EWM29496.1, cds1174 (CDS) Nannochloropsis gaditana

Overview
NameEWM29496.1
Unique Namecds1174
TypeCDS
OrganismNannochloropsis gaditana (N. gaditana B-31)
Alignment locationCM002456.1:1400470..1400601 +
Alignment locationCM002456.1:1401030..1401158 +
Alignment locationCM002456.1:1401402..1401775 +
Alignment locationCM002456.1:1401903..1402065 +

Link to JBrowse

Properties
Property NameValue
Protein idEWM29496.1
Productsolute carrier family 31 (copper transporters) member 1
Orig transcript idgnl|cribi|Naga_100287g8.6252.mrna
GbkeyCDS
Noteencoded by transcript variant 1; alternatively spliced
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
CM002456.1supercontigCM002456.1:1400470..1400601 +
CM002456.1supercontigCM002456.1:1401030..1401158 +
CM002456.1supercontigCM002456.1:1401402..1401775 +
CM002456.1supercontigCM002456.1:1401903..1402065 +
Analyses
This CDS is derived from or has results from the following analyses
Analysis NameDate Performed
GO annotation for N. gaditana B312020-04-08
BLAST analysis for N. gaditana B-312020-04-07
InterPro analysis for N. gaditana B-312020-04-06
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
The following terms have been associated with this CDS:
Vocabulary: Biological Process
TermDefinition
GO:0009987cellular process
GO:0006810transport
GO:0035434copper ion transmembrane transport
Vocabulary: Molecular Function
TermDefinition
GO:0005215transporter activity
GO:0005375copper ion transmembrane transporter activity
Vocabulary: Cellular Component
TermDefinition
GO:0016020membrane
GO:0016021integral component of membrane
Vocabulary: INTERPRO
TermDefinition
IPR007274Cop_transporter
Homology
BLAST of EWM29496.1 vs. NCBI_GenBank
Match: gi|585112050|gb|EWM29496.1| (solute carrier family 31 (copper transporters) member 1 [Nannochloropsis gaditana])

HSP 1 Score: 544.658 bits (1402), Expect = 0.000e+0
Identity = 265/265 (100.00%), Postives = 265/265 (100.00%), Query Frame = 0
Query:    1 MRISSHIFVAMRRYSPAYYLSHGQLFVLGSICRGKHGHQGRTAKMDMDMPGMDMDMPGMDMGGMGDSGGFCQGEGSVMNNGFVFMPQDGYCILYLFQGAVVNTAGKYAGALIGTFFLAFSVEALRHFRLWMRLRRATVVLAHGEKEGEVVTGPPLRAQVLPIFLEALLFGVHMFVAYLIMLLVMLYEWAIFISLLLGLAAGYFTFEMWEAYRVANKKQLPSAIGAIGGGCGCVDEVIHVAAESTIHPGHGGQRNGNGTQNSGDKV 265
            MRISSHIFVAMRRYSPAYYLSHGQLFVLGSICRGKHGHQGRTAKMDMDMPGMDMDMPGMDMGGMGDSGGFCQGEGSVMNNGFVFMPQDGYCILYLFQGAVVNTAGKYAGALIGTFFLAFSVEALRHFRLWMRLRRATVVLAHGEKEGEVVTGPPLRAQVLPIFLEALLFGVHMFVAYLIMLLVMLYEWAIFISLLLGLAAGYFTFEMWEAYRVANKKQLPSAIGAIGGGCGCVDEVIHVAAESTIHPGHGGQRNGNGTQNSGDKV
Sbjct:    1 MRISSHIFVAMRRYSPAYYLSHGQLFVLGSICRGKHGHQGRTAKMDMDMPGMDMDMPGMDMGGMGDSGGFCQGEGSVMNNGFVFMPQDGYCILYLFQGAVVNTAGKYAGALIGTFFLAFSVEALRHFRLWMRLRRATVVLAHGEKEGEVVTGPPLRAQVLPIFLEALLFGVHMFVAYLIMLLVMLYEWAIFISLLLGLAAGYFTFEMWEAYRVANKKQLPSAIGAIGGGCGCVDEVIHVAAESTIHPGHGGQRNGNGTQNSGDKV 265          
BLAST of EWM29496.1 vs. NCBI_GenBank
Match: gi|553190865|ref|XP_005855280.1| (solute carrier family 31 (copper transporters) member 1 [Nannochloropsis gaditana CCMP526] >gi|422293781|gb|EKU21081.1| solute carrier family 31 (copper transporters) member 1 [Nannochloropsis gaditana CCMP526])

