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Properties
| Property Name | Value |
|---|
| Product | pentatricopeptide repeat-containing protein |
| Orig transcript id | gnl|cribi|Naga_100998g1.7602.mrna |
| Orig protein id | gnl|cribi|Naga_100998g1.7602 |
| Gbkey | mRNA |
Alignments
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| CM002456.1 | supercontig | CM002456.1:1396409..1398155 + |
Analyses
This mRNA is derived from or has results from the following analyses
Relationships
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
mRNA sequence >rna1172 ID=rna1172|Name=rna1172|organism=Nannochloropsis gaditana|type=mRNA|length=510bp
ATGGCACCAATGGGCGTAGAGAAGGATAAAAAGGATGGAGTGGGGGAAGA
TGCCCCAAAAAATGGAGATAACAAGAAGCCCGAGGAGGAAGCGACGACAA
TCGTTACGACTGCAAATCTTGCCGCTGATGAGCTTGAAGTCATCGTCCAT
CCTCTCGTTCTCCTATCCACTGTCGATCACTACAATCGCGTGGCCAAGGA
CACAAGGAAGCGCGTCGTGGGAGTCCTGTTGGGCACCACATGGAGAGGAC
GCATCGACATCACAAACTCCTTTGCAGTTCCCTTCGAAGAGGACTTAAAG
AACCCACTTGTTTGGTATCTGGACCACAACTATCTCGAAAGCATGTTTTA
CATGTTCAAGAAGATTAACGCCAAAGAGCGTATCGTCGGGTTCTACAGCA
CTGGGCCCAAAATCAAAGAAAACGATCTCCAGATCGACGAAGTCTTTCGG
CGGTTCTCCTCCGCCCCTGTGTTTGTCATCATCGACGTGCGGAGGAGGTG
GAGGGGGTGA back to topprotein sequence of rna1172 >rna1172-protein ID=rna1172-protein|Name=rna1172|organism=Nannochloropsis gaditana|type=polypeptide|length=483bp
MIGASIWPRARVGRSSSSAVRPLLPSFAFSGGWMHVPVTIGMPTAPTIHC
YHATIPLFGRKGGASALSPKRNTSPSTQRWMRRGAPPSSSTGGRAREGQL
RRPFLHPSQRTTLPAVNDASELIDPDFELMMSELMRPIPSTGGNASLQDG
GKEGREGAISNDEVLSKEEALRRLDLDRKYADMMRREARGSVAVGPSGSP
TALPSPSPSSLDANVLPSSSPPAFQCAIAEYNRLLRAYGVQNRLPEAQAL
LRSLLSRQAPVSSQTLTAYVYACSACQPPAPEAAESEMQAWENNGLPSPD
AWTWATLVSAYVRAGRREEALGTFQRMKLAGHPENLAACTSVLQALGQGR
GRKDREAMLDFWIDMRVAGVEPDAVAYTVLLQATCVSTGDLERGLSYLDE
MEQLSVLPTLHVFNTLLFTAARAPLWFPGYSALLYELLARLESSGWAPDA
VTYQGLVRICAQAGNPLLAERYIERMQEEGRQE back to topmRNA from alignment at CM002456.1:1396409..1398155+ Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below. >rna1172 ID=rna1172|Name=rna1172|organism=Nannochloropsis gaditana|type=mRNA|length=1747bp|location=Sequence derived from alignment at CM002456.1:1396409..1398155+ (Nannochloropsis gaditana)
atGATTGGTGCTTCAATATGGCCTAGAGCTCGTGTAGGACGGAGTTCTAG
