EWM29502.1, cds1171 (CDS) Nannochloropsis gaditana

Overview
NameEWM29502.1
Unique Namecds1171
TypeCDS
OrganismNannochloropsis gaditana (N. gaditana B-31)
Alignment locationCM002456.1:1396409..1396534 +
Alignment locationCM002456.1:1396772..1398084 +
Alignment locationCM002456.1:1398143..1398155 +

Link to JBrowse

Properties
Property NameValue
Protein idEWM29502.1
Productpentatricopeptide repeat-containing protein
Orig transcript idgnl|cribi|Naga_100998g1.7602.mrna
GbkeyCDS
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
CM002456.1supercontigCM002456.1:1396409..1396534 +
CM002456.1supercontigCM002456.1:1396772..1398084 +
CM002456.1supercontigCM002456.1:1398143..1398155 +
Analyses
This CDS is derived from or has results from the following analyses
Analysis NameDate Performed
GO annotation for N. gaditana B312020-04-08
BLAST analysis for N. gaditana B-312020-04-07
InterPro analysis for N. gaditana B-312020-04-06
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
The following terms have been associated with this CDS:
Vocabulary: Molecular Function
TermDefinition
GO:0005515protein binding
Vocabulary: INTERPRO
TermDefinition
IPR011990TPR-like_helical_dom
IPR002885Pentatricopeptide_repeat
Homology
BLAST of EWM29502.1 vs. NCBI_GenBank
Match: gi|585112057|gb|EWM29502.1| (pentatricopeptide repeat-containing protein [Nannochloropsis gaditana])

HSP 1 Score: 979.163 bits (2530), Expect = 0.000e+0
Identity = 483/483 (100.00%), Postives = 483/483 (100.00%), Query Frame = 0
Query:    1 MIGASIWPRARVGRSSSSAVRPLLPSFAFSGGWMHVPVTIGMPTAPTIHCYHATIPLFGRKGGASALSPKRNTSPSTQRWMRRGAPPSSSTGGRAREGQLRRPFLHPSQRTTLPAVNDASELIDPDFELMMSELMRPIPSTGGNASLQDGGKEGREGAISNDEVLSKEEALRRLDLDRKYADMMRREARGSVAVGPSGSPTALPSPSPSSLDANVLPSSSPPAFQCAIAEYNRLLRAYGVQNRLPEAQALLRSLLSRQAPVSSQTLTAYVYACSACQPPAPEAAESEMQAWENNGLPSPDAWTWATLVSAYVRAGRREEALGTFQRMKLAGHPENLAACTSVLQALGQGRGRKDREAMLDFWIDMRVAGVEPDAVAYTVLLQATCVSTGDLERGLSYLDEMEQLSVLPTLHVFNTLLFTAARAPLWFPGYSALLYELLARLESSGWAPDAVTYQGLVRICAQAGNPLLAERYIERMQEEGRQE 483
            MIGASIWPRARVGRSSSSAVRPLLPSFAFSGGWMHVPVTIGMPTAPTIHCYHATIPLFGRKGGASALSPKRNTSPSTQRWMRRGAPPSSSTGGRAREGQLRRPFLHPSQRTTLPAVNDASELIDPDFELMMSELMRPIPSTGGNASLQDGGKEGREGAISNDEVLSKEEALRRLDLDRKYADMMRREARGSVAVGPSGSPTALPSPSPSSLDANVLPSSSPPAFQCAIAEYNRLLRAYGVQNRLPEAQALLRSLLSRQAPVSSQTLTAYVYACSACQPPAPEAAESEMQAWENNGLPSPDAWTWATLVSAYVRAGRREEALGTFQRMKLAGHPENLAACTSVLQALGQGRGRKDREAMLDFWIDMRVAGVEPDAVAYTVLLQATCVSTGDLERGLSYLDEMEQLSVLPTLHVFNTLLFTAARAPLWFPGYSALLYELLARLESSGWAPDAVTYQGLVRICAQAGNPLLAERYIERMQEEGRQE
Sbjct:    1 MIGASIWPRARVGRSSSSAVRPLLPSFAFSGGWMHVPVTIGMPTAPTIHCYHATIPLFGRKGGASALSPKRNTSPSTQRWMRRGAPPSSSTGGRAREGQLRRPFLHPSQRTTLPAVNDASELIDPDFELMMSELMRPIPSTGGNASLQDGGKEGREGAISNDEVLSKEEALRRLDLDRKYADMMRREARGSVAVGPSGSPTALPSPSPSSLDANVLPSSSPPAFQCAIAEYNRLLRAYGVQNRLPEAQALLRSLLSRQAPVSSQTLTAYVYACSACQPPAPEAAESEMQAWENNGLPSPDAWTWATLVSAYVRAGRREEALGTFQRMKLAGHPENLAACTSVLQALGQGRGRKDREAMLDFWIDMRVAGVEPDAVAYTVLLQATCVSTGDLERGLSYLDEMEQLSVLPTLHVFNTLLFTAARAPLWFPGYSALLYELLARLESSGWAPDAVTYQGLVRICAQAGNPLLAERYIERMQEEGRQE 483          
BLAST of EWM29502.1 vs. NCBI_GenBank
Match: gi|553190875|ref|XP_005855283.1| (pentatricopeptide repeat-containing protein, partial [Nannochloropsis gaditana CCMP526] >gi|422293784|gb|EKU21084.1| pentatricopeptide repeat-containing protein, partial [Nannochloropsis gaditana CCMP526])