HSP 1 Score: 525.398 bits (1352), Expect = 0.000e+0
Identity = 255/255 (100.00%), Postives = 255/255 (100.00%), Query Frame = 0
Query:   11 MRRYSPAYYLSHGQLFVLGSICRGKHGHQGRTAKMDMDMPGMDMDMPGMDMGGMGDSGGFCQGEGSVMNNGFVFMPQDGYCILYLFQGAVVNTAGKYAGALIGTFFLAFSVEALRHFRLWMRLRRATVVLAHGEKEGEVVTGPPLRAQVLPIFLEALLFGVHMFVAYLIMLLVMLYEWAIFISLLLGLAAGYFTFEMWEAYRVANKKQLPSAIGAIGGGCGCVDEVIHVAAESTIHPGHGGQRNGNGTQNSGDKV 265
            MRRYSPAYYLSHGQLFVLGSICRGKHGHQGRTAKMDMDMPGMDMDMPGMDMGGMGDSGGFCQGEGSVMNNGFVFMPQDGYCILYLFQGAVVNTAGKYAGALIGTFFLAFSVEALRHFRLWMRLRRATVVLAHGEKEGEVVTGPPLRAQVLPIFLEALLFGVHMFVAYLIMLLVMLYEWAIFISLLLGLAAGYFTFEMWEAYRVANKKQLPSAIGAIGGGCGCVDEVIHVAAESTIHPGHGGQRNGNGTQNSGDKV
Sbjct:    1 MRRYSPAYYLSHGQLFVLGSICRGKHGHQGRTAKMDMDMPGMDMDMPGMDMGGMGDSGGFCQGEGSVMNNGFVFMPQDGYCILYLFQGAVVNTAGKYAGALIGTFFLAFSVEALRHFRLWMRLRRATVVLAHGEKEGEVVTGPPLRAQVLPIFLEALLFGVHMFVAYLIMLLVMLYEWAIFISLLLGLAAGYFTFEMWEAYRVANKKQLPSAIGAIGGGCGCVDEVIHVAAESTIHPGHGGQRNGNGTQNSGDKV 255          
BLAST of EWM29496.1 vs. NCBI_GenBank
Match: gi|585112051|gb|EWM29497.1| (solute carrier family 31 (copper transporters) member 1 [Nannochloropsis gaditana])

HSP 1 Score: 367.081 bits (941), Expect = 1.250e-126
Identity = 179/179 (100.00%), Postives = 179/179 (100.00%), Query Frame = 0
Query:   87 QDGYCILYLFQGAVVNTAGKYAGALIGTFFLAFSVEALRHFRLWMRLRRATVVLAHGEKEGEVVTGPPLRAQVLPIFLEALLFGVHMFVAYLIMLLVMLYEWAIFISLLLGLAAGYFTFEMWEAYRVANKKQLPSAIGAIGGGCGCVDEVIHVAAESTIHPGHGGQRNGNGTQNSGDKV 265
            QDGYCILYLFQGAVVNTAGKYAGALIGTFFLAFSVEALRHFRLWMRLRRATVVLAHGEKEGEVVTGPPLRAQVLPIFLEALLFGVHMFVAYLIMLLVMLYEWAIFISLLLGLAAGYFTFEMWEAYRVANKKQLPSAIGAIGGGCGCVDEVIHVAAESTIHPGHGGQRNGNGTQNSGDKV
Sbjct:   29 QDGYCILYLFQGAVVNTAGKYAGALIGTFFLAFSVEALRHFRLWMRLRRATVVLAHGEKEGEVVTGPPLRAQVLPIFLEALLFGVHMFVAYLIMLLVMLYEWAIFISLLLGLAAGYFTFEMWEAYRVANKKQLPSAIGAIGGGCGCVDEVIHVAAESTIHPGHGGQRNGNGTQNSGDKV 207          
BLAST of EWM29496.1 vs. NCBI_GenBank
Match: gi|167520778|ref|XP_001744728.1| (hypothetical protein [Monosiga brevicollis MX1] >gi|163777059|gb|EDQ90677.1| predicted protein [Monosiga brevicollis MX1])

