EWM29497.1, cds1173 (CDS) Nannochloropsis gaditana
Overview
Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Analyses
This CDS is derived from or has results from the following analyses
Annotated Terms
The following terms have been associated with this CDS:
Homology
BLAST of EWM29497.1 vs. NCBI_GenBank
Match: gi|585112051|gb|EWM29497.1| (solute carrier family 31 (copper transporters) member 1 [Nannochloropsis gaditana]) HSP 1 Score: 424.861 bits (1091), Expect = 1.475e-150 Identity = 207/207 (100.00%), Postives = 207/207 (100.00%), Query Frame = 0 Query: 1 MKLWDVWSAMKFSPSSIFRVAFTSSVPSQDGYCILYLFQGAVVNTAGKYAGALIGTFFLAFSVEALRHFRLWMRLRRATVVLAHGEKEGEVVTGPPLRAQVLPIFLEALLFGVHMFVAYLIMLLVMLYEWAIFISLLLGLAAGYFTFEMWEAYRVANKKQLPSAIGAIGGGCGCVDEVIHVAAESTIHPGHGGQRNGNGTQNSGDKV 207 MKLWDVWSAMKFSPSSIFRVAFTSSVPSQDGYCILYLFQGAVVNTAGKYAGALIGTFFLAFSVEALRHFRLWMRLRRATVVLAHGEKEGEVVTGPPLRAQVLPIFLEALLFGVHMFVAYLIMLLVMLYEWAIFISLLLGLAAGYFTFEMWEAYRVANKKQLPSAIGAIGGGCGCVDEVIHVAAESTIHPGHGGQRNGNGTQNSGDKV Sbjct: 1 MKLWDVWSAMKFSPSSIFRVAFTSSVPSQDGYCILYLFQGAVVNTAGKYAGALIGTFFLAFSVEALRHFRLWMRLRRATVVLAHGEKEGEVVTGPPLRAQVLPIFLEALLFGVHMFVAYLIMLLVMLYEWAIFISLLLGLAAGYFTFEMWEAYRVANKKQLPSAIGAIGGGCGCVDEVIHVAAESTIHPGHGGQRNGNGTQNSGDKV 207
BLAST of EWM29497.1 vs. NCBI_GenBank
Match: gi|553190865|ref|XP_005855280.1| (solute carrier family 31 (copper transporters) member 1 [Nannochloropsis gaditana CCMP526] >gi|422293781|gb|EKU21081.1| solute carrier family 31 (copper transporters) member 1 [Nannochloropsis gaditana CCMP526]) HSP 1 Score: 366.696 bits (940), Expect = 8.841e-127 Identity = 179/179 (100.00%), Postives = 179/179 (100.00%), Query Frame = 0 Query: 29 QDGYCILYLFQGAVVNTAGKYAGALIGTFFLAFSVEALRHFRLWMRLRRATVVLAHGEKEGEVVTGPPLRAQVLPIFLEALLFGVHMFVAYLIMLLVMLYEWAIFISLLLGLAAGYFTFEMWEAYRVANKKQLPSAIGAIGGGCGCVDEVIHVAAESTIHPGHGGQRNGNGTQNSGDKV 207 QDGYCILYLFQGAVVNTAGKYAGALIGTFFLAFSVEALRHFRLWMRLRRATVVLAHGEKEGEVVTGPPLRAQVLPIFLEALLFGVHMFVAYLIMLLVMLYEWAIFISLLLGLAAGYFTFEMWEAYRVANKKQLPSAIGAIGGGCGCVDEVIHVAAESTIHPGHGGQRNGNGTQNSGDKV Sbjct: 77 QDGYCILYLFQGAVVNTAGKYAGALIGTFFLAFSVEALRHFRLWMRLRRATVVLAHGEKEGEVVTGPPLRAQVLPIFLEALLFGVHMFVAYLIMLLVMLYEWAIFISLLLGLAAGYFTFEMWEAYRVANKKQLPSAIGAIGGGCGCVDEVIHVAAESTIHPGHGGQRNGNGTQNSGDKV 255
