rna1174, rna1174 (mRNA) Nannochloropsis gaditana

Overview
Namerna1174
Unique Namerna1174
TypemRNA
OrganismNannochloropsis gaditana (N. gaditana B-31)
Sequence length985
Alignment locationCM002456.1:1400382..1402380 +

Link to JBrowse

Properties
Property NameValue
Productsolute carrier family 31 (copper transporters) member 1
Orig transcript idgnl|cribi|Naga_100287g8.6253.mrna
Orig protein idgnl|cribi|Naga_100287g8.6253
GbkeymRNA
Noteencoded by transcript variant 2; alternatively spliced
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
CM002456.1supercontigCM002456.1:1400382..1402380 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
Naga_100287g8gene1131Nannochloropsis gaditana (N. gaditana B-31)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
rna1174rna1174-proteinNannochloropsis gaditana (N. gaditana B-31)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
EWM29497.1cds1173Nannochloropsis gaditana (N. gaditana B-31)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>rna1174 ID=rna1174|Name=rna1174|organism=Nannochloropsis gaditana|type=mRNA|length=985bp
GGAAGGCAGGAGGAGGGGGACGCAGGGAAGACGTCAAAAGAGGGGACGGT
CGCACTGGATAAAGTTCGAGCGGATCAGTCCACATATTATTATTTAGTTC
GTATGCTGGTAAGGGCAAAACGCGTGCTGCCCGCTTTCGAGTTGGTCAAG
GCCATGCTCCGGCCCGCTCCATCCTCGACTCCTCCTGATCACGCGGCTAG
CCTCCCTCCCTCCCTCCCTCCCTCCCTTCCTCCCTCCCTTCCTCCACCGA
ACGCGGAGACTTTGGGGGTGCTGATGGAGGCCTTAGGCAGGCGGGGGGAG
GTAGAGCCAGCGTTGTATCTTTTGGAGGTGATGGTGGAGGACTTGAAATA
CACTCCGCGGGAATGGTTTTTAACCCCCTTGCGTCGCATCATGATAAGCC
AGGGGTTGAGCCATCCGCTGATGCCGCCGGATCCCAGGGCCTGGTTGCGT
GAGGGGCTGCAGATACGACGTCGGGTCGACAAGGGAGGACGGTCGCTGAG
ACAATTGATCAAAAGTAGCATGCGGGCGGGGCAATAGAGTGCCAGCAAGG
AGAGAGGACACAAAGTCTCTCTTCTTTGTTTGGATGCTCTAATGGCGGGG
GTTTTCGGATCATGTGGGGTATTTTTGTAAACATTGCTTTATAGTAGACG
AAAATCCGCCTTTACAAAGAATTCCTAAGAGTGCAGATAAAGTTTGGCAA
CGCAACGTAAAAGAAGAAGCAAAGCGTAGAACGATAAAACTCTTTTCGTG
TCATGGCCGACTGAATCACGTCAGAAGGCTTTTGATTGGTCTAGAATTGA
TGTGAAATAATGCCTTCTACAAAAGATTCAATGTTGGGTTTCAAAGCCCG
AGGAGAGGAGTGTTAGGGAAACCACTACAATCGGAGAGATTGGATTTGAA
GTCATTTTGGAAAGCGTTTAAAGATATGCCAGAAGGAACTATGAAATATC
TATTATGATACCAAAGAAACATGCATCCTTTTTGG
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protein sequence of rna1174