HSP 1 Score: 92.4337 bits (228), Expect = 1.354e-19
Identity = 65/167 (38.92%), Postives = 86/167 (51.50%), Query Frame = 0
Query:   67 SGGFCQGEGSVMNNGFVFMPQDGYCILYLFQGAVVNTAGKYAGALIGTFFLAFSVEALRHFRLWMRLRRATVVLAHGEKEGEVVTGPPLRAQVLPIFLEALLFGVHMFVAYLIMLLVMLYEWAIFISLLLGLAAGYFTFEMWE-------AYRVANKKQLPSAIGAI 226
            S GFC G G VMN+GF   P   +C ++LF   V++TAGKYA ALIGTF +    E  R    W R R           E +  T P     +L     AL +G+HM  AY +MLLVMLYE   F+ ++LGLA G F     +       AY+  + ++ PSA+  I
Sbjct:   11 SNGFCSGSGMVMNDGFGRAPS--FCPIFLFHNVVIDTAGKYAIALIGTFCMGLFNELFR----WYRNR----------LEAQESTRP-----ILQDLCVALSYGIHMLNAYFLMLLVMLYESLFFVMIILGLATGSFVVRQLQRHVRKVGAYQDLDGRK-PSALTPI 155          
BLAST of EWM29496.1 vs. NCBI_GenBank
Match: gi|298710761|emb|CBJ32181.1| (conserved unknown protein [Ectocarpus siliculosus])

HSP 1 Score: 89.7373 bits (221), Expect = 2.028e-18
Identity = 61/174 (35.06%), Postives = 84/174 (48.28%), Query Frame = 0
Query:   70 FCQGEGSVMNNGFVFMPQDGY-CILYLFQGAVVNTAGKYAGALIGTFFLAFSVEALRHFRLWMRLRRATVVLAHGEKEGEVVTGPPLRAQVLPIFLEALLFGVHMFVAYLIMLLVMLYEWAIFISLLLGLAAGYFTFEMWE------AYRVANKKQLPSAIGAIGGGCGCVDEV 236
            FC G+G+VM  GF         CIL+LF+GA V+T  KYA A +G FF+ F+ E +R+ R  M             K  +V     L+            F V +++AY++MLLVMLYE+ I I ++ GLA G+     W       A R A  K  P  +G+ G  C   D V
Sbjct:   26 FCNGDGTVMLMGFQSATSASVNCILFLFEGAGVDTKTKYAFAALGAFFMGFANEMIRYGRDRM------------AKTSDVSLASDLKMTAA--------FAVQIYLAYMLMLLVMLYEYVILIMIISGLATGHLLTLRWSAGRRRAALRDAGAKTPPEVMGSSGTPCCNTDTV 179          
BLAST of EWM29496.1 vs. NCBI_GenBank
Match: gi|298704943|emb|CBJ28446.1| (conserved unknown protein [Ectocarpus siliculosus])

HSP 1 Score: 86.2705 bits (212), Expect = 8.264e-17
Identity = 62/170 (36.47%), Postives = 84/170 (49.41%), Query Frame = 0
Query:   64 MGDSGGFCQGEGSVMNNGF-VFMPQDGYCILYLFQGAVVNTAGKYAGALIGTFFLAFSVEALRHFRLWMRLRRATVVLAHGEKEGEVVTGPPLRAQVLPIFLEALLFGVHMFVAYLIMLLVMLYEWAIFISLLLGLAAGYF-TFEMWEAYRVANKKQLPSAIGAIGGGCG 231
            MGD   FC+G+G+VM  GF         CIL+LF+GA V+T  KYA A +G F + F+ E +R+ R  M             K   V  G  ++A           F V MF+AY++MLLVMLYE+ I I ++ GLAAG+  T  +    R A  K        + G  G
Sbjct:   49 MGDQ--FCEGDGTVMLMGFQAATSASVRCILFLFEGAGVDTKTKYAFAALGAFCMGFANEMIRYGRDRM------------AKASGVCVGSDVKAT--------FAFAVQMFLAYMLMLLVMLYEYVILIMIISGLAAGHLVTLRLSAGRRRAALKDGAKEASGVAGSSG 196          
BLAST of EWM29496.1 vs. NCBI_GenBank
Match: gi|325188848|emb|CCA23376.1| (alpha putative [Albugo laibachii Nc14])

