EWM30568.1, cds118 (CDS) Nannochloropsis gaditana

Overview
NameEWM30568.1
Unique Namecds118
TypeCDS
OrganismNannochloropsis gaditana (N. gaditana B-31)
Alignment locationCM002455.1:314369..314938 -

Link to JBrowse

Properties
Property NameValue
Protein idEWM30568.1
ProductZinc finger, HIT-type
Orig transcript idgnl|cribi|Naga_100033g44.8407.mrna
GbkeyCDS
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
CM002455.1supercontigCM002455.1:314369..314938 -
Analyses
This CDS is derived from or has results from the following analyses
Analysis NameDate Performed
GO annotation for N. gaditana B312020-04-08
BLAST analysis for N. gaditana B-312020-04-07
InterPro analysis for N. gaditana B-312020-04-06
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
The following terms have been associated with this CDS:
Vocabulary: Molecular Function
TermDefinition
GO:0005488binding
Vocabulary: INTERPRO
TermDefinition
IPR007529Znf_HIT
Homology
BLAST of EWM30568.1 vs. NCBI_GenBank
Match: gi|585113235|gb|EWM30568.1| (Zinc finger, HIT-type [Nannochloropsis gaditana])

HSP 1 Score: 393.275 bits (1009), Expect = 1.323e-138
Identity = 189/189 (100.00%), Postives = 189/189 (100.00%), Query Frame = 0
Query:    1 MKNRNDKKAMTAGNGKTAMPGCEVCCVADNQGKYKCPNCLLRYCSVSCYREHKNAPCEKKEPASTAAHGRKRARESTRDDFFPVPSSIARKHHSDLAATQAVDDQEEEEDDGALLTDDMRKALMGSKWLQGALEDSTLCSLLTDIDSDRHRAQRLSEELNKYPELKSFVDRVLLEIGALKYEEGHLVLT 189
            MKNRNDKKAMTAGNGKTAMPGCEVCCVADNQGKYKCPNCLLRYCSVSCYREHKNAPCEKKEPASTAAHGRKRARESTRDDFFPVPSSIARKHHSDLAATQAVDDQEEEEDDGALLTDDMRKALMGSKWLQGALEDSTLCSLLTDIDSDRHRAQRLSEELNKYPELKSFVDRVLLEIGALKYEEGHLVLT
Sbjct:    1 MKNRNDKKAMTAGNGKTAMPGCEVCCVADNQGKYKCPNCLLRYCSVSCYREHKNAPCEKKEPASTAAHGRKRARESTRDDFFPVPSSIARKHHSDLAATQAVDDQEEEEDDGALLTDDMRKALMGSKWLQGALEDSTLCSLLTDIDSDRHRAQRLSEELNKYPELKSFVDRVLLEIGALKYEEGHLVLT 189          
BLAST of EWM30568.1 vs. NCBI_GenBank
Match: gi|553189630|ref|XP_005855043.1| (hit-type zinc finger protein, partial [Nannochloropsis gaditana CCMP526] >gi|422294019|gb|EKU21319.1| hit-type zinc finger protein, partial [Nannochloropsis gaditana CCMP526])

HSP 1 Score: 390.963 bits (1003), Expect = 1.794e-137
Identity = 188/189 (99.47%), Postives = 188/189 (99.47%), Query Frame = 0
Query:    1 MKNRNDKKAMTAGNGKTAMPGCEVCCVADNQGKYKCPNCLLRYCSVSCYREHKNAPCEKKEPASTAAHGRKRARESTRDDFFPVPSSIARKHHSDLAATQAVDDQEEEEDDGALLTDDMRKALMGSKWLQGALEDSTLCSLLTDIDSDRHRAQRLSEELNKYPELKSFVDRVLLEIGALKYEEGHLVLT 189
            MKNRNDKKAMTAGNGKTAMPGCEVC VADNQGKYKCPNCLLRYCSVSCYREHKNAPCEKKEPASTAAHGRKRARESTRDDFFPVPSSIARKHHSDLAATQAVDDQEEEEDDGALLTDDMRKALMGSKWLQGALEDSTLCSLLTDIDSDRHRAQRLSEELNKYPELKSFVDRVLLEIGALKYEEGHLVLT
Sbjct:   11 MKNRNDKKAMTAGNGKTAMPGCEVCFVADNQGKYKCPNCLLRYCSVSCYREHKNAPCEKKEPASTAAHGRKRARESTRDDFFPVPSSIARKHHSDLAATQAVDDQEEEEDDGALLTDDMRKALMGSKWLQGALEDSTLCSLLTDIDSDRHRAQRLSEELNKYPELKSFVDRVLLEIGALKYEEGHLVLT 199          
BLAST of EWM30568.1 vs. NCBI_GenBank
Match: gi|727525524|ref|XP_010438381.1| (PREDICTED: zinc finger HIT domain-containing protein 3 isoform X2 [Camelina sativa])

