rna1175, rna1175 (mRNA) Nannochloropsis gaditana | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	rna1175
Unique Name	rna1175
Type	mRNA
Organism	Nannochloropsis gaditana (N. gaditana B-31)
Sequence length	1444
Alignment location	CM002456.1:1400387..1402380 +

Link to JBrowse

Properties


Property Name	Value
Product	solute carrier family 31 (copper transporters) member 1
Orig transcript id	gnl\|cribi\|Naga_100287g8.6252.mrna
Orig protein id	gnl\|cribi\|Naga_100287g8.6252
Gbkey	mRNA
Note	encoded by transcript variant 1; alternatively spliced

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
CM002456.1	supercontig	CM002456.1:1400387..1402380 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. gaditana B-31	2014-02-18

Annotated Terms

Homology

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
Naga_100287g8	gene1131	Nannochloropsis gaditana (N. gaditana B-31)	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
rna1175	rna1175-protein	Nannochloropsis gaditana (N. gaditana B-31)	polypeptide

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
EWM29496.1	cds1174	Nannochloropsis gaditana (N. gaditana B-31)	CDS

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at CM002456.1:1400387..1402380+
coding sequence from alignment at CM002456.1:1400387..1402380+

mRNA sequence

>rna1175 ID=rna1175|Name=rna1175|organism=Nannochloropsis gaditana|type=mRNA|length=1444bp
GAAGCGATGCAAGCCGGACACAAAATCAGCCACACGGCGTAGAACAAAGT
GGGGGAAGTTTCCTATTTGGGGTAAATAATACGTAGACATGCGTATTTCA
AGCCATATTTTTGTTGCAATGCGTCGCTATTCTCCCGCTTATTACCTCTC
ACATGGGCAGCTTTTTGTACTCGGAAGCATTTGCAGAGGAAAGCACGGTC
ATCAAGGACGCACCGCAAAGATGGATATGGATATGCCCGGCATGGATATG
GACATGCCCGGGATGGACATGGGGGGAATGGGGGATAGCGGGGGCTTTTG
CCAGGGGGAGGGAAGCGTTATGAACAACGGCTTCGTTTTCATGCCGCAGG
TGAGACGCGAACGAAGAAGGATGCATTTACAATTCGTGGAGACGATGTAA
ACGACATAGATAGTGGAAGAGAGGGATGTGAATGGAAAGAAATGCAGGAT
TCGAGGAGTAGCGGCCGAGAGCACAGAATAATGGATCAATGCGAGGGGAG
ACAATATGAAACTATGGGATGTCTGGTCAGCCATGAAATTTTCACCTTCC
TCCATCTTTCGGGTTGCGTTCACCTCCTCTGTTCCTTCTCAGGACGGGTA
CTGCATCCTCTATCTATTCCAAGGGGCCGTGGTGAACACGGCGGGCAAAT
ACGCCGGGGCCCTCATCGGCACTTTTTTCTTGGCTTTTTCTGTCGAGGCC
TTGCGTCACTTTCGTCTGTGGATGAGGTTGCGCCGCGCCACCGTCGTTCT
CGCGCACGGAGAAAAGGAAGGAGAGGTCGTGACCGGGCCTCCCCTCCGGG
CTCAAGTGCTGCCTATTTTCTTAGAAGCGCTTCTTTTCGGCGTGCACATG
TTCGTGGCCTACCTCATCATGTTGTTGGTCATGCTGTATGAATGGGCCAT
TTTCATCTCCCTCCTGCTGGGCCTGGCCGCCGGGTATTTTACTTTTGAAA
TGTGGGAGGCCTATAGGGTCGCGAATAAGAAGCAACTTCCAAGTGCCATT
GGGGCTATTGGTGGGGGTTGTGGCTGTGTGGACGAAGTGATTCACGTGGC
TGCCGAATCGACAATTCACCCTGGACATGGAGGGCAGCGAAATGGAAATG
GCACCCAAAATTCTGGGGATAAGGTTTAAATGAACATACAAGGAAAGTGA
GGGAACCAAGATTGAAGGTGCAGCAGGGCTATGCGCAAAGTGAGAGCAGT
CATTGCAAGTTCCTGTACGACTTGTCAAGTGATAGACAAGAGAATGTTGC
CAGGTGATAGACAAGAGAATGTTGGAGGATGGGCGTTAATGGACTTGATT
GTGTTTAGTCGTACGTGGTGCGTGCGAGGCCACTTTTTTGAGTAAGAAAG
CAACGAGAAGCTGCTCAATTCCTGCCAAGCCAGGAACCGCGGACATTCTC
AATCTAAATAAAATGAAATGACCATAGGGCATGATGCGCTCATT