HSP 1 Score: 976.467 bits (2523), Expect = 0.000e+0
Identity = 480/480 (100.00%), Postives = 480/480 (100.00%), Query Frame = 0
Query:    1 MIGASIWPRARVGRSSSSAVRPLLPSFAFSGGWMHVPVTIGMPTAPTIHCYHATIPLFGRKGGASALSPKRNTSPSTQRWMRRGAPPSSSTGGRAREGQLRRPFLHPSQRTTLPAVNDASELIDPDFELMMSELMRPIPSTGGNASLQDGGKEGREGAISNDEVLSKEEALRRLDLDRKYADMMRREARGSVAVGPSGSPTALPSPSPSSLDANVLPSSSPPAFQCAIAEYNRLLRAYGVQNRLPEAQALLRSLLSRQAPVSSQTLTAYVYACSACQPPAPEAAESEMQAWENNGLPSPDAWTWATLVSAYVRAGRREEALGTFQRMKLAGHPENLAACTSVLQALGQGRGRKDREAMLDFWIDMRVAGVEPDAVAYTVLLQATCVSTGDLERGLSYLDEMEQLSVLPTLHVFNTLLFTAARAPLWFPGYSALLYELLARLESSGWAPDAVTYQGLVRICAQAGNPLLAERYIERMQEEG 480
            MIGASIWPRARVGRSSSSAVRPLLPSFAFSGGWMHVPVTIGMPTAPTIHCYHATIPLFGRKGGASALSPKRNTSPSTQRWMRRGAPPSSSTGGRAREGQLRRPFLHPSQRTTLPAVNDASELIDPDFELMMSELMRPIPSTGGNASLQDGGKEGREGAISNDEVLSKEEALRRLDLDRKYADMMRREARGSVAVGPSGSPTALPSPSPSSLDANVLPSSSPPAFQCAIAEYNRLLRAYGVQNRLPEAQALLRSLLSRQAPVSSQTLTAYVYACSACQPPAPEAAESEMQAWENNGLPSPDAWTWATLVSAYVRAGRREEALGTFQRMKLAGHPENLAACTSVLQALGQGRGRKDREAMLDFWIDMRVAGVEPDAVAYTVLLQATCVSTGDLERGLSYLDEMEQLSVLPTLHVFNTLLFTAARAPLWFPGYSALLYELLARLESSGWAPDAVTYQGLVRICAQAGNPLLAERYIERMQEEG
Sbjct:    1 MIGASIWPRARVGRSSSSAVRPLLPSFAFSGGWMHVPVTIGMPTAPTIHCYHATIPLFGRKGGASALSPKRNTSPSTQRWMRRGAPPSSSTGGRAREGQLRRPFLHPSQRTTLPAVNDASELIDPDFELMMSELMRPIPSTGGNASLQDGGKEGREGAISNDEVLSKEEALRRLDLDRKYADMMRREARGSVAVGPSGSPTALPSPSPSSLDANVLPSSSPPAFQCAIAEYNRLLRAYGVQNRLPEAQALLRSLLSRQAPVSSQTLTAYVYACSACQPPAPEAAESEMQAWENNGLPSPDAWTWATLVSAYVRAGRREEALGTFQRMKLAGHPENLAACTSVLQALGQGRGRKDREAMLDFWIDMRVAGVEPDAVAYTVLLQATCVSTGDLERGLSYLDEMEQLSVLPTLHVFNTLLFTAARAPLWFPGYSALLYELLARLESSGWAPDAVTYQGLVRICAQAGNPLLAERYIERMQEEG 480          
BLAST of EWM29502.1 vs. NCBI_GenBank
Match: gi|299115247|emb|CBN74088.1| (conserved unknown protein [Ectocarpus siliculosus])

