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Properties
| Property Name | Value |
|---|
| Product | 26s proteasome regulatory subunit n8 |
| Orig transcript id | gnl|cribi|Naga_100998g2.7603.mrna |
| Orig protein id | gnl|cribi|Naga_100998g2.7603 |
| Gbkey | mRNA |
Alignments
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| CM002456.1 | supercontig | CM002456.1:1394794..1395863 - |
Analyses
This mRNA is derived from or has results from the following analyses
Relationships
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
mRNA sequence >rna1171 ID=rna1171|Name=rna1171|organism=Nannochloropsis gaditana|type=mRNA|length=2280bp
TGGCTTGCCAAGGACCCTGGGTGCGTTAAATATCGTACCGCCAAGCATCA
CCCACACTCGTGCCATCGTCAGGCGCGTGGTAGCGTTTTACATATCCTTG
AATGGCCTGGAGGGATGAATATCACAAGATAACTCGTCTTTTGGTACGGA
GCATGCTGTCAAATTGCCCGTGTACTACTTGAACGCTTTCGAAAATGATC
TCAGCCTCTTACTTAGATGCTATGAGGAATGATTATAAAATTTGCCCGCC
AAAACTCAAAGAAGCTTTTGCTTTGTTCAATACTACTACGCTCTTCCCCC
ATATTCCACGCAGGACGAGAACAAACAACGCTCTTTCCAACCACATACCC
ATTTCAATGGCCAACCCTGTTCAAAGCTTTTTTATTCTTTTTGCTATTAT
CAGTGTCTGTTGGACCTCAGTGGCCGACGCAGGAGGAGCGAAAGTCAACA
ATGTCACGCCCTCAATGGCGCGCACTATCTTGATCGCAGCTATGTCTCAT
GAGATGGACACAGTGGCATCCGCGGACCTGCCGTCAAGCCTAGCGAAGAC
GGAAGCCAACACCACCTGTATCATGACATATTGCACGGACGCGGCTTTGG
CTTGTGTGAAGGACCAGGCATGCCGCACCGCCCTGTCCTGCCTCTCAACC
TGCGACTCATTGGAAGACGATAGTCCCGACAAGATCGAGCTGCAGAAATG
CACGGCAGACTGCGTGGTGACCTATGAGAACGAGGCCCTGGACGCCGTCA
ACGGCTGCTTCGACTCTCACGACTGCATTGCCCTGACGCCCATCCCCCTC
GCGTGCCGGGACACCCATCCTGCCTTTCCGACCCCACAAAATGTCACGGA
CATGGAAGGGGCGTGGTGGGCGACTTGGGGGAAGAACGCTGTGTACGACT
GTTATCCGTGCCAACGCCTGTCGTTCTCCCCGCTGAACGCCTCGTCCTGG
TTGTACACGTCCAAGTACTTGACCCCCACCTTGGAGGGCGGGGTGCGGGC
CTACGAGCTTCAGGCAGCATTTCCTTGGCCGGCGGACGGTATGGCGACAG
CCATTGCCTTCAATTACACCTACCAAGGTAGGGAAGAGAGCGAGGCACGG
AGGGTTGTCAGCGATATCCTCCCGCCCCTGGGGAACCGCTCTCTGTGTGC
TCGTCTTCGCCCCCTCTTTCCTCTCCCTATCCCCCTGCTAGATCGCATCT
TTTATGTTTTCTTTTCTTCCTGTCTTCTCTTATCCGGACCATTTGGCCCC
ACCCCGTCTGCACGCTCACTTTTCGCGTCTGTGGTCTGCCCCAGGAATGA
GCCACGGAGAGGAGTGGCGGTTCCTACACGTGGCCCCATCCCTTGTTGTT
