EWM29497.1, cds1173 (CDS) Nannochloropsis gaditana

Overview
NameEWM29497.1
Unique Namecds1173
TypeCDS
OrganismNannochloropsis gaditana (N. gaditana B-31)
Alignment locationCM002456.1:1401315..1401775 +
Alignment locationCM002456.1:1401903..1402065 +

Link to JBrowse

Properties
Property NameValue
Protein idEWM29497.1
Productsolute carrier family 31 (copper transporters) member 1
Orig transcript idgnl|cribi|Naga_100287g8.6253.mrna
GbkeyCDS
Noteencoded by transcript variant 2; alternatively spliced
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
CM002456.1supercontigCM002456.1:1401315..1401775 +
CM002456.1supercontigCM002456.1:1401903..1402065 +
Analyses
This CDS is derived from or has results from the following analyses
Analysis NameDate Performed
GO annotation for N. gaditana B312020-04-08
BLAST analysis for N. gaditana B-312020-04-07
InterPro analysis for N. gaditana B-312020-04-06
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
The following terms have been associated with this CDS:
Vocabulary: Biological Process
TermDefinition
GO:0009987cellular process
GO:0006810transport
GO:0035434copper ion transmembrane transport
Vocabulary: Molecular Function
TermDefinition
GO:0005215transporter activity
GO:0005375copper ion transmembrane transporter activity
Vocabulary: Cellular Component
TermDefinition
GO:0016020membrane
GO:0016021integral component of membrane
Vocabulary: INTERPRO
TermDefinition
IPR007274Cop_transporter
Homology
BLAST of EWM29497.1 vs. NCBI_GenBank
Match: gi|585112051|gb|EWM29497.1| (solute carrier family 31 (copper transporters) member 1 [Nannochloropsis gaditana])

HSP 1 Score: 424.861 bits (1091), Expect = 1.475e-150
Identity = 207/207 (100.00%), Postives = 207/207 (100.00%), Query Frame = 0
Query:    1 MKLWDVWSAMKFSPSSIFRVAFTSSVPSQDGYCILYLFQGAVVNTAGKYAGALIGTFFLAFSVEALRHFRLWMRLRRATVVLAHGEKEGEVVTGPPLRAQVLPIFLEALLFGVHMFVAYLIMLLVMLYEWAIFISLLLGLAAGYFTFEMWEAYRVANKKQLPSAIGAIGGGCGCVDEVIHVAAESTIHPGHGGQRNGNGTQNSGDKV 207
            MKLWDVWSAMKFSPSSIFRVAFTSSVPSQDGYCILYLFQGAVVNTAGKYAGALIGTFFLAFSVEALRHFRLWMRLRRATVVLAHGEKEGEVVTGPPLRAQVLPIFLEALLFGVHMFVAYLIMLLVMLYEWAIFISLLLGLAAGYFTFEMWEAYRVANKKQLPSAIGAIGGGCGCVDEVIHVAAESTIHPGHGGQRNGNGTQNSGDKV
Sbjct:    1 MKLWDVWSAMKFSPSSIFRVAFTSSVPSQDGYCILYLFQGAVVNTAGKYAGALIGTFFLAFSVEALRHFRLWMRLRRATVVLAHGEKEGEVVTGPPLRAQVLPIFLEALLFGVHMFVAYLIMLLVMLYEWAIFISLLLGLAAGYFTFEMWEAYRVANKKQLPSAIGAIGGGCGCVDEVIHVAAESTIHPGHGGQRNGNGTQNSGDKV 207          
BLAST of EWM29497.1 vs. NCBI_GenBank
Match: gi|553190865|ref|XP_005855280.1| (solute carrier family 31 (copper transporters) member 1 [Nannochloropsis gaditana CCMP526] >gi|422293781|gb|EKU21081.1| solute carrier family 31 (copper transporters) member 1 [Nannochloropsis gaditana CCMP526])

