EWM30568.1, cds118 (CDS) Nannochloropsis gaditana
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Overview
Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Analyses
This CDS is derived from or has results from the following analyses
Annotated Terms
The following terms have been associated with this CDS:
Homology
BLAST of EWM30568.1 vs. NCBI_GenBank
Match: gi|585113235|gb|EWM30568.1| (Zinc finger, HIT-type [Nannochloropsis gaditana]) HSP 1 Score: 393.275 bits (1009), Expect = 1.323e-138 Identity = 189/189 (100.00%), Postives = 189/189 (100.00%), Query Frame = 0
Query: 1 MKNRNDKKAMTAGNGKTAMPGCEVCCVADNQGKYKCPNCLLRYCSVSCYREHKNAPCEKKEPASTAAHGRKRARESTRDDFFPVPSSIARKHHSDLAATQAVDDQEEEEDDGALLTDDMRKALMGSKWLQGALEDSTLCSLLTDIDSDRHRAQRLSEELNKYPELKSFVDRVLLEIGALKYEEGHLVLT 189
MKNRNDKKAMTAGNGKTAMPGCEVCCVADNQGKYKCPNCLLRYCSVSCYREHKNAPCEKKEPASTAAHGRKRARESTRDDFFPVPSSIARKHHSDLAATQAVDDQEEEEDDGALLTDDMRKALMGSKWLQGALEDSTLCSLLTDIDSDRHRAQRLSEELNKYPELKSFVDRVLLEIGALKYEEGHLVLT
Sbjct: 1 MKNRNDKKAMTAGNGKTAMPGCEVCCVADNQGKYKCPNCLLRYCSVSCYREHKNAPCEKKEPASTAAHGRKRARESTRDDFFPVPSSIARKHHSDLAATQAVDDQEEEEDDGALLTDDMRKALMGSKWLQGALEDSTLCSLLTDIDSDRHRAQRLSEELNKYPELKSFVDRVLLEIGALKYEEGHLVLT 189
BLAST of EWM30568.1 vs. NCBI_GenBank
Match: gi|553189630|ref|XP_005855043.1| (hit-type zinc finger protein, partial [Nannochloropsis gaditana CCMP526] >gi|422294019|gb|EKU21319.1| hit-type zinc finger protein, partial [Nannochloropsis gaditana CCMP526]) HSP 1 Score: 390.963 bits (1003), Expect = 1.794e-137 Identity = 188/189 (99.47%), Postives = 188/189 (99.47%), Query Frame = 0
Query: 1 MKNRNDKKAMTAGNGKTAMPGCEVCCVADNQGKYKCPNCLLRYCSVSCYREHKNAPCEKKEPASTAAHGRKRARESTRDDFFPVPSSIARKHHSDLAATQAVDDQEEEEDDGALLTDDMRKALMGSKWLQGALEDSTLCSLLTDIDSDRHRAQRLSEELNKYPELKSFVDRVLLEIGALKYEEGHLVLT 189
MKNRNDKKAMTAGNGKTAMPGCEVC VADNQGKYKCPNCLLRYCSVSCYREHKNAPCEKKEPASTAAHGRKRARESTRDDFFPVPSSIARKHHSDLAATQAVDDQEEEEDDGALLTDDMRKALMGSKWLQGALEDSTLCSLLTDIDSDRHRAQRLSEELNKYPELKSFVDRVLLEIGALKYEEGHLVLT
Sbjct: 11 MKNRNDKKAMTAGNGKTAMPGCEVCFVADNQGKYKCPNCLLRYCSVSCYREHKNAPCEKKEPASTAAHGRKRARESTRDDFFPVPSSIARKHHSDLAATQAVDDQEEEEDDGALLTDDMRKALMGSKWLQGALEDSTLCSLLTDIDSDRHRAQRLSEELNKYPELKSFVDRVLLEIGALKYEEGHLVLT 199
BLAST of EWM30568.1 vs. NCBI_GenBank
Match: gi|727525524|ref|XP_010438381.1| (PREDICTED: zinc finger HIT domain-containing protein 3 isoform X2 [Camelina sativa]) HSP 1 Score: 71.633 bits (174), Expect = 1.990e-12 Identity = 50/163 (30.67%), Postives = 81/163 (49.69%), Query Frame = 0
Query: 22 CEVCCVADNQGKYKCPNCLLRYCSVSCYREHKNAPCEKKEPASTAAHGRKRARESTRDDFFPVPSS---IARKHHSDLAATQA----VDDQEEEEDDGALLTDDMRKALMGSKWLQGALEDSTLCSLLTDIDSDRHRAQRLSEELNKYPELKSFVDRVLLEIG 177
CE+C + KYKCP+CLL YCS++C++ HK PC K P+ST + A+E + V + + + H AA+ A V E++ +L +A+ S ++ AL+D L L+ +IDS + Q L E + + + F D++L I
Sbjct: 9 CEIC--KNVVSKYKCPSCLLPYCSLACFKTHKETPCAK--PSSTEENPASPAKEVPVERSVVVEEANDVVEKTQHKASAASPAKEIPVARPLHVEEEKFVLEKAQLEAIASSSEIREALKDEALQKLIYNIDSSSNPLQELDEAM-RVEAFREFTDKILSNIS 166