CTTTACTACTGCGGGCAAGGCAACACATGGCAGTACGAGGGAGGGCTGGT
CTTGTCGCGAGAACGAAGCAGCCCCCCCGACCACGTCTCCTTGGCCGCAG
AGGCCTTTGCAAAAATTGGCATAGATTTTGAGGAGGAGTTTTGCGAGCTG
CAACCCAACCGCCCATGTCCTGCCCTTTAAGCGAGCATTGCGAGCCCTTG
GAGCCCAGCATCCTGAGAGATATTGAGAGAGCCTAAGCTGGAGCATGCTT
GGAAGGGCGGTAGAGCCACGGGGGTGTCTCCTTGTTACCCGGTGTACAGA
CAAGGCTTGAGGAATATCGGAATGGTAGCAAAGGGTTAAGGAACAAATCA
TCCCGGGATATGCCCCTTAGATATTGTCTATATTCCTTTCTTCTTCAAAG
GATACGCACGGCTGTTGGCTTTCTCGTGCTCATATAGCAGTGTGTCACCC
TCTTCTTTAAATGGGAGACTGTCCTTGTCTCTCGCCTAGCCTTCGAGATT
TTCTGAAGCGAATAATTCAATGAAGGGGCTATCCACAAAGCTTCAGCAAT
GGCTTTGCTCCAATATACTTCTGATTTCTCAACACGCTGTATACTTTCTG
AAATTCCTCGCAGGAGACGTGAAGTTCAAGATCAAAAACTCAAAAATTTC
CTCCAAAAATTCAGTCTCTAGATGTACTCAATTTGGTTTTACATGAATTT
GTTGAAATGTAAAAATCAAAAAGCTGAGGCGCATGTCATAGACGTCAGGC
ACGAGAGTCACCATCCGAGGCACTCCTATCAAAAATTGAGCGGTCAACCT
TCGCGTGCCTAGTCCTGGTCTAGTTATAGCACATCGTACACTACCTGTCA
TGATCCTACTTGAAAACTTCGACATTTGCTTGATTGCAACGACGCGTTTT
ATATATATCTTCACCTACTAATAACCTCCC back to topprotein sequence of rna1171 >rna1171-protein ID=rna1171-protein|Name=rna1171|organism=Nannochloropsis gaditana|type=polypeptide|length=169bp
MAPMGVEKDKKDGVGEDAPKNGDNKKPEEEATTIVTTANLAADELEVIVH
PLVLLSTVDHYNRVAKDTRKRVVGVLLGTTWRGRIDITNSFAVPFEEDLK
NPLVWYLDHNYLESMFYMFKKINAKERIVGFYSTGPKIKENDLQIDEVFR
RFSSAPVFVIIDVRRRWRG back to topmRNA from alignment at CM002456.1:1394794..1395863- Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below. >rna1171 ID=rna1171|Name=rna1171|organism=Nannochloropsis gaditana|type=mRNA|length=1070bp|location=Sequence derived from alignment at CM002456.1:1394794..1395863- (Nannochloropsis gaditana)
ATGGCACCAATGGGCGTAGAGAAGGATAAAAAGGATGGAGTGGGGGAAGA
TGCCCCAAAAAATGGAGATAACAAGAAGCCCGAGGAGGAAGCGACGACAA
TCGTTACGACTGCAAATCTTGCCGCTGATGAGGTACGGTGAAAGAACTTG
GCGGAGTTTCATAGACGTGTGTGTCAATGCTTGCGATCTCTTGTGTTGCA
AGTGGCAGAATTGGCAGATTTCCCTCCTATATCTCTCGCACACCCCCACC
AGCTCCACCCCAATAACATCTCGTCTCACAATTTTCCTTCTGTTCATTTC
CTCTCTTGCCTTTTCCATCTCAAAACATCACTAGCTTGAAGTCATCGTCC
ATCCTCTCGTTCTCCTATCCACTGTCGATCACTACAATCGCGTGGCCAAG
GACACAAGGAAGCGCGTCGTGGGAGTCCTGTTGGGCACCACATGGAGAGG