protein sequence of rna1175

>rna1175-protein ID=rna1175-protein|Name=rna1175|organism=Nannochloropsis gaditana|type=polypeptide|length=265bp
MRISSHIFVAMRRYSPAYYLSHGQLFVLGSICRGKHGHQGRTAKMDMDMP
GMDMDMPGMDMGGMGDSGGFCQGEGSVMNNGFVFMPQDGYCILYLFQGAV
VNTAGKYAGALIGTFFLAFSVEALRHFRLWMRLRRATVVLAHGEKEGEVV
TGPPLRAQVLPIFLEALLFGVHMFVAYLIMLLVMLYEWAIFISLLLGLAA
GYFTFEMWEAYRVANKKQLPSAIGAIGGGCGCVDEVIHVAAESTIHPGHG
GQRNGNGTQNSGDKV

mRNA from alignment at CM002456.1:1400387..1402380+

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>rna1175 ID=rna1175|Name=rna1175|organism=Nannochloropsis gaditana|type=mRNA|length=1994bp|location=Sequence derived from alignment at CM002456.1:1400387..1402380+ (Nannochloropsis gaditana)
GATGCAAGCCGGACACAAAATCAGCCACACGGCGTAGAACAAAGTGGGGG
AAGTTTCCTATTTGGGGTAAATAATACGTAGACATGCGTATTTCAAGCCA
TATTTTTGTTGCAATGCGTCGCTATTCTCCCGCTTATTACCTCTCACATG
GGCAGCTTTTTGTACTCGGAAGCATTTGCAGAGGAAAGCACGGTCATCAA
GGACGCACCGCAAAGGTAAGAAGATGCTTCTATATCTTTCTTTTTGGGCT
TTCGTCGTCGTACAGTTTGTCTCAAGCAGCAATTTTGTGCAATTCCAAAA
GTTTTCTTTGAACGAAAAGGTTCGAGCAGGGTTGGAACAGCGTGTGTTAT
TTTTTGGTCGTGGAGTCCCTTCAGTTGGTCTGTTCCTCGGGCACGGACGT
GGAAGCCTGTACGGCACTTATTGGGCACGATTTGAGAGAGAATGCGCTTG
ACCTGTTTCTCACCCGAACTCACCTGAAGTGACTATTTTCTCAAGTATTT
TTTGCGGTCATTACTTTCACGGCGCGAGACCCCTTTGGCCTTCGCCCTTT
TTCACTGACATCCTTCCCATGTATTTGCAATGCACACTCATGCTCAATTT
ATTTCGAACTCGAAATTGATTGCCTTTTGTTATCTCACGGCAGATGGATA
TGGATATGCCCGGCATGGATATGGACATGCCCGGGATGGACatgggggga
atgggggatAGCGGGGGCTTttgccagggggagggaagcgttATGAACAA
CGGCTTCGTTTTCATGCCGCAGGTGAGACGCGAACGAAGAAGGATGCATT
TACAATTCGTGGAGACGATGTAAACGACATAGATagtggaagagagggat
gtgaatggaaagaaatgcAGGATTCGAGGAGTAGCGGCCGAGAGCACAGA
ATAATGGATCAATGCGAGGGGAGACAATATGAAACTATGGGATGTCTGGT
CAGCCATGAAAttttcaccttcctccatctttcgGGTTGCGTTCACCTCC
TCTGTTCCTTCTCAGGACGGGTACTGCATCCTCTATCTATTCCAAGGGGC
CGTGGTGAACACGGCGGGCAAATACGCCGGGGCCCTCATCGGCACTTTTT
TCTTGGCTTTTTCTGTCGAGGCCTTGCGTCACTTTCGTCTGTGGATGAGG
TTGCGCCGCGCCACCGTCGTTCTCGCGCacggagaaaaggaaggagaggt
cgTGACCGGGCCTCCCCTCCGGGCTCAAGTGCTGCCTATTTTCTTAGAAG
CGCTTCTTTTCGGCGTGCACATGTTCGTGGCCTACCTCATCATGTTGTTG
GTCATGCTGTATGAATGGGCCattttcatctccctcctgctggGCCTGGC
CGCCGGGTATTTTACTTTTGAAATGTGGGAGGCCTataggtgaggaggga
gggggtatgGACTGTTGAATCAATTTCATAATGATTTTTGATCCTGTATC
TGATCATTTTGACAGTTTCCTTGTACTTTCGATTCTCATGGCACCATCGC
TGCTCTTTTTCTGTAGGGTCGCGAATAAGAAGCAACTTCCAAGTGCCATT
GGGGCTATTGGTGGGGGTTGTGGCTGTGTGGACGAAGTGATTCACGTGGC
TGCCGAATCGACAATTCACCCTGGACATGGAGGGCAGCGAAATGGAAATG
GCACCCAAAATTCTGGGGATAAGGTTTAAATGAACATACAAGGAAAGTGA
GGGAACCAAGATTGAAGGTGCAGCAGGGCTATGCGCAAAGTGAGAGCAGT
CATTGCAAGTTCCTGTACGACTTGTCAAGTGATAGACAAGAGAATGTTGC
CAGGTGATAGACAAGAGAATGTTGGAGGATGGGCGTTAATGGACTTGATT
GTGTTTAGTCGTACGTGGTGCGTGCGAGGCCACTTTTTTGAGTAAGAAAG
CAACGAGAAGCTGCTCAATTCCTGCCAAGCCAGGAACCGCGGACATTCTC
AATCTAAATAAAATGAAATGACCATAGGGCATGATGCGCTCATT