HSP 1 Score: 71.633 bits (174), Expect = 1.990e-12
Identity = 50/163 (30.67%), Postives = 81/163 (49.69%), Query Frame = 0
Query:   22 CEVCCVADNQGKYKCPNCLLRYCSVSCYREHKNAPCEKKEPASTAAHGRKRARESTRDDFFPVPSS---IARKHHSDLAATQA----VDDQEEEEDDGALLTDDMRKALMGSKWLQGALEDSTLCSLLTDIDSDRHRAQRLSEELNKYPELKSFVDRVLLEIG 177
            CE+C   +   KYKCP+CLL YCS++C++ HK  PC K  P+ST  +    A+E   +    V  +   + +  H   AA+ A    V      E++  +L     +A+  S  ++ AL+D  L  L+ +IDS  +  Q L E + +    + F D++L  I 
Sbjct:    9 CEIC--KNVVSKYKCPSCLLPYCSLACFKTHKETPCAK--PSSTEENPASPAKEVPVERSVVVEEANDVVEKTQHKASAASPAKEIPVARPLHVEEEKFVLEKAQLEAIASSSEIREALKDEALQKLIYNIDSSSNPLQELDEAM-RVEAFREFTDKILSNIS 166          
BLAST of EWM30568.1 vs. NCBI_GenBank
Match: gi|219117003|ref|XP_002179296.1| (predicted protein [Phaeodactylum tricornutum CCAP 1055/1] >gi|217409187|gb|EEC49119.1| predicted protein [Phaeodactylum tricornutum CCAP 1055/1])

HSP 1 Score: 72.7886 bits (177), Expect = 6.391e-12
Identity = 56/182 (30.77%), Postives = 84/182 (46.15%), Query Frame = 0
Query:   20 PGCEVCCVADNQGKYKCPNCLLRYCSVSCYREHKNAPCEKKE------PASTAAHGRKRARESTRDDFFPVPSSIARKHHSDLAATQAVDDQ----EEEEDDGALLTDDMRKALMGSKWLQGALEDSTLCSLLTDI-------DSDRHRAQR--LSEELNKYPELKSFVDRVLLEIGALKYE 182
            P C VC   D+  KYKCP C   YCS+ C R HK+  CE  +      P S          +   +D  P+P          L+AT +   Q    E++ D+G  +   M  A+  S WL+  L+DS L +L+T I       D D H AQ   L +  + +P  + F+D++L+  G L+ +
Sbjct:   90 PSCSVCRQVDH-PKYKCPKCRATYCSILCCRRHKDGLCEATKATIIETPNSKTLATTGVTSKYLTNDNVPMPL---------LSATASSASQRRKDEDDLDEGWKIDSTMTHAMQSSLWLRQELQDSGLRALITRIVNSSNTLDRDLHTAQERALQQAKDDHPMFQRFIDKLLVLSGVLERQ 261          
BLAST of EWM30568.1 vs. NCBI_GenBank
Match: gi|1001607057|gb|KXS10877.1| (hypothetical protein M427DRAFT_115459 [Gonapodya prolifera JEL478])

HSP 1 Score: 69.3218 bits (168), Expect = 1.023e-11
Identity = 50/159 (31.45%), Postives = 69/159 (43.40%), Query Frame = 0
Query:   22 CEVCCVADNQGKYKCPNCLLRYCSVSCYREHKNAPCEKKEPASTAAHGRKRARESTRDDFFPVPSSIARKHHSDLAATQAVDDQEEEEDDGALLTDDMRKALMGSKWLQGALEDSTLCSLLTDIDSDRHRAQRLSEELNKYPELKSFVDRVLLEIGALK 180
            C VC +     KYKCP CL+ YCS++C++ HK   C K EP                     VP   A +  + +A         E+EDD A LTD+  +AL     ++  L    L  +L DIDS +    RL       PE   FV+  L  +G +K
Sbjct:    9 CGVCNL--EPPKYKCPTCLINYCSLACFKNHKAIGCTKPEPV--------------------VPPHSADEPKAGIAL--------EDEDDAA-LTDEQLRALGTDPAIRALLSSPDLRQVLNDIDSSKDPEARLERARANVPEFVQFVETCLDTVGKMK 136          
BLAST of EWM30568.1 vs. NCBI_GenBank
Match: gi|727525518|ref|XP_010438378.1| (PREDICTED: zinc finger HIT domain-containing protein 3 isoform X1 [Camelina sativa] >gi|727525521|ref|XP_010438380.1| PREDICTED: zinc finger HIT domain-containing protein 3 isoform X1 [Camelina sativa])