HSP 1 Score: 81.6481 bits (200), Expect = 7.851e-14
Identity = 53/149 (35.57%), Postives = 70/149 (46.98%), Query Frame = 0
Query:   62 GGMGDSGGFCQGEGSVMNNGFVFMPQDGYCILYLFQGAVVNTAGKYAGALIGTFFLAFSVEAL----RHFRLWMRLRRATVVLAHGEKEGEVVTGPPLRAQVLPIFLEALLFGVHMFVAYLIMLLVMLYEWAIFISLLLGLAAGYFTFE 206
            G   D   FC GEGSVM NGF  +   G C+   F   V+NT  KYA    G F +A   E L      FR  MR    T  L    K+G +VT                L+ + M +AY  ML+VM+YE  +FI+L++G   G+  F+
Sbjct:  208 GDGSDPATFCTGEGSVMFNGFQ-LSASGSCVRLFFTSWVLNTEIKYALGFAGVFLIAVFNEFLATFRERFRQKMRESPGTNRLDQMGKKGMLVT----------------LYMIQMTIAYFAMLVVMIYETGLFIALMMGFCTGFLLFK 339          
BLAST of EWM29496.1 vs. NCBI_GenBank
Match: gi|695408187|ref|XP_009524573.1| (hypothetical protein PHYSODRAFT_313872 [Phytophthora sojae] >gi|348682040|gb|EGZ21856.1| hypothetical protein PHYSODRAFT_313872 [Phytophthora sojae])

HSP 1 Score: 79.337 bits (194), Expect = 2.877e-13
Identity = 59/171 (34.50%), Postives = 82/171 (47.95%), Query Frame = 0
Query:   70 FCQGEGSVMNNGFVFMPQDGYCILYLFQGAVVNTAGKYAGALIGTFFLAFSVEALRHFRLWMRLRRATVVLAHGEKEGEVVTGPPLRAQVLPIFLEALLFGVHMFVAYLIMLLVMLYEWAIFISLLLGLAAGYFTFEMWE--------AYRVANKKQLPSAIGAIGGGCGC 232
            FC G+GSVM NGF     +G C++ +FQ  V+NTA KYA   IG F LA   E L   R  +R +          K  ++     L      + L A+L+ V M VAY  ML+VM YE  +FI+LL G  AG+  F+  +        A+R  N   +   +G +     C
Sbjct:  197 FCTGQGSVMFNGFQ-TSINGSCVMLIFQPWVLNTAVKYAFGFIGCFLLAVMNELLAKARELVRKKLL--------KARKLRPTDKLHKMQCKLVL-AVLYMVQMTVAYFAMLIVMTYETGLFIALLAGFGAGFMLFKNVDLDIMEERGAWRFTNPSTVRIEVGGMTCKTNC 357          
BLAST of EWM29496.1 vs. NCBI_GenBank
Match: gi|635365373|emb|CCI46245.1| (unnamed protein product [Albugo candida])