Coding sequence (CDS) from alignment at CM002456.1:1400387..1402380+

>rna1175 ID=rna1175|Name=rna1175|organism=Nannochloropsis gaditana|type=CDS|length=3192bp|location=Sequence derived from alignment at CM002456.1:1400387..1402380+ (Nannochloropsis gaditana)
ATGCGTATTTCAAGCCATATTTTTGTTGCAATGCGTCGCTATTCTCCCGC
TTATTACCTCTCACATGGGCAGCTTTTTGTACTCGGAAGCATTTGCAGAG
GAAAGCACGGTCATCAAGGACGCACCGCAAAGATGGATATGGATATGCCC
GGCATGGATATGGACATGCCCGGGATGGACatggggggaatgggggatAG
CGGGGGCTTttgccagggggagggaagcgttATGAACAACGGCTTCGTTT
TCATGCCGCAGGACGGGTACTGCATCCTCTATCTATTCCAAGGGGCCGTG
GTGAACACGGCGGGCAAATACGCCGGGGCCCTCATCGGCACTTTTTTCTT
GGCTTTTTCTGTCGAGGCCTTGCGTCACTTTCGTCTGTGGATGAGGTTGC
GCCGCGCCACCGTCGTTCTCGCGCacggagaaaaggaaggagaggtcgTG
ACCGGGCCTCCCCTCCGGGCTCAAGTGCTGCCTATTTTCTTAGAAGCGCT
TCTTTTCGGCGTGCACATGTTCGTGGCCTACCTCATCATGTTGTTGGTCA
TGCTGTATGAATGGGCCattttcatctccctcctgctggGCCTGGCCGCC
GGGTATTTTACTTTTGAAATGTGGGAGGCCTatagGGTCGCGAATAAGAA
GCAACTTCCAAGTGCCATTGGGGCTATTGGTGGGGGTTGTGGCTGTGTGG
ACGAAGTGATTCACGTGGCTGCCGAATCGACAATTCACCCTGGACATGGA
GGGCAGCGAAATGGAAATGGCACCCAAAATTCTGGGGATAAGGTTTAAAT
GCGTATTTCAAGCCATATTTTTGTTGCAATGCGTCGCTATTCTCCCGCTT
ATTACCTCTCACATGGGCAGCTTTTTGTACTCGGAAGCATTTGCAGAGGA
AAGCACGGTCATCAAGGACGCACCGCAAAGATGGATATGGATATGCCCGG
CATGGATATGGACATGCCCGGGATGGACatggggggaatgggggatAGCG
GGGGCTTttgccagggggagggaagcgttATGAACAACGGCTTCGTTTTC
ATGCCGCAGGACGGGTACTGCATCCTCTATCTATTCCAAGGGGCCGTGGT
GAACACGGCGGGCAAATACGCCGGGGCCCTCATCGGCACTTTTTTCTTGG
CTTTTTCTGTCGAGGCCTTGCGTCACTTTCGTCTGTGGATGAGGTTGCGC
CGCGCCACCGTCGTTCTCGCGCacggagaaaaggaaggagaggtcgTGAC
CGGGCCTCCCCTCCGGGCTCAAGTGCTGCCTATTTTCTTAGAAGCGCTTC
TTTTCGGCGTGCACATGTTCGTGGCCTACCTCATCATGTTGTTGGTCATG
CTGTATGAATGGGCCattttcatctccctcctgctggGCCTGGCCGCCGG
GTATTTTACTTTTGAAATGTGGGAGGCCTatagGGTCGCGAATAAGAAGC
AACTTCCAAGTGCCATTGGGGCTATTGGTGGGGGTTGTGGCTGTGTGGAC