HSP 1 Score: 111.309 bits (277), Expect = 3.779e-22
Identity = 76/253 (30.04%), Postives = 124/253 (49.01%), Query Frame = 0
Query:  227 AIAEYNRLLRAYGVQNRLPEAQALLRSLLSRQAPVSSQTLTAYVYACSACQ--PPAPEAAESEMQAWENNGLPSPDAWTWATLVSAYVRAGRREEALGTFQRMKLAGHPENLAACTSVLQALGQGRGRKDREAMLDFWIDMRVAGVEPDAVAYTVLLQATCVSTGDLERGLSYLDEMEQLSVLPTLHVFNTLLFTAARAPLWFPGYSALLYELLARLESSGWAPDAVTYQGLVRICAQAGNPLLAERYIERMQ 477
            A  E++ L+R  G   R  EA++ +   + R+    ++   A + A +A +  P A E   SEM      G   P A  W + V+A+ RAGR   AL   + M+  GHP ++A  TS++   G  R +++       W DM + GV+PDA+AY  +++  C  T   ER + +LD+M+   + P+     TLL  AA AP W   Y  ++ +L+ R    G  P+  TY+ L+   +  G+     + IE + 
Sbjct:  255 AAEEFSFLVRTLGAHGRFEEARSRVIPEMRRRGVTPTEHTFASLLAGTAIERDPIAAEQVWSEMV----EGGIRPSAHAWCSRVNAHARAGRMRRALSLGKEMREQGHPWDVATYTSLI--AGSTR-KRNYSGAWGLWNDMVIWGVQPDAMAYNTMMK-LCADTRQYERAMLFLDDMDMEGLRPSRITIETLLKAAATAPQWIRAYGTIVDDLVQRFIGLGVTPEVDTYRALLLAYSNGGDADKVLQCIEEVH 499          
BLAST of EWM29502.1 vs. NCBI_GenBank
Match: gi|1204890840|ref|XP_021277119.1| (pentatricopeptide repeat-containing protein At2g18940, chloroplastic [Herrania umbratica])

HSP 1 Score: 98.9821 bits (245), Expect = 2.591e-18
Identity = 73/250 (29.20%), Postives = 118/250 (47.20%), Query Frame = 0
Query:  231 YNRLLRAYGVQNRLPEAQALLRSLLSRQAPVSSQTLTAYVYACSACQPPAPEAAESEMQAWENNGLPSPDAWTWATLVSAYVRAGRREEALGTFQRMKLAGHPENLAACTSVLQALGQGRGRKDREAMLDFWIDMRVAGVEPDAVAYTVLLQATCVSTGDLERGLSYLDEMEQLSVLPTLHVFNTLLFTAARAPLWFPGYSALLYELLARLESSGWAPDAVTYQGLVRICAQAGNPLLAERYIERMQEEG 480
            YN LL+ +G      EA ++L+ +     P  S T    V AC   +    E   + ++A    G+  P+A T+ T+++AY +AG+ +EAL  F RMK  G   N+    +VL  LG+   +   E M+    DM+V+G  P+ + +  +L A C + G  +     L EM+     P    FNTL+    R        +A +Y+ + R+   G+ P   TY  L+   A+ G+   AE  I  M+ +G
Sbjct:  342 YNSLLQVFGKAGVYSEALSILKEMEDNHCPADSVTYNELVAAC--VRAGFYEEGAAVIEAMTKKGV-MPNAVTYTTVINAYGKAGKEDEALKLFHRMKELGCVPNVCTYNAVLGILGK---KSHSEEMIKILCDMKVSGCSPNRITWNTML-AMCGNKGMHKYVNQVLREMKSCGFEPDRDTFNTLISAYGRCGSEID--AAKMYKEMIRV---GFTPCVTTYNALLNALARRGDWKAAESVILEMKNKG 579          
BLAST of EWM29502.1 vs. NCBI_GenBank
Match: gi|695003307|ref|XP_009384780.1| (PREDICTED: pentatricopeptide repeat-containing protein At2g18940, chloroplastic [Musa acuminata subsp. malaccensis] >gi|1091667076|ref|XP_018677959.1| PREDICTED: pentatricopeptide repeat-containing protein At2g18940, chloroplastic [Musa acuminata subsp. malaccensis])