HSP 1 Score: 78.1814 bits (191), Expect = 7.276e-13
Identity = 67/197 (34.01%), Postives = 93/197 (47.21%), Query Frame = 0
Query:   26 FVLGSICRGKHGHQGRTAKMDMDMPGMDM----DMPGMDMGGMGDSGGFCQGEGSVMNNGFVFMPQDGYCILYLFQGAVVNTAGKYAGALIGTFFLAFSVEALRHFRLWMRLRRATVVLAHGEKEGEVVTGPPLRAQVLPIFLEALLFGVHMFVAYLIMLLVMLYEWAIFISLLLGLAAGYFTFEMWEAYRVANKKQ 218
             V  +IC+        T K D+     D     D   +  G   +  GFC G+GSVM NGF    + G CI   F   V+N+  KYA   IG F +A   E L   R   +LRR   V+  G+K         L  +     + A L+ + M VAYL ML+VM YE  +FI+L+LG  AG+  F+  +   V NK++
Sbjct:  171 LVQTAICKDTQCADLNTIK-DLSQASKDFVSKYDAVAL-AGTPSEPEGFCTGKGSVMLNGFQSSVK-GSCIRLFFYPWVLNSQVKYAFGFIGIFLMAVGNEYLAKVR--EQLRRN--VMRKGKKRN-------LTYRRKWTLVLASLYMIQMVVAYLAMLVVMTYETGLFIALILGFGAGFLLFKNID-LDVVNKQE 352          
BLAST of EWM29496.1 vs. NCBI_GenBank
Match: gi|1214691095|gb|OWZ06116.1| (Alpha kinase, partial [Phytophthora megakarya])

HSP 1 Score: 77.0258 bits (188), Expect = 1.716e-12
Identity = 50/142 (35.21%), Postives = 76/142 (53.52%), Query Frame = 0
Query:   68 GGFCQGEGSVMNNGFVFMPQDGYCILYLFQGAVVNTAGKYAGALIGTFFLAFSVEALRHFRLWMRLRRATVVLAHGEKEGEVVTGPPLRAQVLPIFLEALLFGVHMFVAYLIMLLVMLYEWAIFISLLLGLAAGYFTFEMWE 209
             GFC G+GSVM NGF      G C++ LFQ  V+N+  KYA   IG F +A   E+L   R  +R R   ++ A   +  +       +A +      A+L+ + M +AY  ML+VM YE  +F++L++G  AG+  F+  E
Sbjct:  222 SGFCSGQGSVMFNGFQSSVH-GSCVMLLFQPWVLNSGVKYAFGFIGCFLIALLNESLVKGREVVRQR---LLTARKLRPHDKFHKMQCKATL------AVLYMIQMTIAYFAMLVVMTYETGLFVALIIGFGAGFLLFKNLE 353          
The following BLAST results are available for this feature:
BLAST of EWM29496.1 vs. NCBI_GenBank
Analysis Date: 2020-04-07 (BLAST analysis for N. gaditana B-31)
Total hits: 10
Match NameE-valueIdentityDescription
gi|585112050|gb|EWM29496.1|0.000e+0100.00solute carrier family 31 (copper transporters) mem... [more]
gi|553190865|ref|XP_005855280.1|0.000e+0100.00solute carrier family 31 (copper transporters) mem... [more]
gi|585112051|gb|EWM29497.1|1.250e-126100.00solute carrier family 31 (copper transporters) mem... [more]
gi|167520778|ref|XP_001744728.1|1.354e-1938.92hypothetical protein [Monosiga brevicollis MX1] >g... [more]
gi|298710761|emb|CBJ32181.1|2.028e-1835.06conserved unknown protein [Ectocarpus siliculosus][more]
gi|298704943|emb|CBJ28446.1|8.264e-1736.47conserved unknown protein [Ectocarpus siliculosus][more]
gi|325188848|emb|CCA23376.1|7.851e-1435.57alpha putative [Albugo laibachii Nc14][more]
gi|695408187|ref|XP_009524573.1|2.877e-1334.50hypothetical protein PHYSODRAFT_313872 [Phytophtho... [more]
gi|635365373|emb|CCI46245.1|7.276e-1334.01unnamed protein product [Albugo candida][more]
gi|1214691095|gb|OWZ06116.1|1.716e-1235.21Alpha kinase, partial [Phytophthora megakarya][more]
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Relationships

This CDS is a part of the following mRNA feature(s):

Feature NameUnique NameSpeciesType
rna1175rna1175Nannochloropsis gaditana (N. gaditana B-31)mRNA


Sequences
Synonyms
Publications