rna1173, rna1173 (mRNA) Nannochloropsis gaditana

Overview
Namerna1173
Unique Namerna1173
TypemRNA
OrganismNannochloropsis gaditana (N. gaditana B-31)
Sequence length1452
Alignment locationCM002456.1:1398949..1399933 +

Link to JBrowse

Properties
Property NameValue
Producthypothetical protein
Orig transcript idgnl|cribi|Naga_100287g9.6249.mrna
Orig protein idgnl|cribi|Naga_100287g9.6249
GbkeymRNA
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
CM002456.1supercontigCM002456.1:1398949..1399933 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
Naga_100287g9gene1130Nannochloropsis gaditana (N. gaditana B-31)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
rna1173rna1173-proteinNannochloropsis gaditana (N. gaditana B-31)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
EWM29493.1cds1172Nannochloropsis gaditana (N. gaditana B-31)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>rna1173 ID=rna1173|Name=rna1173|organism=Nannochloropsis gaditana|type=mRNA|length=1452bp
ATGATTGGTGCTTCAATATGGCCTAGAGCTCGTGTAGGACGGAGTTCTAG
CAGCGCTGTTCGTCCACTCCTCCCCTCTTTCGCGTTTTCTGGCGGATGGA
TGCATGTTCCCGTTACGATAGGAATGCCTACAGCCCCAACTATCCACTGC
TACCATGCGACGATCCCACTCTTCGGCCGCAAAGGCGGTGCCTCTGCTCT
CAGCCCAAAGAGGAATACGTCTCCCTCCACGCAAAGATGGATGCGCCGAG
GAGCTCCCCCATCGAGCAGCACTGGAGGACGTGCTCGTGAAGGACAATTA
CGAAGACCTTTTCTGCATCCATCACAGCGCACCACGCTGCCCGCGGTAAA
CGATGCGTCCGAATTGATCGACCCGGATTTTGAGCTGATGATGAGTGAGC
TCATGCGTCCAATACCCTCCACGGGCGGAAATGCGTCGTTGCAAGATGGA
GGGAAAGAAGGAAGAGAGGGGGCAATAAGCAATGACGAAGTTCTCTCCAA
GGAAGAGGCCCTTCGGCGCCTGGACCTAGACAGAAAATATGCCGACATGA
TGAGGCGGGAGGCGCGGGGCAGCGTGGCGGTGGGGCCCTCTGGCTCGCCT
ACAGCGCTTCCTTCTCCCTCCCCTTCCTCCCTGGATGCCAACGTTCTCCC
TTCTTCCTCCCCTCCTGCTTTCCAATGCGCCATTGCCGAGTACAACCGTC
TCCTGCGGGCTTACGGGGTGCAAAATCGCCTCCCCGAGGCCCAGGCACTC
CTTCGATCCTTGCTCTCGCGTCAAGCCCCTGTTTCTTCCCAAACCCTCAC
CGCCTACGTCTACGCGTGCTCCGCCTGCCAACCCCCGGCTCCCGAGGCCG
CAGAATCCGAGATGCAGGCCTGGGAGAACAACGGCCTTCCCTCTCCGGAC
GCCTGGACGTGGGCCACGCTGGTCAGTGCCTACGTTCGCGCCGGTCGACG
GGAAGAGGCTTTGGGAACTTTCCAACGGATGAAACTCGCCGGGCACCCGG
AGAACCTGGCGGCGTGCACGAGCGTATTGCAAGCCTTGGGTCAAGGGAGG
GGGAGGAAAGATCGGGAGGCCATGCTGGATTTCTGGATTGATATGCGGGT
GGCGGGGGTGGAGCCCGACGCCGTCGCCTACACAGTGTTGCTGCAAGCCA
CCTGCGTGTCTACGGGCGACCTGGAGCGAGGCCTGTCGTATTTGGACGAG
ATGGAGCAACTCTCGGTGCTGCCGACCTTGCATGTTTTCAACACGCTTCT
TTTCACGGCGGCGCGAGCTCCCTTGTGGTTTCCAGGCTACAGTGCTCTGC
TCTACGAGCTGCTAGCGCGCTTGGAATCGAGCGGATGGGCCCCCGACGCC
GTGACGTATCAAGGCCTGGTCCGCATCTGTGCACAGGCCGGGAACCCGCT
CTTGGCGGAGCGGTACATTGAGCGGATGCAGGAGGAAGGTCGGCAGGAGT
GA
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protein sequence of rna1173