>rna1174-protein ID=rna1174-protein|Name=rna1174|organism=Nannochloropsis gaditana|type=polypeptide|length=207bp
MKLWDVWSAMKFSPSSIFRVAFTSSVPSQDGYCILYLFQGAVVNTAGKYA
GALIGTFFLAFSVEALRHFRLWMRLRRATVVLAHGEKEGEVVTGPPLRAQ
VLPIFLEALLFGVHMFVAYLIMLLVMLYEWAIFISLLLGLAAGYFTFEMW
EAYRVANKKQLPSAIGAIGGGCGCVDEVIHVAAESTIHPGHGGQRNGNGT
QNSGDKV
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mRNA from alignment at CM002456.1:1400382..1402380+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>rna1174 ID=rna1174|Name=rna1174|organism=Nannochloropsis gaditana|type=mRNA|length=1999bp|location=Sequence derived from alignment at CM002456.1:1400382..1402380+ (Nannochloropsis gaditana)
GAAGCGATGCAAGCCGGACACAAAATCAGCCACACGGCGTAGAACAAAGT
GGGGGAAGTTTCCTATTTGGGGTAAATAATACGTAGACATGCGTATTTCA
AGCCATATTTTTGTTGCAATGCGTCGCTATTCTCCCGCTTATTACCTCTC
ACATGGGCAGCTTTTTGTACTCGGAAGCATTTGCAGAGGAAAGCACGGTC
ATCAAGGACGCACCGCAAAGGTAAGAAGATGCTTCTATATCTTTCTTTTT
GGGCTTTCGTCGTCGTACAGTTTGTCTCAAGCAGCAATTTTGTGCAATTC
CAAAAGTTTTCTTTGAACGAAAAGGTTCGAGCAGGGTTGGAACAGCGTGT
GTTATTTTTTGGTCGTGGAGTCCCTTCAGTTGGTCTGTTCCTCGGGCACG
GACGTGGAAGCCTGTACGGCACTTATTGGGCACGATTTGAGAGAGAATGC
GCTTGACCTGTTTCTCACCCGAACTCACCTGAAGTGACTATTTTCTCAAG
TATTTTTTGCGGTCATTACTTTCACGGCGCGAGACCCCTTTGGCCTTCGC
CCTTTTTCACTGACATCCTTCCCATGTATTTGCAATGCACACTCATGCTC
AATTTATTTCGAACTCGAAATTGATTGCCTTTTGTTATCTCACGGCAGAT
GGATATGGATATGCCCGGCATGGATATGGACATGCCCGGGATGGACatgg
ggggaatgggggatAGCGGGGGCTTttgccagggggagggaagcgttATG
AACAACGGCTTCGTTTTCATGCCGCAGGTGAGACGCGAACGAAGAAGGAT
GCATTTACAATTCGTGGAGACGATGTAAACGACATAGATagtggaagaga
gggatgtgaatggaaagaaatgcAGGATTCGAGGAGTAGCGGCCGAGAGC
ACAGAATAATGGATCAATGCGAGGGGAGACAATATGAAACTATGGGATGT
CTGGTCAGCCATGAAAttttcaccttcctccatctttcgGGTTGCGTTCA
CCTCCTCTGTTCCTTCTCAGGACGGGTACTGCATCCTCTATCTATTCCAA
GGGGCCGTGGTGAACACGGCGGGCAAATACGCCGGGGCCCTCATCGGCAC
TTTTTTCTTGGCTTTTTCTGTCGAGGCCTTGCGTCACTTTCGTCTGTGGA
TGAGGTTGCGCCGCGCCACCGTCGTTCTCGCGCacggagaaaaggaagga
gaggtcgTGACCGGGCCTCCCCTCCGGGCTCAAGTGCTGCCTATTTTCTT
AGAAGCGCTTCTTTTCGGCGTGCACATGTTCGTGGCCTACCTCATCATGT
TGTTGGTCATGCTGTATGAATGGGCCattttcatctccctcctgctggGC
CTGGCCGCCGGGTATTTTACTTTTGAAATGTGGGAGGCCTataggtgagg
agggagggggtatgGACTGTTGAATCAATTTCATAATGATTTTTGATCCT
GTATCTGATCATTTTGACAGTTTCCTTGTACTTTCGATTCTCATGGCACC
ATCGCTGCTCTTTTTCTGTAGGGTCGCGAATAAGAAGCAACTTCCAAGTG
CCATTGGGGCTATTGGTGGGGGTTGTGGCTGTGTGGACGAAGTGATTCAC
GTGGCTGCCGAATCGACAATTCACCCTGGACATGGAGGGCAGCGAAATGG
AAATGGCACCCAAAATTCTGGGGATAAGGTTTAAATGAACATACAAGGAA
AGTGAGGGAACCAAGATTGAAGGTGCAGCAGGGCTATGCGCAAAGTGAGA
GCAGTCATTGCAAGTTCCTGTACGACTTGTCAAGTGATAGACAAGAGAAT
GTTGCCAGGTGATAGACAAGAGAATGTTGGAGGATGGGCGTTAATGGACT
TGATTGTGTTTAGTCGTACGTGGTGCGTGCGAGGCCACTTTTTTGAGTAA
GAAAGCAACGAGAAGCTGCTCAATTCCTGCCAAGCCAGGAACCGCGGACA
TTCTCAATCTAAATAAAATGAAATGACCATAGGGCATGATGCGCTCATT
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Coding sequence (CDS) from alignment at CM002456.1:1400382..1402380+