BLAST of EWM30568.1 vs. NCBI_GenBank
Match: gi|219117003|ref|XP_002179296.1| (predicted protein [Phaeodactylum tricornutum CCAP 1055/1] >gi|217409187|gb|EEC49119.1| predicted protein [Phaeodactylum tricornutum CCAP 1055/1]) HSP 1 Score: 72.7886 bits (177), Expect = 6.391e-12 Identity = 56/182 (30.77%), Postives = 84/182 (46.15%), Query Frame = 0
Query: 20 PGCEVCCVADNQGKYKCPNCLLRYCSVSCYREHKNAPCEKKE------PASTAAHGRKRARESTRDDFFPVPSSIARKHHSDLAATQAVDDQ----EEEEDDGALLTDDMRKALMGSKWLQGALEDSTLCSLLTDI-------DSDRHRAQR--LSEELNKYPELKSFVDRVLLEIGALKYE 182
P C VC D+ KYKCP C YCS+ C R HK+ CE + P S + +D P+P L+AT + Q E++ D+G + M A+ S WL+ L+DS L +L+T I D D H AQ L + + +P + F+D++L+ G L+ +
Sbjct: 90 PSCSVCRQVDH-PKYKCPKCRATYCSILCCRRHKDGLCEATKATIIETPNSKTLATTGVTSKYLTNDNVPMPL---------LSATASSASQRRKDEDDLDEGWKIDSTMTHAMQSSLWLRQELQDSGLRALITRIVNSSNTLDRDLHTAQERALQQAKDDHPMFQRFIDKLLVLSGVLERQ 261
BLAST of EWM30568.1 vs. NCBI_GenBank
Match: gi|1001607057|gb|KXS10877.1| (hypothetical protein M427DRAFT_115459 [Gonapodya prolifera JEL478]) HSP 1 Score: 69.3218 bits (168), Expect = 1.023e-11 Identity = 50/159 (31.45%), Postives = 69/159 (43.40%), Query Frame = 0
Query: 22 CEVCCVADNQGKYKCPNCLLRYCSVSCYREHKNAPCEKKEPASTAAHGRKRARESTRDDFFPVPSSIARKHHSDLAATQAVDDQEEEEDDGALLTDDMRKALMGSKWLQGALEDSTLCSLLTDIDSDRHRAQRLSEELNKYPELKSFVDRVLLEIGALK 180
C VC + KYKCP CL+ YCS++C++ HK C K EP VP A + + +A E+EDD A LTD+ +AL ++ L L +L DIDS + RL PE FV+ L +G +K
Sbjct: 9 CGVCNL--EPPKYKCPTCLINYCSLACFKNHKAIGCTKPEPV--------------------VPPHSADEPKAGIAL--------EDEDDAA-LTDEQLRALGTDPAIRALLSSPDLRQVLNDIDSSKDPEARLERARANVPEFVQFVETCLDTVGKMK 136
BLAST of EWM30568.1 vs. NCBI_GenBank
Match: gi|727525518|ref|XP_010438378.1| (PREDICTED: zinc finger HIT domain-containing protein 3 isoform X1 [Camelina sativa] >gi|727525521|ref|XP_010438380.1| PREDICTED: zinc finger HIT domain-containing protein 3 isoform X1 [Camelina sativa]) HSP 1 Score: 68.9366 bits (167), Expect = 2.277e-11 Identity = 49/165 (29.70%), Postives = 80/165 (48.48%), Query Frame = 0
Query: 22 CEVCCVADNQGKYKCPNCLLRYCSVSCYREHKNAPCEK-----KEPASTAAHGRKRARESTRDDFFPVPSSIARKHHSDLAATQA----VDDQEEEEDDGALLTDDMRKALMGSKWLQGALEDSTLCSLLTDIDSDRHRAQRLSEELNKYPELKSFVDRVLLEIG 177
CE+C + KYKCP+CLL YCS++C++ HK PC K + PA++ A R ++ V + + H AA+ A V E++ +L +A+ S ++ AL+D L L+ +IDS + Q L E + + + F D++L I
Sbjct: 9 CEIC--KNVVSKYKCPSCLLPYCSLACFKTHKETPCAKPSSTEENPAASPAKEVPVERSVVVEEANDV---VEKTQHKASAASPAKEIPVARPLHVEEEKFVLEKAQLEAIASSSEIREALKDEALQKLIYNIDSSSNPLQELDEAM-RVEAFREFTDKILSNIS 167
BLAST of EWM30568.1 vs. NCBI_GenBank
Match: gi|1072912358|ref|XP_018455971.1| (PREDICTED: zinc finger HIT domain-containing protein 3 isoform X2 [Raphanus sativus]) HSP 1 Score: 68.1662 bits (165), Expect = 4.278e-11 Identity = 49/164 (29.88%), Postives = 78/164 (47.56%), Query Frame = 0
Query: 18 AMPGCEVCCVADNQGKYKCPNCLLRYCSVSCYREHKNAPCEKKE-PASTAAHGRKRARESTRDDFFPVPSSIARKHHSDLAATQAVDDQEEE-----EDDGALLTDDMRKALMGSKWLQGALEDSTLCSLLTDIDSDRHRAQRLSEELNKYPELKSFVDRVLLE 175