CAGCGCTGTTCgtccactcctcccctctttcgcgTTTTCTGGCGGATGGA
TGCATGTTCCCGTTACGATAGGAATGGTACGTAGGCTTTTCCTGCATTTT
ACGCGCATTATACCGTGCAGGTGGAGACATGTATATCTATTTATCCGCAT
ATGGAAAGACACCTCGCCTCCACTTTCGAAACAATTCTTATCGATGACCC
TTTTATAGTTGCGTGGATTTCGTGGTGTGTAGAGCAACGGTTTCTGGTAT
GAGAAGACCTTCATGGATGTCATCATCGCTCACAAACacacctttctcct
cacccATCTGCAGCCTACAGCCCCAACTATCCACTGCTACCATGCGACGA
TCCCACTCTTCGGCCGCAAAGGCGGTGCCTCTGCTCTCAGCCCAAAGAGG
AAtacgtctccctccacgcaaAGATGGATGCGCCGAGGAGCTCCCCCATC
GAGCAGCACTGGAGGACGTGCTCGTGAAGGACAATTACGAAGACCTTTTC
TGCATCCATCACAGCGCACCACGCTGCCCGCGGTAAACGATGCGTCCGAA
TTGATCGACCCGGATTTTGAGCTGATGATGAGTGAGCTCATGCGTCCAAT
ACCCTCCACGGGCGGAAATGCGTCGTTGcaagatggagggaaagaaggaa
gagagggggcaATAAGCAATGACGAAGTTCTCTCCAAGGAAGAGGCCCTT
CGGCGCCTGGACCTAGACAGAAAATATGCCGACATgatgaggcgggaggc
gcgGGGCAGCGTGGCGGTGGGGCCCTCTGGCTCGCCTACagcgcttcctt
ctccctccccttcctccctggatGCCAAcgttctcccttcttcctcccct
cctgctttcCAATGCGCCATTGCCGAGTACAACCGTCTCCTGCGGGCTTA
CGGGGTGCAAAATcgcctccccgaggcccaGGCACTCCTTCGATCCTTGC
TCTCGCGTCAAGCCCCTGTTTCTTCCCAAACCCTCACCGCCTACGTCTAC
GCGTGCTCCGCCTGCCAACCCCCGGCTCCCGAGGCCGCAGAATCCGAGAT
GCAGGCCTGGGAGAACAacggccttccctctccggACGCCTGGACGTGGG
CCACGCTGGTCAGTGCCTACGTTCGCGCCGGTCGACGGGAAGAGGCTTTG
GGAACTTTCCAACGGATGAAACTCGCCGGGCACCCGGAGAACCTGGCGGC
GTGCACGAGCGTATTGCAAGCCTTgggtcaagggagggggaggaaagatc
gGGAGGCCATGCTGGATTTCTGGATTGATATGCgggtggcgggggtggag
ccCGACGCCGTCGCCTACACAGTGTTGCTGCAAGCCACCTGCGTGTCTAC
GGGCGACCTGGAGCGAGGCCTGTCGTATTTGGACGAGATGGAGCAACTCT
CGGTGCTGCCGACCTTGCATGTTTTCAACACGCTTCTTTTCACGGCGGCG
CGAGCTCCCTTGTGGTTTCCAGGCTACAGTGCTCTGCTCTACGAGCTGCT
AGCGCGCTTGGAATCGAGCGGATGGGCCCCCGACGCCGTGACGTATCAAG
GCCTGGTCCGCATCTGTGCACAGGCCGGGAACCCGCTCTTGGCGGAGCGG
TACATTGAGcggatgcaggaggaagggtggggggtAACAAGGGGAGTGTA
CCACGAATACCTCCGGGCATTGGGGAGAGGGCAGTCGGCAGGAgtga back to topCoding sequence (CDS) from alignment at CM002456.1:1396409..1398155+ >rna1172 ID=rna1172|Name=rna1172|organism=Nannochloropsis gaditana|type=CDS|length=4356bp|location=Sequence derived from alignment at CM002456.1:1396409..1398155+ (Nannochloropsis gaditana)
atGATTGGTGCTTCAATATGGCCTAGAGCTCGTGTAGGACGGAGTTCTAG
CAGCGCTGTTCgtccactcctcccctctttcgcgTTTTCTGGCGGATGGA
TGCATGTTCCCGTTACGATAGGAATGCCTACAGCCCCAACTATCCACTGC