ACGCATCGACATCACAAACTCCTTTGCAGGTAAGGTCGCATGATCTCGTG
GCAATCCCGTTGGATTGATTTAATCGATTTTTAGGGCTTGTTTTGTCCAG
CGCGCGTGCGGGGGAGTCTGGATGCCCGCTCTCATTTCCTCCTCCCTATC
CCTCCTCCATCCCAGTTCCCTTCGAAGAGGACTTAAAGAACCCACTTGTT
TGGTATCTGGACCACAACTATCTCGAAAGCATGTTTTACATGTTCAAGAA
GATTAACGGTGCGTCCCGACCTGCCCCGCTTCCTCTCATCCTGCTTGCCT
TGCCTCCTGACTCTACCCTCTCCTTCCCTCCTCCCTCCCCTCTTGGGCAT
TTCCTGGCCTGCCAGCCAAAGAGCGTATCGTCGGGTTCTACAGCACTGGG
CCCAAAATCAAAGAAAACGATCTCCAGGTGGGTGATATGGGTGCAGACGC
CCTTCGCCCGCGTGCACGCCTCTCACCCTTCCCCCCTTCCTCCCTTCAGA
TCGACGAAGTCTTTCGGCGGTTCTCCTCCGCCCCTGTGTTTGTCATCATC
GACGTGCGGTCAGGCGTGGAGGGCATCCCGGTCACGGCCTACAGGAGCAA
GGAGGAGGTGGAGGGGGTGA back to topCoding sequence (CDS) from alignment at CM002456.1:1394794..1395863- >rna1171 ID=rna1171|Name=rna1171|organism=Nannochloropsis gaditana|type=CDS|length=3060bp|location=Sequence derived from alignment at CM002456.1:1394794..1395863- (Nannochloropsis gaditana)
GAGGAGGTGGAGGGGGTGAATCGACGAAGTCTTTCGGCGGTTCTCCTCCG
CCCCTGTGTTTGTCATCATCGACGTGCGCCAAAGAGCGTATCGTCGGGTT
CTACAGCACTGGGCCCAAAATCAAAGAAAACGATCTCCAGTTCCCTTCGA
AGAGGACTTAAAGAACCCACTTGTTTGGTATCTGGACCACAACTATCTCG
AAAGCATGTTTTACATGTTCAAGAAGATTAACGCTTGAAGTCATCGTCCA
TCCTCTCGTTCTCCTATCCACTGTCGATCACTACAATCGCGTGGCCAAGG
ACACAAGGAAGCGCGTCGTGGGAGTCCTGTTGGGCACCACATGGAGAGGA
CGCATCGACATCACAAACTCCTTTGCAGATGGCACCAATGGGCGTAGAGA
AGGATAAAAAGGATGGAGTGGGGGAAGATGCCCCAAAAAATGGAGATAAC
AAGAAGCCCGAGGAGGAAGCGACGACAATCGTTACGACTGCAAATCTTGC
CGCTGATGAGGAGGAGGTGGAGGGGGTGAATCGACGAAGTCTTTCGGCGG
TTCTCCTCCGCCCCTGTGTTTGTCATCATCGACGTGCGCCAAAGAGCGTA
TCGTCGGGTTCTACAGCACTGGGCCCAAAATCAAAGAAAACGATCTCCAG
TTCCCTTCGAAGAGGACTTAAAGAACCCACTTGTTTGGTATCTGGACCAC
AACTATCTCGAAAGCATGTTTTACATGTTCAAGAAGATTAACGCTTGAAG
TCATCGTCCATCCTCTCGTTCTCCTATCCACTGTCGATCACTACAATCGC
GTGGCCAAGGACACAAGGAAGCGCGTCGTGGGAGTCCTGTTGGGCACCAC
ATGGAGAGGACGCATCGACATCACAAACTCCTTTGCAGATGGCACCAATG
GGCGTAGAGAAGGATAAAAAGGATGGAGTGGGGGAAGATGCCCCAAAAAA
TGGAGATAACAAGAAGCCCGAGGAGGAAGCGACGACAATCGTTACGACTG
CAAATCTTGCCGCTGATGAGGAGGAGGTGGAGGGGGTGAATCGACGAAGT
CTTTCGGCGGTTCTCCTCCGCCCCTGTGTTTGTCATCATCGACGTGCGCC