>rna1173-protein ID=rna1173-protein|Name=rna1173|organism=Nannochloropsis gaditana|type=polypeptide|length=178bp
GRQEEGDAGKTSKEGTVALDKVRADQSTYYYLVRMLVRAKRVLPAFELVK
AMLRPAPSSTPPDHAASLPPSLPPSLPPSLPPPNAETLGVLMEALGRRGE
VEPALYLLEVMVEDLKYTPREWFLTPLRRIMISQGLSHPLMPPDPRAWLR
EGLQIRRRVDKGGRSLRQLIKSSMRAGQ
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mRNA from alignment at CM002456.1:1398949..1399933+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>rna1173 ID=rna1173|Name=rna1173|organism=Nannochloropsis gaditana|type=mRNA|length=985bp|location=Sequence derived from alignment at CM002456.1:1398949..1399933+ (Nannochloropsis gaditana)
ggaaggcaggaggagggggacgcagGGAAGACGTCAAAAGAGGGGACGGT
CGCACTGGATAAAGTTCGAGCGGATCAGTCCACATATTATTATTTAGTTC
GTATGCTGGTAAGGGCAAAACGCGTGCTGCCCGCTTTCGAGTTGGTCAAG
GCCATGCTCCGGCCCGCTCCATCCTCGACTCCTCCTGATCACGCGGctag
cctccctccctccctccctccctcccttcctccctcccttcctccaccga
aCGCGGAGACTTTGGGGGTGCTGATGGAGGCCTtaggcaggcggggggag
gtagagccAGCGTTGTATCTTTTGGaggtgatggtggaggacttGAAATA
CACTCCGCGGGAATGGTTTTTAACCCCCTTGCGTCGCATCATGATAAGCC
AGGGGTTGAGCCATCCGCTGATGCCGCCGGATCCCAGGGCCTGGTTGCGT
GAGGGGCTGCAGATACGACGTCGGGtcgacaagggaggacggtCGCTGAG
ACAATTGATCAAAAGTAGCATGCGGGCGGGGCAATAGAGTGCcagcaagg
agagaggacaCAAAGTCTCTCTTCTTTGTTTGGATGCTCTAATGGCGGGG
GTTTTCGGATCATGTGGGGTATTTTTGTAAACATTGCTTTATAGTAGACG
AAAATCCGCCTTTACAAAGAATTCCTAAGAGTGCAGATAAAGTTTGGCAA
CGCAACGTAAAAGAAGAAGCAAAGCGTAGAACGATAAAACTCTTTTCGTG
TCATGGCCGACTGAATCACGTCAGAAGGCTTTTGATTGGTCTAGAATTGA
TGTGAAATAATGCCTTCTACAAAAGATTCAATGTTGGGTTTCAAAGCCCG
AGGAGAGGAGTGTTAGGGAAACCACTACAATCGGAGAGATTGGATTTGAA
GTCATTTTGGAAAGCGTTTAAAGATATGCCAGAAGGAACTATGAAATATC
TATTATGATACCAAAGAAACATGCATCCTTTTTGG
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Coding sequence (CDS) from alignment at CM002456.1:1398949..1399933+

>rna1173 ID=rna1173|Name=rna1173|organism=Nannochloropsis gaditana|type=CDS|length=537bp|location=Sequence derived from alignment at CM002456.1:1398949..1399933+ (Nannochloropsis gaditana)
ggaaggcaggaggagggggacgcagGGAAGACGTCAAAAGAGGGGACGGT
CGCACTGGATAAAGTTCGAGCGGATCAGTCCACATATTATTATTTAGTTC
GTATGCTGGTAAGGGCAAAACGCGTGCTGCCCGCTTTCGAGTTGGTCAAG
GCCATGCTCCGGCCCGCTCCATCCTCGACTCCTCCTGATCACGCGGctag
cctccctccctccctccctccctcccttcctccctcccttcctccaccga
aCGCGGAGACTTTGGGGGTGCTGATGGAGGCCTtaggcaggcggggggag
gtagagccAGCGTTGTATCTTTTGGaggtgatggtggaggacttGAAATA
CACTCCGCGGGAATGGTTTTTAACCCCCTTGCGTCGCATCATGATAAGCC
AGGGGTTGAGCCATCCGCTGATGCCGCCGGATCCCAGGGCCTGGTTGCGT
GAGGGGCTGCAGATACGACGTCGGGtcgacaagggaggacggtCGCTGAG
ACAATTGATCAAAAGTAGCATGCGGGCGGGGCAATAG
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Synonyms
Publications