BLAST of EWM29497.1 vs. NCBI_GenBank
Match: gi|585112050|gb|EWM29496.1| (solute carrier family 31 (copper transporters) member 1 [Nannochloropsis gaditana]) HSP 1 Score: 367.081 bits (941), Expect = 9.762e-127 Identity = 179/179 (100.00%), Postives = 179/179 (100.00%), Query Frame = 0 Query: 29 QDGYCILYLFQGAVVNTAGKYAGALIGTFFLAFSVEALRHFRLWMRLRRATVVLAHGEKEGEVVTGPPLRAQVLPIFLEALLFGVHMFVAYLIMLLVMLYEWAIFISLLLGLAAGYFTFEMWEAYRVANKKQLPSAIGAIGGGCGCVDEVIHVAAESTIHPGHGGQRNGNGTQNSGDKV 207 QDGYCILYLFQGAVVNTAGKYAGALIGTFFLAFSVEALRHFRLWMRLRRATVVLAHGEKEGEVVTGPPLRAQVLPIFLEALLFGVHMFVAYLIMLLVMLYEWAIFISLLLGLAAGYFTFEMWEAYRVANKKQLPSAIGAIGGGCGCVDEVIHVAAESTIHPGHGGQRNGNGTQNSGDKV Sbjct: 87 QDGYCILYLFQGAVVNTAGKYAGALIGTFFLAFSVEALRHFRLWMRLRRATVVLAHGEKEGEVVTGPPLRAQVLPIFLEALLFGVHMFVAYLIMLLVMLYEWAIFISLLLGLAAGYFTFEMWEAYRVANKKQLPSAIGAIGGGCGCVDEVIHVAAESTIHPGHGGQRNGNGTQNSGDKV 265
BLAST of EWM29497.1 vs. NCBI_GenBank
Match: gi|298710761|emb|CBJ32181.1| (conserved unknown protein [Ectocarpus siliculosus]) HSP 1 Score: 80.8777 bits (198), Expect = 1.473e-15 Identity = 55/160 (34.38%), Postives = 76/160 (47.50%), Query Frame = 0 Query: 25 SVPSQDGYCILYLFQGAVVNTAGKYAGALIGTFFLAFSVEALRHFRLWMRLRRATVVLAHGEKEGEVVTGPPLRAQVLPIFLEALLFGVHMFVAYLIMLLVMLYEWAIFISLLLGLAAGYFTFEMWE------AYRVANKKQLPSAIGAIGGGCGCVDEV 178 S S CIL+LF+GA V+T KYA A +G FF+ F+ E +R+ R M K +V L+ F V +++AY++MLLVMLYE+ I I ++ GLA G+ W A R A K P +G+ G C D V Sbjct: 40 SATSASVNCILFLFEGAGVDTKTKYAFAALGAFFMGFANEMIRYGRDRM------------AKTSDVSLASDLKMTAA--------FAVQIYLAYMLMLLVMLYEYVILIMIISGLATGHLLTLRWSAGRRRAALRDAGAKTPPEVMGSSGTPCCNTDTV 179
BLAST of EWM29497.1 vs. NCBI_GenBank
Match: gi|298704943|emb|CBJ28446.1| (conserved unknown protein [Ectocarpus siliculosus]) HSP 1 Score: 76.2554 bits (186), Expect = 1.115e-13 Identity = 55/157 (35.03%), Postives = 77/157 (49.04%), Query Frame = 0 Query: 18 FRVAFTSSVPSQDGYCILYLFQGAVVNTAGKYAGALIGTFFLAFSVEALRHFRLWMRLRRATVVLAHGEKEGEVVTGPPLRAQVLPIFLEALLFGVHMFVAYLIMLLVMLYEWAIFISLLLGLAAGYF-TFEMWEAYRVANKKQLPSAIGAIGGGCG 173 F+ A ++SV CIL+LF+GA V+T KYA A +G F + F+ E +R+ R M K V G ++A F V MF+AY++MLLVMLYE+ I I ++ GLAAG+ T + R A K + G G Sbjct: 65 FQAATSASV-----RCILFLFEGAGVDTKTKYAFAALGAFCMGFANEMIRYGRDRM------------AKASGVCVGSDVKAT--------FAFAVQMFLAYMLMLLVMLYEYVILIMIISGLAAGHLVTLRLSAGRRRAALKDGAKEASGVAGSSG 196