TACCATGCGACGATCCCACTCTTCGGCCGCAAAGGCGGTGCCTCTGCTCT
CAGCCCAAAGAGGAAtacgtctccctccacgcaaAGATGGATGCGCCGAG
GAGCTCCCCCATCGAGCAGCACTGGAGGACGTGCTCGTGAAGGACAATTA
CGAAGACCTTTTCTGCATCCATCACAGCGCACCACGCTGCCCGCGGTAAA
CGATGCGTCCGAATTGATCGACCCGGATTTTGAGCTGATGATGAGTGAGC
TCATGCGTCCAATACCCTCCACGGGCGGAAATGCGTCGTTGcaagatgga
gggaaagaaggaagagagggggcaATAAGCAATGACGAAGTTCTCTCCAA
GGAAGAGGCCCTTCGGCGCCTGGACCTAGACAGAAAATATGCCGACATga
tgaggcgggaggcgcgGGGCAGCGTGGCGGTGGGGCCCTCTGGCTCGCCT
ACagcgcttccttctccctccccttcctccctggatGCCAAcgttctccc
ttcttcctcccctcctgctttcCAATGCGCCATTGCCGAGTACAACCGTC
TCCTGCGGGCTTACGGGGTGCAAAATcgcctccccgaggcccaGGCACTC
CTTCGATCCTTGCTCTCGCGTCAAGCCCCTGTTTCTTCCCAAACCCTCAC
CGCCTACGTCTACGCGTGCTCCGCCTGCCAACCCCCGGCTCCCGAGGCCG
CAGAATCCGAGATGCAGGCCTGGGAGAACAacggccttccctctccggAC
GCCTGGACGTGGGCCACGCTGGTCAGTGCCTACGTTCGCGCCGGTCGACG
GGAAGAGGCTTTGGGAACTTTCCAACGGATGAAACTCGCCGGGCACCCGG
AGAACCTGGCGGCGTGCACGAGCGTATTGCAAGCCTTgggtcaagggagg
gggaggaaagatcgGGAGGCCATGCTGGATTTCTGGATTGATATGCgggt
ggcgggggtggagccCGACGCCGTCGCCTACACAGTGTTGCTGCAAGCCA
CCTGCGTGTCTACGGGCGACCTGGAGCGAGGCCTGTCGTATTTGGACGAG
ATGGAGCAACTCTCGGTGCTGCCGACCTTGCATGTTTTCAACACGCTTCT
TTTCACGGCGGCGCGAGCTCCCTTGTGGTTTCCAGGCTACAGTGCTCTGC
TCTACGAGCTGCTAGCGCGCTTGGAATCGAGCGGATGGGCCCCCGACGCC
GTGACGTATCAAGGCCTGGTCCGCATCTGTGCACAGGCCGGGAACCCGCT
CTTGGCGGAGCGGTACATTGAGcggatgcaggaggaaggTCGGCAGGAgt
gaatGATTGGTGCTTCAATATGGCCTAGAGCTCGTGTAGGACGGAGTTCT
AGCAGCGCTGTTCgtccactcctcccctctttcgcgTTTTCTGGCGGATG
GATGCATGTTCCCGTTACGATAGGAATGCCTACAGCCCCAACTATCCACT
GCTACCATGCGACGATCCCACTCTTCGGCCGCAAAGGCGGTGCCTCTGCT
CTCAGCCCAAAGAGGAAtacgtctccctccacgcaaAGATGGATGCGCCG
AGGAGCTCCCCCATCGAGCAGCACTGGAGGACGTGCTCGTGAAGGACAAT
TACGAAGACCTTTTCTGCATCCATCACAGCGCACCACGCTGCCCGCGGTA
AACGATGCGTCCGAATTGATCGACCCGGATTTTGAGCTGATGATGAGTGA
GCTCATGCGTCCAATACCCTCCACGGGCGGAAATGCGTCGTTGcaagatg
gagggaaagaaggaagagagggggcaATAAGCAATGACGAAGTTCTCTCC
AAGGAAGAGGCCCTTCGGCGCCTGGACCTAGACAGAAAATATGCCGACAT
gatgaggcgggaggcgcgGGGCAGCGTGGCGGTGGGGCCCTCTGGCTCGC
CTACagcgcttccttctccctccccttcctccctggatGCCAAcgttctc
ccttcttcctcccctcctgctttcCAATGCGCCATTGCCGAGTACAACCG
TCTCCTGCGGGCTTACGGGGTGCAAAATcgcctccccgaggcccaGGCAC
TCCTTCGATCCTTGCTCTCGCGTCAAGCCCCTGTTTCTTCCCAAACCCTC
ACCGCCTACGTCTACGCGTGCTCCGCCTGCCAACCCCCGGCTCCCGAGGC
