTCTTCTTCCCAGGACTTTCGGTGAT
TGGAGGAGAGGGAAGAGCATGTTCACGCCGGAGATGCTGTTTCCTGTGAC
GTAGGAAGACAACTAGACTCGAGGCGGCCGTGAACAGGGAAAGCTGCAGG
AAAGTAAAACCTGCGCCGAGTCCAGAGGCATCATTGTTATCATCACTCCT
CATGTCTTCTTCGGGCCATGTGCTGTCATTCTTGCGGGTGCTTTCCCTTT
CTGTGCGACAGTTTTTTGGAAGGGGGGTACAAAAGGGTGAGGAGATGCGC
CTCGTCTAGAGCTGATGAATCACGGTTCGTTTGAGCAAGTGACGTTTTGA
AGAGAGGCTGCAAAGCGAATGGATGTCATCGTATGCATACATCACGGCTA
TCTTGCGCGGTACGTGGGTGCTGAGAGGCGCTGGGCTGCGATTTGTGTAC
GTGGTAATGCCGGTATAACCCGAACCAGCTGAACCAAACCAACATCAAGC
AAATTTGATGAGTAGACCGGGAGGTGAAGTAAAGTTCGTGATAAGATAGG
AGGGCGCAACTGCCCTTTGGCTTAGAGCCCACTTTTTCGTTTGTGTGTGT
GACCAGGAAGCGGGTCGTCAGTGACAATTTTGACACTTTGCAGGTCTGTT
GCGGCCTCGGGATGATAGCTGATGGCAAGCGAAGAGACATCATTGCTCTC
CCGTTGCATTCTTTAAACATAACCCCACCCACGACATGTTCTTATCCCAC
CGCTAACGCCCCAGGGAAGGCAATGGAAGGTGCAGAAGATCCAACATTGG
GCGACATAGTCGCGTCCGTCATGTTGTTTGACAGACAGACATCCGTGAAG
CACAATTCGCGGGGAAATGCACGGCTTGCTGAAGCCGCCTCGGAGAATGA
TTTTCAAAAGGGAGCTCAAAAAGCGGTGGAAGCGATCGCAGCTCCAAAAC
TTCCCAAGGCAAAAAAAGGGGCGAGCGTTAAAATATCCTGTGATGGTTCG
GCTGTAGATAAAGACCGTGGGGTGGATGGGGGGGACGGTGGGGAAGGGTC
CGTGCGGCCAACCAAGTCAAAGCTAGCTTGTAAGATATCACCAGAGGAAG
CCCCAAACCTGAAGAATGCGACAACATTACGGCGGATTGAAGCCTTCCCA
ACAATGAAGGAGCCTCTGGTCTCCAGTGTGGATCACGGAACCGCTCTTGT
GGCCGCTGTCAGCCGCCACAGGACTCCACTGGGCACGGCGGTGCCCCCAG
ATGATGACTCGAACGAGAAGAGGGCATCCACATGCCTGTGCGGGGCCCAC
GCCACCGTCACGGTCGAGGCCCGAACGTGGACGGGAATCAATAAACAAGG
TGGCGTGGGCCGTCTGACGAAGGATAACGGGGACGGGACTTTCAACGTCA
AGTACTTGTTGGGAGGCAGTGAGAGAAGGGTGGATCGGTGTTACATCCAA
TGCAACGCCGTTGCAGGCGCGGATCCCGGAGAGGCCGGAAAACGCGCAGT
CAAAGGGCCCGAATTCTTTGTTCCTCAGGCAGATATCCCTGTGTCATCAG
GGGCGGAGGCTGCGCGCGGTTCGGCCCGGCGGCCCCGAAATCCGAGGGCA
GAGCCCGAAGAGCAGACGGAGCAGGGTGAGAAACAGGCGGAGAAGCAGGA
GAAGGAAAGGAGGGGAAAGGAGGACGCTCGGGGGGAGGACTGGACGACGA
GTGGTACGAAGCCCGCGAAGGGCAGGGGCAGGGCCGATGGGACGGGGCCC
TCTGGCCAGAAGCGCTCTCTCGTGCAAGCCAACCAACCCCAGGCGACGTC
CCACCCGGCCACCAAGGCACGGGGTCCAATGCACAAGTCTGAGTCCAGGA
AGATGGCGCCTCCGCCGCCCCAAGGGGGTGGATCGGGGACATGTATGACG
AGCAAGGGAGACCCATCGGCTGTGGCGGAGAGGGCCGCGTCTTCCTCCCC
ACCAAGAGACGCGAGCGTCCAAGCTGACGCTCCGATCCACCCACAAGCAC
GACAAGAAAGAGGGGTCCAAGACGTAGGGGAGGCGGTGCCCTCGGAGCAC
GCCGCCGTGCCACCACCCGCAGCGGATACCCGGTTCCTGGATTTCAAGAG
AAAGCTTTCCCAGGCGGTGATTGAAAATGTAGGCGGCTTGGATCAGATTT
CGTTAGAGCAGTTGAAGGGGGCGGTGGTGGGGGAGGGTCAGGGGTGCTTC
TCCGGCGAGGAGATGGATACGTTTTTGCAGCGCTTGGAAGCAGACAACCA
CTTGATGCTTGTGGACCAAACGGTTTACATCGTCTAGGAAGGCCTGGGAA
AAGGACCTTCTTAGTTCGGGGGAGGAGAGACTCAGGATCGTGGTGCCACT
AAGGGATGGATACCAAGGGGAAGTGACAGCGGGGCGGCAAGACTTGCGTG
CCTCAAGTGTGTGATACGGTGTGGATATGGGGACGAGGAGAAAGGACAGT