HSP 1 Score: 68.9366 bits (167), Expect = 2.277e-11
Identity = 49/165 (29.70%), Postives = 80/165 (48.48%), Query Frame = 0
Query:   22 CEVCCVADNQGKYKCPNCLLRYCSVSCYREHKNAPCEK-----KEPASTAAHGRKRARESTRDDFFPVPSSIARKHHSDLAATQA----VDDQEEEEDDGALLTDDMRKALMGSKWLQGALEDSTLCSLLTDIDSDRHRAQRLSEELNKYPELKSFVDRVLLEIG 177
            CE+C   +   KYKCP+CLL YCS++C++ HK  PC K     + PA++ A      R    ++   V   + +  H   AA+ A    V      E++  +L     +A+  S  ++ AL+D  L  L+ +IDS  +  Q L E + +    + F D++L  I 
Sbjct:    9 CEIC--KNVVSKYKCPSCLLPYCSLACFKTHKETPCAKPSSTEENPAASPAKEVPVERSVVVEEANDV---VEKTQHKASAASPAKEIPVARPLHVEEEKFVLEKAQLEAIASSSEIREALKDEALQKLIYNIDSSSNPLQELDEAM-RVEAFREFTDKILSNIS 167          
BLAST of EWM30568.1 vs. NCBI_GenBank
Match: gi|1072912358|ref|XP_018455971.1| (PREDICTED: zinc finger HIT domain-containing protein 3 isoform X2 [Raphanus sativus])

HSP 1 Score: 68.1662 bits (165), Expect = 4.278e-11
Identity = 49/164 (29.88%), Postives = 78/164 (47.56%), Query Frame = 0
Query:   18 AMPGCEVCCVADNQGKYKCPNCLLRYCSVSCYREHKNAPCEKKE-PASTAAHGRKRARESTRDDFFPVPSSIARKHHSDLAATQAVDDQEEE-----EDDGALLTDDMRKALMGSKWLQGALEDSTLCSLLTDIDSDRHRAQRLSEELNKYPELKSFVDRVLLE 175
            A P CE+C       KYKCP+CL+ YCS+ C+++HK  PC K   P    A   K+    T+D        + +  H   A++ A D          E++  ++     +A+  S  ++ AL+D  L  L++ IDS  +  Q L E +     +++F  RVL E
Sbjct:    5 AAPTCEIC--EKVVSKYKCPSCLVPYCSLGCFKKHKETPCAKPSAPEEKPASPAKQVSVETKD-------VVVKTEHKASASSAAKDIPVARPPITVEEEKYVVEKTQLEAIASSSEIREALKDEALQKLISSIDSSSNPLQELDEAMG----VEAF--RVLTE 153          
BLAST of EWM30568.1 vs. NCBI_GenBank
Match: gi|1150735407|ref|XP_020241681.1| (zinc finger HIT domain-containing protein 3-like [Asparagus officinalis])

HSP 1 Score: 67.0106 bits (162), Expect = 6.470e-11
Identity = 43/152 (28.29%), Postives = 68/152 (44.74%), Query Frame = 0
Query:   21 GCEVCCVADNQGKYKCPNCLLRYCSVSCYREHKNAPCEKKEPASTAAHGRKRARESTRDDFFPVPSSIARKHHSDLAATQAVDDQEEEEDDGALLTDDMRKALMGSKWLQGALEDSTLCSLLTDIDSDRHRAQRLSEELNKYPELKSFVDRV 172
             CEVC     Q KYKCP C + YCS+ C+++HK+ PCEK                       PVP S     HSD       +  +E +D   +L+ +  ++++ S  ++  L D  L  ++  +DS R     L + +     L+ F D+V
Sbjct:    5 NCEVC--KGEQSKYKCPTCFIPYCSMVCFKKHKDIPCEK-----------------------PVPPSEEPPKHSDTLKDITDERLQEIDDPSCVLSKEQLESIVKSSEIRSFLADVNLQKMIQKVDSSRDPENELDKAMGDQTFLQ-FTDKV 130          
BLAST of EWM30568.1 vs. NCBI_GenBank
Match: gi|922407717|ref|XP_013617263.1| (PREDICTED: zinc finger HIT domain-containing protein 3 isoform X1 [Brassica oleracea var. oleracea])