HSP 1 Score: 366.696 bits (940), Expect = 8.841e-127
Identity = 179/179 (100.00%), Postives = 179/179 (100.00%), Query Frame = 0
Query:   29 QDGYCILYLFQGAVVNTAGKYAGALIGTFFLAFSVEALRHFRLWMRLRRATVVLAHGEKEGEVVTGPPLRAQVLPIFLEALLFGVHMFVAYLIMLLVMLYEWAIFISLLLGLAAGYFTFEMWEAYRVANKKQLPSAIGAIGGGCGCVDEVIHVAAESTIHPGHGGQRNGNGTQNSGDKV 207
            QDGYCILYLFQGAVVNTAGKYAGALIGTFFLAFSVEALRHFRLWMRLRRATVVLAHGEKEGEVVTGPPLRAQVLPIFLEALLFGVHMFVAYLIMLLVMLYEWAIFISLLLGLAAGYFTFEMWEAYRVANKKQLPSAIGAIGGGCGCVDEVIHVAAESTIHPGHGGQRNGNGTQNSGDKV
Sbjct:   77 QDGYCILYLFQGAVVNTAGKYAGALIGTFFLAFSVEALRHFRLWMRLRRATVVLAHGEKEGEVVTGPPLRAQVLPIFLEALLFGVHMFVAYLIMLLVMLYEWAIFISLLLGLAAGYFTFEMWEAYRVANKKQLPSAIGAIGGGCGCVDEVIHVAAESTIHPGHGGQRNGNGTQNSGDKV 255          
BLAST of EWM29497.1 vs. NCBI_GenBank
Match: gi|585112050|gb|EWM29496.1| (solute carrier family 31 (copper transporters) member 1 [Nannochloropsis gaditana])

HSP 1 Score: 367.081 bits (941), Expect = 9.762e-127
Identity = 179/179 (100.00%), Postives = 179/179 (100.00%), Query Frame = 0
Query:   29 QDGYCILYLFQGAVVNTAGKYAGALIGTFFLAFSVEALRHFRLWMRLRRATVVLAHGEKEGEVVTGPPLRAQVLPIFLEALLFGVHMFVAYLIMLLVMLYEWAIFISLLLGLAAGYFTFEMWEAYRVANKKQLPSAIGAIGGGCGCVDEVIHVAAESTIHPGHGGQRNGNGTQNSGDKV 207
            QDGYCILYLFQGAVVNTAGKYAGALIGTFFLAFSVEALRHFRLWMRLRRATVVLAHGEKEGEVVTGPPLRAQVLPIFLEALLFGVHMFVAYLIMLLVMLYEWAIFISLLLGLAAGYFTFEMWEAYRVANKKQLPSAIGAIGGGCGCVDEVIHVAAESTIHPGHGGQRNGNGTQNSGDKV
Sbjct:   87 QDGYCILYLFQGAVVNTAGKYAGALIGTFFLAFSVEALRHFRLWMRLRRATVVLAHGEKEGEVVTGPPLRAQVLPIFLEALLFGVHMFVAYLIMLLVMLYEWAIFISLLLGLAAGYFTFEMWEAYRVANKKQLPSAIGAIGGGCGCVDEVIHVAAESTIHPGHGGQRNGNGTQNSGDKV 265          
BLAST of EWM29497.1 vs. NCBI_GenBank
Match: gi|298710761|emb|CBJ32181.1| (conserved unknown protein [Ectocarpus siliculosus])

HSP 1 Score: 80.8777 bits (198), Expect = 1.473e-15
Identity = 55/160 (34.38%), Postives = 76/160 (47.50%), Query Frame = 0
Query:   25 SVPSQDGYCILYLFQGAVVNTAGKYAGALIGTFFLAFSVEALRHFRLWMRLRRATVVLAHGEKEGEVVTGPPLRAQVLPIFLEALLFGVHMFVAYLIMLLVMLYEWAIFISLLLGLAAGYFTFEMWE------AYRVANKKQLPSAIGAIGGGCGCVDEV 178
            S  S    CIL+LF+GA V+T  KYA A +G FF+ F+ E +R+ R  M             K  +V     L+            F V +++AY++MLLVMLYE+ I I ++ GLA G+     W       A R A  K  P  +G+ G  C   D V
Sbjct:   40 SATSASVNCILFLFEGAGVDTKTKYAFAALGAFFMGFANEMIRYGRDRM------------AKTSDVSLASDLKMTAA--------FAVQIYLAYMLMLLVMLYEYVILIMIISGLATGHLLTLRWSAGRRRAALRDAGAKTPPEVMGSSGTPCCNTDTV 179          
BLAST of EWM29497.1 vs. NCBI_GenBank
Match: gi|298704943|emb|CBJ28446.1| (conserved unknown protein [Ectocarpus siliculosus])

HSP 1 Score: 76.2554 bits (186), Expect = 1.115e-13
Identity = 55/157 (35.03%), Postives = 77/157 (49.04%), Query Frame = 0
Query:   18 FRVAFTSSVPSQDGYCILYLFQGAVVNTAGKYAGALIGTFFLAFSVEALRHFRLWMRLRRATVVLAHGEKEGEVVTGPPLRAQVLPIFLEALLFGVHMFVAYLIMLLVMLYEWAIFISLLLGLAAGYF-TFEMWEAYRVANKKQLPSAIGAIGGGCG 173
            F+ A ++SV      CIL+LF+GA V+T  KYA A +G F + F+ E +R+ R  M             K   V  G  ++A           F V MF+AY++MLLVMLYE+ I I ++ GLAAG+  T  +    R A  K        + G  G
Sbjct:   65 FQAATSASV-----RCILFLFEGAGVDTKTKYAFAALGAFCMGFANEMIRYGRDRM------------AKASGVCVGSDVKAT--------FAFAVQMFLAYMLMLLVMLYEYVILIMIISGLAAGHLVTLRLSAGRRRAALKDGAKEASGVAGSSG 196          
BLAST of EWM29497.1 vs. NCBI_GenBank
Match: gi|167520778|ref|XP_001744728.1| (hypothetical protein [Monosiga brevicollis MX1] >gi|163777059|gb|EDQ90677.1| predicted protein [Monosiga brevicollis MX1])