HSP 1 Score: 95.9005 bits (237), Expect = 2.538e-17
Identity = 71/251 (28.29%), Postives = 114/251 (45.42%), Query Frame = 0
Query:  231 YNRLLRAYGVQNRLPEAQALLRSLLSRQAPVSSQTLTAYVYACSACQPPAPEAAESEMQAWENNGLPSPDAWTWATLVSAYVRAGRREEALGTFQRMKLAGHPENLAACTSVLQALGQGRGRKDREA-MLDFWIDMRVAGVEPDAVAYTVLLQATCVSTGDLERGLSYLDEMEQLSVLPTLHVFNTLLFTAARAPLWFPGYSALLYELLARLESSGWAPDAVTYQGLVRICAQAGNPLLAERYIERMQEEG 480
            YN LL+ YG   + P A  +L+ +     P  + T    V   +  +    E   + +    + G+  P++ T+ T++S Y +AG+ +EAL  F RMK  G   N     ++L  L    G+K R   MLD   DM+  G  P+ V +  +L A C   G         DEM++  V P    FNTL+    R      G S    ++   +  +G++P   TY  L+   A+ G+ + AE  I  M+++G
Sbjct:  364 YNSLLQVYGKAGKYPAAMGVLKEMEDNNCPADAVTYNELV--ATYARAGFYEEGAAVLDTMASKGI-MPNSVTYTTVISGYGKAGKEDEALALFDRMKKLGCVPNTCTYNTILGML----GKKSRTGEMLDILSDMKSNGCVPNRVTWNTML-AMCGKRGMENYVSQVFDEMKKSGVEPDRDTFNTLIAAYGRC-----GSSTQALQMYDEMVKAGFSPCTTTYNALLNAIARKGDWIAAESVILDMKKKG 601          
BLAST of EWM29502.1 vs. NCBI_GenBank
Match: gi|672117309|ref|XP_008781836.1| (PREDICTED: pentatricopeptide repeat-containing protein At2g18940, chloroplastic isoform X2 [Phoenix dactylifera])

HSP 1 Score: 93.2041 bits (230), Expect = 2.211e-16
Identity = 73/260 (28.08%), Postives = 123/260 (47.31%), Query Frame = 0
Query:  223 AFQCAIAEYNRLLRAYGVQNRLPEAQALLRSLLSRQAPVSSQTLTAYVYACSACQPPAPEAAESEMQAWENNGLPSPDAWTWATLVSAYVRAGRREEALGTFQRMKLAGHPENLAACTSVLQALGQGRGRKDREAMLDFWIDMRVAGVEPDAVAYTVLLQATCVSTGDLERGLS-YLDEMEQLSVLPTLHVFNTLLFTAARAPLWFPGYSAL-LYELLARLESSGWAPDAVTYQGLVRICAQAGNPLLAERYIERMQEEG 480
             F   I  YN LL+ YG      EA ++L+ +        + T    V   +  +    E   + +    N G+  P++ T+ T+++AY +AG+  EAL  F RMK  G   N+    ++L  LG+   +   E ML+   +M+  G  P+ + +  +L A C   G +E+ +S    EM+   V P    FNTL+    R  L   G  AL +Y+ + R   +G++P   TY  L+   A+ G+ + AE  ++ M+ +G
Sbjct:  318 GFVPGIVTYNSLLQVYGKAGNYTEALSVLKEMEDNNCTPDAVTFNELV--ATYARAGFYEEGAAVLDKMTNKGI-MPNSVTYTTVINAYGKAGKENEALALFDRMKKLGCVPNVCTYNTILGMLGK---KSQLEEMLNILCEMKSNGCVPNRITWNTML-AMCGKRG-MEKYVSQVFGEMKNRGVQPDRDTFNTLIAAYGRCGL---GTHALRMYDKMVR---AGFSPCLTTYNALLNAIARKGDWVAAESVMQDMRNKG 563          
BLAST of EWM29502.1 vs. NCBI_GenBank
Match: gi|672117307|ref|XP_008781835.1| (PREDICTED: pentatricopeptide repeat-containing protein At2g18940, chloroplastic isoform X1 [Phoenix dactylifera])