GAAGTGATTCACGTGGCTGCCGAATCGACAATTCACCCTGGACATGGAGG
GCAGCGAAATGGAAATGGCACCCAAAATTCTGGGGATAAGGTTTAAATGC
GTATTTCAAGCCATATTTTTGTTGCAATGCGTCGCTATTCTCCCGCTTAT
TACCTCTCACATGGGCAGCTTTTTGTACTCGGAAGCATTTGCAGAGGAAA
GCACGGTCATCAAGGACGCACCGCAAAGATGGATATGGATATGCCCGGCA
TGGATATGGACATGCCCGGGATGGACatggggggaatgggggatAGCGGG
GGCTTttgccagggggagggaagcgttATGAACAACGGCTTCGTTTTCAT
GCCGCAGGACGGGTACTGCATCCTCTATCTATTCCAAGGGGCCGTGGTGA
ACACGGCGGGCAAATACGCCGGGGCCCTCATCGGCACTTTTTTCTTGGCT
TTTTCTGTCGAGGCCTTGCGTCACTTTCGTCTGTGGATGAGGTTGCGCCG
CGCCACCGTCGTTCTCGCGCacggagaaaaggaaggagaggtcgTGACCG
GGCCTCCCCTCCGGGCTCAAGTGCTGCCTATTTTCTTAGAAGCGCTTCTT
TTCGGCGTGCACATGTTCGTGGCCTACCTCATCATGTTGTTGGTCATGCT
GTATGAATGGGCCattttcatctccctcctgctggGCCTGGCCGCCGGGT
ATTTTACTTTTGAAATGTGGGAGGCCTatagGGTCGCGAATAAGAAGCAA
CTTCCAAGTGCCATTGGGGCTATTGGTGGGGGTTGTGGCTGTGTGGACGA
AGTGATTCACGTGGCTGCCGAATCGACAATTCACCCTGGACATGGAGGGC
AGCGAAATGGAAATGGCACCCAAAATTCTGGGGATAAGGTTTAAATGCGT
ATTTCAAGCCATATTTTTGTTGCAATGCGTCGCTATTCTCCCGCTTATTA
CCTCTCACATGGGCAGCTTTTTGTACTCGGAAGCATTTGCAGAGGAAAGC
ACGGTCATCAAGGACGCACCGCAAAGATGGATATGGATATGCCCGGCATG
GATATGGACATGCCCGGGATGGACatggggggaatgggggatAGCGGGGG
CTTttgccagggggagggaagcgttATGAACAACGGCTTCGTTTTCATGC
CGCAGGACGGGTACTGCATCCTCTATCTATTCCAAGGGGCCGTGGTGAAC
ACGGCGGGCAAATACGCCGGGGCCCTCATCGGCACTTTTTTCTTGGCTTT
TTCTGTCGAGGCCTTGCGTCACTTTCGTCTGTGGATGAGGTTGCGCCGCG
CCACCGTCGTTCTCGCGCacggagaaaaggaaggagaggtcgTGACCGGG
CCTCCCCTCCGGGCTCAAGTGCTGCCTATTTTCTTAGAAGCGCTTCTTTT
CGGCGTGCACATGTTCGTGGCCTACCTCATCATGTTGTTGGTCATGCTGT
ATGAATGGGCCattttcatctccctcctgctggGCCTGGCCGCCGGGTAT
TTTACTTTTGAAATGTGGGAGGCCTatagGGTCGCGAATAAGAAGCAACT
TCCAAGTGCCATTGGGGCTATTGGTGGGGGTTGTGGCTGTGTGGACGAAG
TGATTCACGTGGCTGCCGAATCGACAATTCACCCTGGACATGGAGGGCAG
CGAAATGGAAATGGCACCCAAAATTCTGGGGATAAGGTTTAA

Synonyms

Publications