HSP 1 Score: 75.0998 bits (183), Expect = 1.864e-13
Identity = 53/144 (36.81%), Postives = 73/144 (50.69%), Query Frame = 0
Query:   32 YCILYLFQGAVVNTAGKYAGALIGTFFLAFSVEALRHFRLWMRLRRATVVLAHGEKEGEVVTGPPLRAQVLPIFLEALLFGVHMFVAYLIMLLVMLYEWAIFISLLLGLAAGYFTFEMWE-------AYRVANKKQLPSAIGAI 168
            +C ++LF   V++TAGKYA ALIGTF +    E  R    W R R           E +  T P     +L     AL +G+HM  AY +MLLVMLYE   F+ ++LGLA G F     +       AY+  + ++ PSA+  I
Sbjct:   32 FCPIFLFHNVVIDTAGKYAIALIGTFCMGLFNELFR----WYRNR----------LEAQESTRP-----ILQDLCVALSYGIHMLNAYFLMLLVMLYESLFFVMIILGLATGSFVVRQLQRHVRKVGAYQDLDGRK-PSALTPI 155          
BLAST of EWM29497.1 vs. NCBI_GenBank
Match: gi|923129969|ref|XP_013758450.1| (hypothetical protein AMSG_11814 [Thecamonas trahens ATCC 50062] >gi|906555727|gb|KNC48970.1| hypothetical protein AMSG_11814 [Thecamonas trahens ATCC 50062])

HSP 1 Score: 65.0846 bits (157), Expect = 1.266e-9
Identity = 60/186 (32.26%), Postives = 85/186 (45.70%), Query Frame = 0
Query:   18 FRVAFTSSVPSQDGYCILYLFQGAVVNTAGKYAGALIGTFFLAFSVEALRHFR----LWMRLRRATVVLAHGEKEGEVVT--GPPLRAQVLPIFLEALLFGVHMFVAYLIMLLVMLYEWAIFISLLLGLAAGYFTFEMWEAYRVANKKQLPSAIGAIGGGCGCVDEVIHVAAESTIHPGHGGQRNG 197
            F+  +  S   +   CIL+LFQGAVV+T GKYA A IG+F L  ++  L+  R    LW   R ++   +        +   G P+    L +   A LF + M +AY IMLLVMLYE  IF S+++G                      PS+        G   + +H AA S+  P  GG  +G
Sbjct:   14 FQTTYNPSKMIEGNSCILWLFQGAVVDTPGKYALACIGSFSLVLAMVFLQLVRERVSLWASRRSSSSSSSSSSPSSPSLCSGGLPMLGLDLAV---AALFALQMVLAYWIMLLVMLYEAWIFTSIIIGFFVSQLLAIRLRRRWRERTCGCPSSSEQAPLVAGSKMDTVHAAAASS--PCCGGDGHG 194          
BLAST of EWM29497.1 vs. NCBI_GenBank
Match: gi|695408187|ref|XP_009524573.1| (hypothetical protein PHYSODRAFT_313872 [Phytophthora sojae] >gi|348682040|gb|EGZ21856.1| hypothetical protein PHYSODRAFT_313872 [Phytophthora sojae])

HSP 1 Score: 65.0846 bits (157), Expect = 6.614e-9
Identity = 53/167 (31.74%), Postives = 76/167 (45.51%), Query Frame = 0
Query:   20 VAFTSSVPSQDGYCILYLFQGAVVNTAGKYAGALIGTFFLAFSVEALRHFRLWMRLRRATVVLAHGEKEGEVVTGPPLRAQVLPIFLEALLFGVHMFVAYLIMLLVMLYEWAIFISLLLGLAAGYFTFEMWE--------AYRVANKKQLPSAIGAIGGGCGCVDEV 178
            V F     S +G C++ +FQ  V+NTA KYA   IG F LA   E L   R  +R +          K  ++     L      + L A+L+ V M VAY  ML+VM YE  +FI+LL G  AG+  F+  +        A+R  N   +   +G +     C + V
Sbjct:  204 VMFNGFQTSINGSCVMLIFQPWVLNTAVKYAFGFIGCFLLAVMNELLAKARELVRKKLL--------KARKLRPTDKLHKMQCKLVL-AVLYMVQMTVAYFAMLIVMTYETGLFIALLAGFGAGFMLFKNVDLDIMEERGAWRFTNPSTVRIEVGGMTCKTNCGNAV 361          
BLAST of EWM29497.1 vs. NCBI_GenBank
Match: gi|1072238334|gb|OEU23061.1| (copper transporter [Fragilariopsis cylindrus CCMP1102])