HSP 1 Score: 67.0106 bits (162), Expect = 1.291e-10
Identity = 47/162 (29.01%), Postives = 77/162 (47.53%), Query Frame = 0
Query:   18 AMPGCEVCCVADNQGKYKCPNCLLRYCSVSCYREHKNAPCEKKEPASTAAHGRKRARESTRDDFFPVPSSIARKHHSDLAATQA----VDDQEEEEDDGALLTDDMRKALMGSKWLQGALEDSTLCSLLTDIDSDRHRAQRLSEELNKYPELKSFVDRVLLE 175
            A P CE+C       KYKCP+CL+ YCS+ C+++HK  PC K     +AA  +  A  +           + +  H   A++ A    V      E++  ++     +A+  S  ++ AL+D  L  L++ IDS  +  Q L E +     +++F  RVL E
Sbjct:    5 AAPTCEIC--EKVVSKYKCPSCLVPYCSLGCFKKHKETPCAK----PSAAEEKPAASPAKEVSVVETKDVVVKTEHKPGASSAAKEVPVARPITVEEEKYVVEKTQLEAIASSSEIKEALKDEALQKLISTIDSSSNPLQELDEAMG----VEAF--RVLTE 154          
BLAST of EWM30568.1 vs. NCBI_GenBank
Match: gi|802716909|ref|XP_012085170.1| (zinc finger HIT domain-containing protein 3 [Jatropha curcas])

HSP 1 Score: 66.2402 bits (160), Expect = 1.370e-10
Identity = 46/156 (29.49%), Postives = 69/156 (44.23%), Query Frame = 0
Query:   22 CEVCCVADNQGKYKCPNCLLRYCSVSCYREHKNAPCEKKEPASTAAHGRKRARESTRDDFFPVPSSIARKHHSDLAATQAVDDQEEEEDDGALLTDDMRKALMGSKWLQGALEDSTLCSLLTDIDSDRHRAQRLSEELNKYPELKSFVDRVLLEIG 177
            C+VC   + Q KYKCP+CL  YCS+ C+++HK  PC K EP    +       +ST D   P+   +             VDD  E      +L     +++  S  +Q AL D +L  L+  IDS       L + +      + F D++L  I 
Sbjct:    6 CQVC--NEAQSKYKCPSCLAPYCSLGCFKKHKEIPCAKPEPKEEKSSTVSAEEKSTADPKLPIRRPL------------IVDDASE------VLLKPQLESIASSSEIQSALRDESLRKLIRSIDSAADPESELEKAMG-VEAFRIFTDKMLSTIN 140          
The following BLAST results are available for this feature:
BLAST of EWM30568.1 vs. NCBI_GenBank
Analysis Date: 2020-04-07 (BLAST analysis for N. gaditana B-31)
Total hits: 10
Match NameE-valueIdentityDescription
gi|585113235|gb|EWM30568.1|1.323e-138100.00Zinc finger, HIT-type [Nannochloropsis gaditana][more]
gi|553189630|ref|XP_005855043.1|1.794e-13799.47hit-type zinc finger protein, partial [Nannochloro... [more]
gi|727525524|ref|XP_010438381.1|1.990e-1230.67PREDICTED: zinc finger HIT domain-containing prote... [more]
gi|219117003|ref|XP_002179296.1|6.391e-1230.77predicted protein [Phaeodactylum tricornutum CCAP ... [more]
gi|1001607057|gb|KXS10877.1|1.023e-1131.45hypothetical protein M427DRAFT_115459 [Gonapodya p... [more]
gi|727525518|ref|XP_010438378.1|2.277e-1129.70PREDICTED: zinc finger HIT domain-containing prote... [more]
gi|1072912358|ref|XP_018455971.1|4.278e-1129.88PREDICTED: zinc finger HIT domain-containing prote... [more]
gi|1150735407|ref|XP_020241681.1|6.470e-1128.29zinc finger HIT domain-containing protein 3-like [... [more]
gi|922407717|ref|XP_013617263.1|1.291e-1029.01PREDICTED: zinc finger HIT domain-containing prote... [more]
gi|802716909|ref|XP_012085170.1|1.370e-1029.49zinc finger HIT domain-containing protein 3 [Jatro... [more]
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Relationships

This CDS is a part of the following mRNA feature(s):

Feature NameUnique NameSpeciesType
rna118rna118Nannochloropsis gaditana (N. gaditana B-31)mRNA


Sequences
Synonyms
Publications