BLAST of EWM29497.1 vs. NCBI_GenBank
Match: gi|167520778|ref|XP_001744728.1| (hypothetical protein [Monosiga brevicollis MX1] >gi|163777059|gb|EDQ90677.1| predicted protein [Monosiga brevicollis MX1]) HSP 1 Score: 75.0998 bits (183), Expect = 1.864e-13 Identity = 53/144 (36.81%), Postives = 73/144 (50.69%), Query Frame = 0 Query: 32 YCILYLFQGAVVNTAGKYAGALIGTFFLAFSVEALRHFRLWMRLRRATVVLAHGEKEGEVVTGPPLRAQVLPIFLEALLFGVHMFVAYLIMLLVMLYEWAIFISLLLGLAAGYFTFEMWE-------AYRVANKKQLPSAIGAI 168 +C ++LF V++TAGKYA ALIGTF + E R W R R E + T P +L AL +G+HM AY +MLLVMLYE F+ ++LGLA G F + AY+ + ++ PSA+ I Sbjct: 32 FCPIFLFHNVVIDTAGKYAIALIGTFCMGLFNELFR----WYRNR----------LEAQESTRP-----ILQDLCVALSYGIHMLNAYFLMLLVMLYESLFFVMIILGLATGSFVVRQLQRHVRKVGAYQDLDGRK-PSALTPI 155
BLAST of EWM29497.1 vs. NCBI_GenBank
Match: gi|923129969|ref|XP_013758450.1| (hypothetical protein AMSG_11814 [Thecamonas trahens ATCC 50062] >gi|906555727|gb|KNC48970.1| hypothetical protein AMSG_11814 [Thecamonas trahens ATCC 50062]) HSP 1 Score: 65.0846 bits (157), Expect = 1.266e-9 Identity = 60/186 (32.26%), Postives = 85/186 (45.70%), Query Frame = 0 Query: 18 FRVAFTSSVPSQDGYCILYLFQGAVVNTAGKYAGALIGTFFLAFSVEALRHFR----LWMRLRRATVVLAHGEKEGEVVT--GPPLRAQVLPIFLEALLFGVHMFVAYLIMLLVMLYEWAIFISLLLGLAAGYFTFEMWEAYRVANKKQLPSAIGAIGGGCGCVDEVIHVAAESTIHPGHGGQRNG 197 F+ + S + CIL+LFQGAVV+T GKYA A IG+F L ++ L+ R LW R ++ + + G P+ L + A LF + M +AY IMLLVMLYE IF S+++G PS+ G + +H AA S+ P GG +G Sbjct: 14 FQTTYNPSKMIEGNSCILWLFQGAVVDTPGKYALACIGSFSLVLAMVFLQLVRERVSLWASRRSSSSSSSSSSPSSPSLCSGGLPMLGLDLAV---AALFALQMVLAYWIMLLVMLYEAWIFTSIIIGFFVSQLLAIRLRRRWRERTCGCPSSSEQAPLVAGSKMDTVHAAAASS--PCCGGDGHG 194
BLAST of EWM29497.1 vs. NCBI_GenBank