>rna1174 ID=rna1174|Name=rna1174|organism=Nannochloropsis gaditana|type=CDS|length=1248bp|location=Sequence derived from alignment at CM002456.1:1400382..1402380+ (Nannochloropsis gaditana)
ATGAAACTATGGGATGTCTGGTCAGCCATGAAAttttcaccttcctccat
ctttcgGGTTGCGTTCACCTCCTCTGTTCCTTCTCAGGACGGGTACTGCA
TCCTCTATCTATTCCAAGGGGCCGTGGTGAACACGGCGGGCAAATACGCC
GGGGCCCTCATCGGCACTTTTTTCTTGGCTTTTTCTGTCGAGGCCTTGCG
TCACTTTCGTCTGTGGATGAGGTTGCGCCGCGCCACCGTCGTTCTCGCGC
acggagaaaaggaaggagaggtcgTGACCGGGCCTCCCCTCCGGGCTCAA
GTGCTGCCTATTTTCTTAGAAGCGCTTCTTTTCGGCGTGCACATGTTCGT
GGCCTACCTCATCATGTTGTTGGTCATGCTGTATGAATGGGCCattttca
tctccctcctgctggGCCTGGCCGCCGGGTATTTTACTTTTGAAATGTGG
GAGGCCTatagGGTCGCGAATAAGAAGCAACTTCCAAGTGCCATTGGGGC
TATTGGTGGGGGTTGTGGCTGTGTGGACGAAGTGATTCACGTGGCTGCCG
AATCGACAATTCACCCTGGACATGGAGGGCAGCGAAATGGAAATGGCACC
CAAAATTCTGGGGATAAGGTTTAAATGAAACTATGGGATGTCTGGTCAGC
CATGAAAttttcaccttcctccatctttcgGGTTGCGTTCACCTCCTCTG
TTCCTTCTCAGGACGGGTACTGCATCCTCTATCTATTCCAAGGGGCCGTG
GTGAACACGGCGGGCAAATACGCCGGGGCCCTCATCGGCACTTTTTTCTT
GGCTTTTTCTGTCGAGGCCTTGCGTCACTTTCGTCTGTGGATGAGGTTGC
GCCGCGCCACCGTCGTTCTCGCGCacggagaaaaggaaggagaggtcgTG
ACCGGGCCTCCCCTCCGGGCTCAAGTGCTGCCTATTTTCTTAGAAGCGCT
TCTTTTCGGCGTGCACATGTTCGTGGCCTACCTCATCATGTTGTTGGTCA
TGCTGTATGAATGGGCCattttcatctccctcctgctggGCCTGGCCGCC
GGGTATTTTACTTTTGAAATGTGGGAGGCCTatagGGTCGCGAATAAGAA
GCAACTTCCAAGTGCCATTGGGGCTATTGGTGGGGGTTGTGGCTGTGTGG
ACGAAGTGATTCACGTGGCTGCCGAATCGACAATTCACCCTGGACATGGA
GGGCAGCGAAATGGAAATGGCACCCAAAATTCTGGGGATAAGGTTTAA
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Synonyms
Publications