HSP 1 Score: 92.4337 bits (228), Expect = 3.442e-16
Identity = 73/260 (28.08%), Postives = 123/260 (47.31%), Query Frame = 0
Query:  223 AFQCAIAEYNRLLRAYGVQNRLPEAQALLRSLLSRQAPVSSQTLTAYVYACSACQPPAPEAAESEMQAWENNGLPSPDAWTWATLVSAYVRAGRREEALGTFQRMKLAGHPENLAACTSVLQALGQGRGRKDREAMLDFWIDMRVAGVEPDAVAYTVLLQATCVSTGDLERGLS-YLDEMEQLSVLPTLHVFNTLLFTAARAPLWFPGYSAL-LYELLARLESSGWAPDAVTYQGLVRICAQAGNPLLAERYIERMQEEG 480
             F   I  YN LL+ YG      EA ++L+ +        + T    V   +  +    E   + +    N G+  P++ T+ T+++AY +AG+  EAL  F RMK  G   N+    ++L  LG+   +   E ML+   +M+  G  P+ + +  +L A C   G +E+ +S    EM+   V P    FNTL+    R  L   G  AL +Y+ + R   +G++P   TY  L+   A+ G+ + AE  ++ M+ +G
Sbjct:  318 GFVPGIVTYNSLLQVYGKAGNYTEALSVLKEMEDNNCTPDAVTFNELV--ATYARAGFYEEGAAVLDKMTNKGI-MPNSVTYTTVINAYGKAGKENEALALFDRMKKLGCVPNVCTYNTILGMLGK---KSQLEEMLNILCEMKSNGCVPNRITWNTML-AMCGKRG-MEKYVSQVFGEMKNRGVQPDRDTFNTLIAAYGRCGL---GTHALRMYDKMVR---AGFSPCLTTYNALLNAIARKGDWVAAESVMQDMRNKG 563          
BLAST of EWM29502.1 vs. NCBI_GenBank
Match: gi|357466003|ref|XP_003603286.1| (proton gradient regulation protein [Medicago truncatula] >gi|355492334|gb|AES73537.1| proton gradient regulation protein [Medicago truncatula])

HSP 1 Score: 92.4337 bits (228), Expect = 4.059e-16
Identity = 58/185 (31.35%), Postives = 90/185 (48.65%), Query Frame = 0
Query:  299 PDAWTWATLVSAYVRAGRREEALGTFQRMKLAGHPENLAACTSVLQALGQGRGRKDREAMLDFWIDMRVAGVEPDAVAYTVLLQATCVSTGDLERGLSYLDEMEQLSVLPTLHVFNTL---LFTAARAPLWFPGYSALLYELLARLESSGWAPDAVTYQGLVRICAQAGNPLLAERYIERMQEEG 480
            PD  T+  L+ A   AG+ ++A   + +M+ + H  +     +++   G+     D E +  FW +M V G  PD V YT+L++A C S GD++R    LD M    + P LH +NT+   L  A R         AL  ELL  +ES G  P A +Y   +    ++G+P  A    E M++ G
Sbjct:  303 PDVITYTVLIDALCAAGKLDKAKELYVKMRASSHSPDRVTYITLMDKFGK---VGDLETVKRFWNEMEVDGYAPDVVTYTILIEALCKS-GDVDRAFDMLDVMTTKGIFPNLHTYNTMICGLLKARRLD------EAL--ELLENMESLGVKPTAFSYVLFIDYYGKSGDPAKAIDTFETMKKRG 475          