Match: gi|695408187|ref|XP_009524573.1| (hypothetical protein PHYSODRAFT_313872 [Phytophthora sojae] >gi|348682040|gb|EGZ21856.1| hypothetical protein PHYSODRAFT_313872 [Phytophthora sojae]) HSP 1 Score: 65.0846 bits (157), Expect = 6.614e-9 Identity = 53/167 (31.74%), Postives = 76/167 (45.51%), Query Frame = 0 Query: 20 VAFTSSVPSQDGYCILYLFQGAVVNTAGKYAGALIGTFFLAFSVEALRHFRLWMRLRRATVVLAHGEKEGEVVTGPPLRAQVLPIFLEALLFGVHMFVAYLIMLLVMLYEWAIFISLLLGLAAGYFTFEMWE--------AYRVANKKQLPSAIGAIGGGCGCVDEV 178 V F S +G C++ +FQ V+NTA KYA IG F LA E L R +R + K ++ L + L A+L+ V M VAY ML+VM YE +FI+LL G AG+ F+ + A+R N + +G + C + V Sbjct: 204 VMFNGFQTSINGSCVMLIFQPWVLNTAVKYAFGFIGCFLLAVMNELLAKARELVRKKLL--------KARKLRPTDKLHKMQCKLVL-AVLYMVQMTVAYFAMLIVMTYETGLFIALLAGFGAGFMLFKNVDLDIMEERGAWRFTNPSTVRIEVGGMTCKTNCGNAV 361
BLAST of EWM29497.1 vs. NCBI_GenBank
Match: gi|1072238334|gb|OEU23061.1| (copper transporter [Fragilariopsis cylindrus CCMP1102]) HSP 1 Score: 63.5438 bits (153), Expect = 3.061e-8 Identity = 39/141 (27.66%), Postives = 75/141 (53.19%), Query Frame = 0 Query: 29 QDGYCILYLFQGAVVNTAGKYAGALIGTFFLAFSVEALRHFRLWMRLRRATVVLAHGEKEGEVVTGPPLRAQVLPIFLEALLFGVHMFVAYLIMLLVMLYEWAIFISLLLGLAAGYFTFE----MWEAYRVANKKQLPSAI 165 Q C++ LF V+N++ KY A+I TF A +E +++ RR V+A+ E + +F+ AL +G+ + V YL+ML++M+Y + +F++++LGL +G+ F +W + N ++ +A+ Sbjct: 647 QSSTCVILLFPSWVLNSSWKYILAVIATFLCALGLEK------FIQQRRK--VMAYME------------SGTYRLFVSALFYGIQLSVGYLLMLIIMIYSFVLFMAVILGLVSGHILFNAKDAIWPIHESLNLDEIDAAL 767
BLAST of EWM29497.1 vs. NCBI_GenBank
Match: gi|635365373|emb|CCI46245.1| (unnamed protein product [Albugo candida]) HSP 1 Score: 63.1586 bits (152), Expect = 3.605e-8 Identity = 52/145 (35.86%), Postives = 72/145 (49.66%), Query Frame = 0 Query: 16 SIFRVAFTSSVPSQDGYCILYLFQGAVVNTAGKYAGALIGTFFLAFSVEALRHFRLWMRLRRATVVLAHGEKEGEVVTGPPLRAQVLPIFLEALLFGVHMFVAYLIMLLVMLYEWAIFISLLLGLAAGYFTFEMWEAYRVANKKQ 160 S+ F SSV G CI F V+N+ KYA IG F +A E L R +LRR V+ G+K L + + A L+ + M VAYL ML+VM YE +FI+L+LG AG+ F+ + V NK++ Sbjct: 223 SVMLNGFQSSVK---GSCIRLFFYPWVLNSQVKYAFGFIGIFLMAVGNEYLAKVR--EQLRRN--VMRKGKKRN-------LTYRRKWTLVLASLYMIQMVVAYLAMLVVMTYETGLFIALILGFGAGFLLFKNID-LDVVNKQE 352 The following BLAST results are available for this feature:
BLAST of EWM29497.1 vs. NCBI_GenBank
Analysis Date: 2020-04-07 (BLAST analysis for N. gaditana B-31) Total hits: 10
Relationships
This CDS is a part of the following mRNA feature(s):
Sequences
Synonyms
Publications
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