HSP 1 Score: 63.5438 bits (153), Expect = 3.061e-8
Identity = 39/141 (27.66%), Postives = 75/141 (53.19%), Query Frame = 0
Query:   29 QDGYCILYLFQGAVVNTAGKYAGALIGTFFLAFSVEALRHFRLWMRLRRATVVLAHGEKEGEVVTGPPLRAQVLPIFLEALLFGVHMFVAYLIMLLVMLYEWAIFISLLLGLAAGYFTFE----MWEAYRVANKKQLPSAI 165
            Q   C++ LF   V+N++ KY  A+I TF  A  +E       +++ RR   V+A+ E            +    +F+ AL +G+ + V YL+ML++M+Y + +F++++LGL +G+  F     +W  +   N  ++ +A+
Sbjct:  647 QSSTCVILLFPSWVLNSSWKYILAVIATFLCALGLEK------FIQQRRK--VMAYME------------SGTYRLFVSALFYGIQLSVGYLLMLIIMIYSFVLFMAVILGLVSGHILFNAKDAIWPIHESLNLDEIDAAL 767          
BLAST of EWM29497.1 vs. NCBI_GenBank
Match: gi|635365373|emb|CCI46245.1| (unnamed protein product [Albugo candida])

HSP 1 Score: 63.1586 bits (152), Expect = 3.605e-8
Identity = 52/145 (35.86%), Postives = 72/145 (49.66%), Query Frame = 0
Query:   16 SIFRVAFTSSVPSQDGYCILYLFQGAVVNTAGKYAGALIGTFFLAFSVEALRHFRLWMRLRRATVVLAHGEKEGEVVTGPPLRAQVLPIFLEALLFGVHMFVAYLIMLLVMLYEWAIFISLLLGLAAGYFTFEMWEAYRVANKKQ 160
            S+    F SSV    G CI   F   V+N+  KYA   IG F +A   E L   R   +LRR   V+  G+K         L  +     + A L+ + M VAYL ML+VM YE  +FI+L+LG  AG+  F+  +   V NK++
Sbjct:  223 SVMLNGFQSSVK---GSCIRLFFYPWVLNSQVKYAFGFIGIFLMAVGNEYLAKVR--EQLRRN--VMRKGKKRN-------LTYRRKWTLVLASLYMIQMVVAYLAMLVVMTYETGLFIALILGFGAGFLLFKNID-LDVVNKQE 352          
The following BLAST results are available for this feature:
BLAST of EWM29497.1 vs. NCBI_GenBank
Analysis Date: 2020-04-07 (BLAST analysis for N. gaditana B-31)
Total hits: 10
Match NameE-valueIdentityDescription
gi|585112051|gb|EWM29497.1|1.475e-150100.00solute carrier family 31 (copper transporters) mem... [more]
gi|553190865|ref|XP_005855280.1|8.841e-127100.00solute carrier family 31 (copper transporters) mem... [more]
gi|585112050|gb|EWM29496.1|9.762e-127100.00solute carrier family 31 (copper transporters) mem... [more]
gi|298710761|emb|CBJ32181.1|1.473e-1534.38conserved unknown protein [Ectocarpus siliculosus][more]
gi|298704943|emb|CBJ28446.1|1.115e-1335.03conserved unknown protein [Ectocarpus siliculosus][more]
gi|167520778|ref|XP_001744728.1|1.864e-1336.81hypothetical protein [Monosiga brevicollis MX1] >g... [more]
gi|923129969|ref|XP_013758450.1|1.266e-932.26hypothetical protein AMSG_11814 [Thecamonas trahen... [more]
gi|695408187|ref|XP_009524573.1|6.614e-931.74hypothetical protein PHYSODRAFT_313872 [Phytophtho... [more]
gi|1072238334|gb|OEU23061.1|3.061e-827.66copper transporter [Fragilariopsis cylindrus CCMP1... [more]
gi|635365373|emb|CCI46245.1|3.605e-835.86unnamed protein product [Albugo candida][more]
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Relationships

This CDS is a part of the following mRNA feature(s):

Feature NameUnique NameSpeciesType
rna1174rna1174Nannochloropsis gaditana (N. gaditana B-31)mRNA


Sequences
Synonyms
Publications