CGCAGAATCCGAGATGCAGGCCTGGGAGAACAacggccttccctctccgg
ACGCCTGGACGTGGGCCACGCTGGTCAGTGCCTACGTTCGCGCCGGTCGA
CGGGAAGAGGCTTTGGGAACTTTCCAACGGATGAAACTCGCCGGGCACCC
GGAGAACCTGGCGGCGTGCACGAGCGTATTGCAAGCCTTgggtcaaggga
gggggaggaaagatcgGGAGGCCATGCTGGATTTCTGGATTGATATGCgg
gtggcgggggtggagccCGACGCCGTCGCCTACACAGTGTTGCTGCAAGC
CACCTGCGTGTCTACGGGCGACCTGGAGCGAGGCCTGTCGTATTTGGACG
AGATGGAGCAACTCTCGGTGCTGCCGACCTTGCATGTTTTCAACACGCTT
CTTTTCACGGCGGCGCGAGCTCCCTTGTGGTTTCCAGGCTACAGTGCTCT
GCTCTACGAGCTGCTAGCGCGCTTGGAATCGAGCGGATGGGCCCCCGACG
CCGTGACGTATCAAGGCCTGGTCCGCATCTGTGCACAGGCCGGGAACCCG
CTCTTGGCGGAGCGGTACATTGAGcggatgcaggaggaaggTCGGCAGGA
gtgaatGATTGGTGCTTCAATATGGCCTAGAGCTCGTGTAGGACGGAGTT
CTAGCAGCGCTGTTCgtccactcctcccctctttcgcgTTTTCTGGCGGA
TGGATGCATGTTCCCGTTACGATAGGAATGCCTACAGCCCCAACTATCCA
CTGCTACCATGCGACGATCCCACTCTTCGGCCGCAAAGGCGGTGCCTCTG
CTCTCAGCCCAAAGAGGAAtacgtctccctccacgcaaAGATGGATGCGC
CGAGGAGCTCCCCCATCGAGCAGCACTGGAGGACGTGCTCGTGAAGGACA
ATTACGAAGACCTTTTCTGCATCCATCACAGCGCACCACGCTGCCCGCGG
TAAACGATGCGTCCGAATTGATCGACCCGGATTTTGAGCTGATGATGAGT
GAGCTCATGCGTCCAATACCCTCCACGGGCGGAAATGCGTCGTTGcaaga
tggagggaaagaaggaagagagggggcaATAAGCAATGACGAAGTTCTCT
CCAAGGAAGAGGCCCTTCGGCGCCTGGACCTAGACAGAAAATATGCCGAC
ATgatgaggcgggaggcgcgGGGCAGCGTGGCGGTGGGGCCCTCTGGCTC
GCCTACagcgcttccttctccctccccttcctccctggatGCCAAcgttc
tcccttcttcctcccctcctgctttcCAATGCGCCATTGCCGAGTACAAC
CGTCTCCTGCGGGCTTACGGGGTGCAAAATcgcctccccgaggcccaGGC
ACTCCTTCGATCCTTGCTCTCGCGTCAAGCCCCTGTTTCTTCCCAAACCC
TCACCGCCTACGTCTACGCGTGCTCCGCCTGCCAACCCCCGGCTCCCGAG
GCCGCAGAATCCGAGATGCAGGCCTGGGAGAACAacggccttccctctcc
ggACGCCTGGACGTGGGCCACGCTGGTCAGTGCCTACGTTCGCGCCGGTC
GACGGGAAGAGGCTTTGGGAACTTTCCAACGGATGAAACTCGCCGGGCAC
CCGGAGAACCTGGCGGCGTGCACGAGCGTATTGCAAGCCTTgggtcaagg
gagggggaggaaagatcgGGAGGCCATGCTGGATTTCTGGATTGATATGC
gggtggcgggggtggagccCGACGCCGTCGCCTACACAGTGTTGCTGCAA
GCCACCTGCGTGTCTACGGGCGACCTGGAGCGAGGCCTGTCGTATTTGGA
CGAGATGGAGCAACTCTCGGTGCTGCCGACCTTGCATGTTTTCAACACGC
TTCTTTTCACGGCGGCGCGAGCTCCCTTGTGGTTTCCAGGCTACAGTGCT
CTGCTCTACGAGCTGCTAGCGCGCTTGGAATCGAGCGGATGGGCCCCCGA
CGCCGTGACGTATCAAGGCCTGGTCCGCATCTGTGCACAGGCCGGGAACC
CGCTCTTGGCGGAGCGGTACATTGAGcggatgcaggaggaaggTCGGCAG
GAgtga back to top
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