HSP 2 Score: 67.781 bits (164), Expect = 2.858e-8
Identity = 50/183 (27.32%), Postives = 86/183 (46.99%), Query Frame = 0
Query:  299 PDAWTWATLVSAYVRAGRREEALGTFQRMKLAGHPENLAACTSVLQALGQGRGRKDREAMLDFWIDMRVAGVEPDAVAYTVLLQATCVST-GDLERGLSYLDEMEQLSVLPTLHVFNTLLFTAARAPLWFPGYSALLYELLARLESSGWAPDAVTYQGLVRICAQAGNPLLAERYIERMQEEG 480
            P A+++   +  Y ++G   +A+ TF+ MK  G   ++AAC + L  L +     + E   D + D+   G+ PD+V Y +L++  C S  G +++    L EM      P + + N+L+ T  +A     G     +++  RL++   AP  VTY  L+    + G  L A      M E G
Sbjct:  443 PTAFSYVLFIDYYGKSGDPAKAIDTFETMKKRGIMPSIAACNASLYTLAETGRISEAE---DIFNDLHKCGLSPDSVTYNMLMK--CYSKAGQIDKATQLLSEMISKGCEPDVMIINSLINTLYKA-----GRVDAAWKMFGRLKNLKLAPTVVTYNILLTGLGKEGKILKALELFGSMTESG 615          

HSP 3 Score: 65.855 bits (159), Expect = 1.228e-7
Identity = 58/252 (23.02%), Postives = 108/252 (42.86%), Query Frame = 0
Query:  231 YNRLLRAYGVQNRLPEAQALLRSLLSRQAPVSSQTLTAYVYACSACQPPAPEAAESEMQAWENNGLPSPDAWTWATLVSAYVRAGRREEALGTFQRMKLAGHPENLAACTSVLQALGQGRGRKDREAMLDFWIDMRVAGVEPDAVAYTVLLQATCVSTGDLERGLSYLDEMEQLSVLPTLHVFNTLLFTAARAPLWFPGYSALLYELLARLESSGWAPDAVTYQGLVRICAQAGNPLLAERYIERMQEEGRQ 482
            YN LL A+G   R+ +   L   + SR    ++ T    +   SA           ++     +G  SP   T+  L+   ++AGR E+A+  F+ M   G   N      ++   G+  G  D     + +  M   G+ PD  +YT+L++  C+ TG ++  + Y +E++   + P    +N ++    ++       S     L + +++ G +PD  TY  L+     AG   +A +  E +Q  G +
Sbjct:  834 YNLLLDAHGKSKRINKLYDLYSEMRSRGCEPNAITHNIII---SALVKSNNLNKALDLYYELMSGDFSPTPCTYGPLIDGLLKAGRSEQAMKIFEEMLDYGCGPNSVIYNILINGFGKS-GEIDFAC--ELFKKMVKEGIRPDLKSYTILVECLCI-TGRIDEAVQYFEELKLTGLDPDTVSYNFIINGLGKSRRLDEALS-----LFSEMKNRGISPDLYTYNALILHLGIAGKVDVAVKMYEELQLVGLE 1073          
BLAST of EWM29502.1 vs. NCBI_GenBank
Match: gi|1191658236|gb|OTG10206.1| (putative pentatricopeptide repeat-containing protein [Helianthus annuus])

HSP 1 Score: 91.2781 bits (225), Expect = 8.429e-16
Identity = 69/254 (27.17%), Postives = 119/254 (46.85%), Query Frame = 0
Query:  214 NVLPSSSPPAFQ---CAIAEYNRLLRAYGVQNRLPEAQALLRSLLSRQAPVSSQTLTAYVYACSACQPPAPEAAESEMQAWENNGLPSPDAWTWATLVSAYVRAGRREEALGTFQRMKLAGHPENLAACTSVLQALGQGRGRKDREAMLDFWIDMRVAGVEPDAVAYTVLLQATCVSTGDLERGLSYLDEMEQLSVLPTLHVFNTLLFTAARAPLWFPGYSALLYELLARLESSGWAPDAVTYQGLVRICAQAG 464
            NVL S     FQ   C   +YN LLR  G +N    A       ++R+   + Q   A        +    E A+   +   + G  +   + ++ L+SAY ++G  ++A+  F+ MKL+G   NL    +++ A G+G     R +  D + DM   G +PD + Y  LL A C   G  E  ++  +EM    + P ++ +NTLL  A+       G+    ++++A + +    P+ VTY  ++R CA++G
Sbjct:  130 NVLHS-----FQLKLCGSDDYNFLLRELGNRNEWSMAIQCFEFAVNRERRRTEQGKLASSVISVLGRLGKVELAKKVFETAVSEGYGNT-VYAYSALISAYAKSGLCDDAIKLFETMKLSGLKPNLVTYNALIDACGKGGADFKRAS--DIFDDMLSNGFQPDRITYNSLL-AVCSGGGLWETAMNLFNEMCYRGIEPDIYTYNTLLDAASSG-----GHMDSAFQIMAEMTAKNVMPNEVTYSTVIRGCAKSG 369          
BLAST of EWM29502.1 vs. NCBI_GenBank
Match: gi|1063491787|ref|XP_007014231.2| (PREDICTED: pentatricopeptide repeat-containing protein At2g18940, chloroplastic [Theobroma cacao])