AAAGAGCGTATCGTCGGGTTCTACAGCACTGGGCCCAAAATCAAAGAAAA
CGATCTCCAGTTCCCTTCGAAGAGGACTTAAAGAACCCACTTGTTTGGTA
TCTGGACCACAACTATCTCGAAAGCATGTTTTACATGTTCAAGAAGATTA
ACGCTTGAAGTCATCGTCCATCCTCTCGTTCTCCTATCCACTGTCGATCA
CTACAATCGCGTGGCCAAGGACACAAGGAAGCGCGTCGTGGGAGTCCTGT
TGGGCACCACATGGAGAGGACGCATCGACATCACAAACTCCTTTGCAGAT
GGCACCAATGGGCGTAGAGAAGGATAAAAAGGATGGAGTGGGGGAAGATG
CCCCAAAAAATGGAGATAACAAGAAGCCCGAGGAGGAAGCGACGACAATC
GTTACGACTGCAAATCTTGCCGCTGATGAGGAGGAGGTGGAGGGGGTGAA
TCGACGAAGTCTTTCGGCGGTTCTCCTCCGCCCCTGTGTTTGTCATCATC
GACGTGCGCCAAAGAGCGTATCGTCGGGTTCTACAGCACTGGGCCCAAAA
TCAAAGAAAACGATCTCCAGTTCCCTTCGAAGAGGACTTAAAGAACCCAC
TTGTTTGGTATCTGGACCACAACTATCTCGAAAGCATGTTTTACATGTTC
AAGAAGATTAACGCTTGAAGTCATCGTCCATCCTCTCGTTCTCCTATCCA
CTGTCGATCACTACAATCGCGTGGCCAAGGACACAAGGAAGCGCGTCGTG
GGAGTCCTGTTGGGCACCACATGGAGAGGACGCATCGACATCACAAACTC
CTTTGCAGATGGCACCAATGGGCGTAGAGAAGGATAAAAAGGATGGAGTG
GGGGAAGATGCCCCAAAAAATGGAGATAACAAGAAGCCCGAGGAGGAAGC
GACGACAATCGTTACGACTGCAAATCTTGCCGCTGATGAGGAGGAGGTGG
AGGGGGTGAATCGACGAAGTCTTTCGGCGGTTCTCCTCCGCCCCTGTGTT
TGTCATCATCGACGTGCGCCAAAGAGCGTATCGTCGGGTTCTACAGCACT
GGGCCCAAAATCAAAGAAAACGATCTCCAGTTCCCTTCGAAGAGGACTTA
AAGAACCCACTTGTTTGGTATCTGGACCACAACTATCTCGAAAGCATGTT
TTACATGTTCAAGAAGATTAACGCTTGAAGTCATCGTCCATCCTCTCGTT
CTCCTATCCACTGTCGATCACTACAATCGCGTGGCCAAGGACACAAGGAA
GCGCGTCGTGGGAGTCCTGTTGGGCACCACATGGAGAGGACGCATCGACA
TCACAAACTCCTTTGCAGATGGCACCAATGGGCGTAGAGAAGGATAAAAA
GGATGGAGTGGGGGAAGATGCCCCAAAAAATGGAGATAACAAGAAGCCCG
AGGAGGAAGCGACGACAATCGTTACGACTGCAAATCTTGCCGCTGATGAG
GAGGAGGTGGAGGGGGTGAATCGACGAAGTCTTTCGGCGGTTCTCCTCCG
CCCCTGTGTTTGTCATCATCGACGTGCGCCAAAGAGCGTATCGTCGGGTT
CTACAGCACTGGGCCCAAAATCAAAGAAAACGATCTCCAGTTCCCTTCGA
AGAGGACTTAAAGAACCCACTTGTTTGGTATCTGGACCACAACTATCTCG
AAAGCATGTTTTACATGTTCAAGAAGATTAACGCTTGAAGTCATCGTCCA
TCCTCTCGTTCTCCTATCCACTGTCGATCACTACAATCGCGTGGCCAAGG
ACACAAGGAAGCGCGTCGTGGGAGTCCTGTTGGGCACCACATGGAGAGGA
CGCATCGACATCACAAACTCCTTTGCAGATGGCACCAATGGGCGTAGAGA
AGGATAAAAAGGATGGAGTGGGGGAAGATGCCCCAAAAAATGGAGATAAC
AAGAAGCCCGAGGAGGAAGCGACGACAATCGTTACGACTGCAAATCTTGC
CGCTGATGAG back to top
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