GCGGGGTGACAAATGACCAGCAATTCACGGCAGTGAAAATGCAGCCATTC
GTAGATAAATTGAAAGATTGACTACAAGCTTCAAGAAACGTTCCATGAAC
TACATCGAAGAGAATGTTGGTGCGCTATGTTACATTGCCCCGTCTCCTTC
GTCCCATCTCACGTGAGTACCAGATGACCCTCCTCGTACTTCAATGCACC
TATTTCCAGCAGCACCCGGTCCACGAAGGATTTCAGTTCAGGATACTTGT
TCAACTCCTCGCTCAGTCTCTGCGCCCGGTGCCTATCGCTGTCGATATCC
GTCAAGAGACTACACAAAGTGGAGTCTTCC back to topprotein sequence of rna118 >rna118-protein ID=rna118-protein|Name=rna118|organism=Nannochloropsis gaditana|type=polypeptide|length=189bp
MKNRNDKKAMTAGNGKTAMPGCEVCCVADNQGKYKCPNCLLRYCSVSCYR
EHKNAPCEKKEPASTAAHGRKRARESTRDDFFPVPSSIARKHHSDLAATQ
AVDDQEEEEDDGALLTDDMRKALMGSKWLQGALEDSTLCSLLTDIDSDRH
RAQRLSEELNKYPELKSFVDRVLLEIGALKYEEGHLVLT back to topmRNA from alignment at CM002455.1:314369..314938- Legend: CDSpolypeptide Hold the cursor over a type above to highlight its positions in the sequence below. >rna118 ID=rna118|Name=rna118|organism=Nannochloropsis gaditana|type=mRNA|length=570bp|location=Sequence derived from alignment at CM002455.1:314369..314938- (Nannochloropsis gaditana)
ATGAAGAATCGTAACGACAAGAAGGCCATGACCGCCGGTAATGGCAAGAC
AGCAATGCCTGGCTGCGAGGTATGTTGTGTTGCCGACAATCAGGGAAAAT
ACAAATGTCCAAATTGCCTCCTCCGCTATTGCAGCGTTTCCTGTTATCGA
GAGCACAAGAATGCGCCGTGTGAAAAGAAGGAGCCTGCGTCCACGGCCGC
GCACGGAAGAAAGCGGGCCCGTGAAAGCACGAGGGACGACTTCTTCCCTG
TCCCCTCGTCCATTGCACGGAAGCATCACAGCGATTTGGCCGCAACACAG
GCCGTCGACGACCAGGAAGAGGAAGAGGACGACGGGGCATTGCTAACGGA
TGACATGCGGAAGGCGTTGATGGGCAGTAAGTGGTTGCAGGGTGCTCTGG
AAGACTCCACTTTGTGTAGTCTCTTGACGGATATCGACAGCGATAGGCAC
CGGGCGCAGAGACTGAGCGAGGAGTTGAACAAGTATCCTGAACTGAAATC
CTTCGTGGACCGGGTGCTGCTGGAAATAGGTGCATTGAAGTACGAGGAGG
GTCATCTGGTACTCACGTGA back to topCoding sequence (CDS) from alignment at CM002455.1:314369..314938- >rna118 ID=rna118|Name=rna118|organism=Nannochloropsis gaditana|type=CDS|length=570bp|location=Sequence derived from alignment at CM002455.1:314369..314938- (Nannochloropsis gaditana)
ATGAAGAATCGTAACGACAAGAAGGCCATGACCGCCGGTAATGGCAAGAC
AGCAATGCCTGGCTGCGAGGTATGTTGTGTTGCCGACAATCAGGGAAAAT
ACAAATGTCCAAATTGCCTCCTCCGCTATTGCAGCGTTTCCTGTTATCGA
GAGCACAAGAATGCGCCGTGTGAAAAGAAGGAGCCTGCGTCCACGGCCGC
GCACGGAAGAAAGCGGGCCCGTGAAAGCACGAGGGACGACTTCTTCCCTG
TCCCCTCGTCCATTGCACGGAAGCATCACAGCGATTTGGCCGCAACACAG
GCCGTCGACGACCAGGAAGAGGAAGAGGACGACGGGGCATTGCTAACGGA
TGACATGCGGAAGGCGTTGATGGGCAGTAAGTGGTTGCAGGGTGCTCTGG
AAGACTCCACTTTGTGTAGTCTCTTGACGGATATCGACAGCGATAGGCAC
CGGGCGCAGAGACTGAGCGAGGAGTTGAACAAGTATCCTGAACTGAAATC
CTTCGTGGACCGGGTGCTGCTGGAAATAGGTGCATTGAAGTACGAGGAGG
GTCATCTGGTACTCACGTGA back to top
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