HSP 1 Score: 90.5077 bits (223), Expect = 1.548e-15
Identity = 69/250 (27.60%), Postives = 115/250 (46.00%), Query Frame = 0
Query:  231 YNRLLRAYGVQNRLPEAQALLRSLLSRQAPVSSQTLTAYVYACSACQPPAPEAAESEMQAWENNGLPSPDAWTWATLVSAYVRAGRREEALGTFQRMKLAGHPENLAACTSVLQALGQGRGRKDREAMLDFWIDMRVAGVEPDAVAYTVLLQATCVSTGDLERGLSYLDEMEQLSVLPTLHVFNTLLFTAARAPLWFPGYSALLYELLARLESSGWAPDAVTYQGLVRICAQAGNPLLAERYIERMQEEG 480
            YN LL+ +G      EA ++L+ +     P  S T    V A    +    E   + ++     G+  P+A T+ T+++AY +AG+ +EAL  F RMK +G   N+    +VL  LG+   +   E M+    DM+V+G  P+ + +  +L A C + G  +       EM+     P    FNTL+    R        +  +Y+ + R+   G+ P   TY  L+   A+ G+   AE  I  M+ +G
Sbjct:  342 YNSLLQVFGKAGVYTEALSILKEMEDNHCPADSVTYNELVAA--YVRAGFYEEGAAVIETMTKKGV-MPNAVTYTTVINAYGKAGKEDEALKLFHRMKESGCVPNVCTYNAVLGMLGK---KSRSEEMIKILCDMKVSGCSPNRITWNTML-AMCGNKGMHKYVNQVFREMKSCGFEPDRDTFNTLISAYGRCGSEID--ATKMYKEMIRV---GFTPCVTTYNALLNALARRGDWKAAESVILDMKNKG 579          
The following BLAST results are available for this feature:
BLAST of EWM29502.1 vs. NCBI_GenBank
Analysis Date: 2020-04-07 (BLAST analysis for N. gaditana B-31)
Total hits: 10
Match NameE-valueIdentityDescription
gi|585112057|gb|EWM29502.1|0.000e+0100.00pentatricopeptide repeat-containing protein [Nanno... [more]
gi|553190875|ref|XP_005855283.1|0.000e+0100.00pentatricopeptide repeat-containing protein, parti... [more]
gi|299115247|emb|CBN74088.1|3.779e-2230.04conserved unknown protein [Ectocarpus siliculosus][more]
gi|1204890840|ref|XP_021277119.1|2.591e-1829.20pentatricopeptide repeat-containing protein At2g18... [more]
gi|695003307|ref|XP_009384780.1|2.538e-1728.29PREDICTED: pentatricopeptide repeat-containing pro... [more]
gi|672117309|ref|XP_008781836.1|2.211e-1628.08PREDICTED: pentatricopeptide repeat-containing pro... [more]
gi|672117307|ref|XP_008781835.1|3.442e-1628.08PREDICTED: pentatricopeptide repeat-containing pro... [more]
gi|357466003|ref|XP_003603286.1|4.059e-1631.35proton gradient regulation protein [Medicago trunc... [more]
gi|1191658236|gb|OTG10206.1|8.429e-1627.17putative pentatricopeptide repeat-containing prote... [more]
gi|1063491787|ref|XP_007014231.2|1.548e-1527.60PREDICTED: pentatricopeptide repeat-containing pro... [more]
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Relationships

This CDS is a part of the following mRNA feature(s):

Feature NameUnique NameSpeciesType
rna1172rna1172Nannochloropsis gaditana (N. gaditana B-31)mRNA


Sequences
Synonyms
Publications