A P CE+C KYKCP+CL+ YCS+ C+++HK PC K P A K+ T+D + + H A++ A D E++ ++ +A+ S ++ AL+D L L++ IDS + Q L E + +++F RVL E
Sbjct: 5 AAPTCEIC--EKVVSKYKCPSCLVPYCSLGCFKKHKETPCAKPSAPEEKPASPAKQVSVETKD-------VVVKTEHKASASSAAKDIPVARPPITVEEEKYVVEKTQLEAIASSSEIREALKDEALQKLISSIDSSSNPLQELDEAMG----VEAF--RVLTE 153
BLAST of EWM30568.1 vs. NCBI_GenBank
Match: gi|1150735407|ref|XP_020241681.1| (zinc finger HIT domain-containing protein 3-like [Asparagus officinalis]) HSP 1 Score: 67.0106 bits (162), Expect = 6.470e-11 Identity = 43/152 (28.29%), Postives = 68/152 (44.74%), Query Frame = 0
Query: 21 GCEVCCVADNQGKYKCPNCLLRYCSVSCYREHKNAPCEKKEPASTAAHGRKRARESTRDDFFPVPSSIARKHHSDLAATQAVDDQEEEEDDGALLTDDMRKALMGSKWLQGALEDSTLCSLLTDIDSDRHRAQRLSEELNKYPELKSFVDRV 172
CEVC Q KYKCP C + YCS+ C+++HK+ PCEK PVP S HSD + +E +D +L+ + ++++ S ++ L D L ++ +DS R L + + L+ F D+V
Sbjct: 5 NCEVC--KGEQSKYKCPTCFIPYCSMVCFKKHKDIPCEK-----------------------PVPPSEEPPKHSDTLKDITDERLQEIDDPSCVLSKEQLESIVKSSEIRSFLADVNLQKMIQKVDSSRDPENELDKAMGDQTFLQ-FTDKV 130
BLAST of EWM30568.1 vs. NCBI_GenBank
Match: gi|922407717|ref|XP_013617263.1| (PREDICTED: zinc finger HIT domain-containing protein 3 isoform X1 [Brassica oleracea var. oleracea]) HSP 1 Score: 67.0106 bits (162), Expect = 1.291e-10 Identity = 47/162 (29.01%), Postives = 77/162 (47.53%), Query Frame = 0
Query: 18 AMPGCEVCCVADNQGKYKCPNCLLRYCSVSCYREHKNAPCEKKEPASTAAHGRKRARESTRDDFFPVPSSIARKHHSDLAATQA----VDDQEEEEDDGALLTDDMRKALMGSKWLQGALEDSTLCSLLTDIDSDRHRAQRLSEELNKYPELKSFVDRVLLE 175
A P CE+C KYKCP+CL+ YCS+ C+++HK PC K +AA + A + + + H A++ A V E++ ++ +A+ S ++ AL+D L L++ IDS + Q L E + +++F RVL E
Sbjct: 5 AAPTCEIC--EKVVSKYKCPSCLVPYCSLGCFKKHKETPCAK----PSAAEEKPAASPAKEVSVVETKDVVVKTEHKPGASSAAKEVPVARPITVEEEKYVVEKTQLEAIASSSEIKEALKDEALQKLISTIDSSSNPLQELDEAMG----VEAF--RVLTE 154
BLAST of EWM30568.1 vs. NCBI_GenBank
Match: gi|802716909|ref|XP_012085170.1| (zinc finger HIT domain-containing protein 3 [Jatropha curcas]) HSP 1 Score: 66.2402 bits (160), Expect = 1.370e-10 Identity = 46/156 (29.49%), Postives = 69/156 (44.23%), Query Frame = 0
Query: 22 CEVCCVADNQGKYKCPNCLLRYCSVSCYREHKNAPCEKKEPASTAAHGRKRARESTRDDFFPVPSSIARKHHSDLAATQAVDDQEEEEDDGALLTDDMRKALMGSKWLQGALEDSTLCSLLTDIDSDRHRAQRLSEELNKYPELKSFVDRVLLEIG 177
C+VC + Q KYKCP+CL YCS+ C+++HK PC K EP + +ST D P+ + VDD E +L +++ S +Q AL D +L L+ IDS L + + + F D++L I
Sbjct: 6 CQVC--NEAQSKYKCPSCLAPYCSLGCFKKHKEIPCAKPEPKEEKSSTVSAEEKSTADPKLPIRRPL------------IVDDASE------VLLKPQLESIASSSEIQSALRDESLRKLIRSIDSAADPESELEKAMG-VEAFRIFTDKMLSTIN 140 The following BLAST results are available for this feature:
BLAST of EWM30568.1 vs. NCBI_GenBank
Analysis Date: 2020-04-07 (BLAST analysis for N. gaditana B-31) Total hits: 10
Relationships
This CDS is a part of the following mRNA feature(s):
Sequences
Synonyms
Publications
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