EWM29503.1, cds1170 (CDS) Nannochloropsis gaditana
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Overview
Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Analyses
This CDS is derived from or has results from the following analyses
Annotated Terms
The following terms have been associated with this CDS:
Homology
BLAST of EWM29503.1 vs. NCBI_GenBank
Match: gi|585112058|gb|EWM29503.1| (26s proteasome regulatory subunit n8 [Nannochloropsis gaditana]) HSP 1 Score: 346.665 bits (888), Expect = 7.572e-121 Identity = 169/169 (100.00%), Postives = 169/169 (100.00%), Query Frame = 0
Query: 1 MAPMGVEKDKKDGVGEDAPKNGDNKKPEEEATTIVTTANLAADELEVIVHPLVLLSTVDHYNRVAKDTRKRVVGVLLGTTWRGRIDITNSFAVPFEEDLKNPLVWYLDHNYLESMFYMFKKINAKERIVGFYSTGPKIKENDLQIDEVFRRFSSAPVFVIIDVRRRWRG 169
MAPMGVEKDKKDGVGEDAPKNGDNKKPEEEATTIVTTANLAADELEVIVHPLVLLSTVDHYNRVAKDTRKRVVGVLLGTTWRGRIDITNSFAVPFEEDLKNPLVWYLDHNYLESMFYMFKKINAKERIVGFYSTGPKIKENDLQIDEVFRRFSSAPVFVIIDVRRRWRG
Sbjct: 1 MAPMGVEKDKKDGVGEDAPKNGDNKKPEEEATTIVTTANLAADELEVIVHPLVLLSTVDHYNRVAKDTRKRVVGVLLGTTWRGRIDITNSFAVPFEEDLKNPLVWYLDHNYLESMFYMFKKINAKERIVGFYSTGPKIKENDLQIDEVFRRFSSAPVFVIIDVRRRWRG 169
BLAST of EWM29503.1 vs. NCBI_GenBank
Match: gi|298708582|emb|CBJ30666.1| (conserved unknown protein [Ectocarpus siliculosus]) HSP 1 Score: 203.371 bits (516), Expect = 2.327e-61 Identity = 90/124 (72.58%), Postives = 107/124 (86.29%), Query Frame = 0
Query: 46 EVIVHPLVLLSTVDHYNRVAKDTRKRVVGVLLGTTWRGRIDITNSFAVPFEEDLKNPLVWYLDHNYLESMFYMFKKINAKERIVGFYSTGPKIKENDLQIDEVFRRFSSAPVFVIIDVRRRWRG 169
EV+VHPLVLLSTVDHYNRVA+D +KRVVGVLLG+ ++G +D+TNSFAVPFEED++NP +WYLDHN+LE MF MFKK+ AKERI GFYSTGPKI+ENDL I E+F+RF PV+VIIDVR G
Sbjct: 72 EVVVHPLVLLSTVDHYNRVARDAKKRVVGVLLGSKYKGTVDVTNSFAVPFEEDVRNPNIWYLDHNFLEGMFAMFKKVAAKERICGFYSTGPKIRENDLAIAELFKRFCPNPVYVIIDVRPDVEG 195
BLAST of EWM29503.1 vs. NCBI_GenBank
Match: gi|301105527|ref|XP_002901847.1| (26S proteasome non-ATPase regulatory subunit 7 [Phytophthora infestans T30-4] >gi|262099185|gb|EEY57237.1| 26S proteasome non-ATPase regulatory subunit 7 [Phytophthora infestans T30-4]) HSP 1 Score: 198.364 bits (503), Expect = 4.080e-60 Identity = 89/124 (71.77%), Postives = 106/124 (85.48%), Query Frame = 0
Query: 46 EVIVHPLVLLSTVDHYNRVAKDTRKRVVGVLLGTTWRGRIDITNSFAVPFEEDLKNPLVWYLDHNYLESMFYMFKKINAKERIVGFYSTGPKIKENDLQIDEVFRRFSSAPVFVIIDVRRRWRG 169
EV+ HPLVLLS VDHYNRVA+DT KRVVGVLLG+T+ G+ DITNSFAVPF+EDL+NP +WYLDH++LESM+ MFKKINAKERIVGFYS+GPKI++ DL ID++FRR+ PV VI DVR G
Sbjct: 13 EVVTHPLVLLSIVDHYNRVARDTSKRVVGVLLGSTFHGKCDITNSFAVPFDEDLRNPGIWYLDHDFLESMYQMFKKINAKERIVGFYSSGPKIRKADLDIDDLFRRYCPNPVLVICDVRTNVEG 136
BLAST of EWM29503.1 vs. NCBI_GenBank
Match: gi|953486571|emb|CEG49474.1| (26s proteasome non-atpase regulatory subunit 7 [Plasmopara halstedii]) HSP 1 Score: 197.208 bits (500), Expect = 9.009e-60 Identity = 94/138 (68.12%), Postives = 111/138 (80.43%), Query Frame = 0
Query: 32 TTIVTTANLAADELEVIVHPLVLLSTVDHYNRVAKDTRKRVVGVLLGTTWRGRIDITNSFAVPFEEDLKNPLVWYLDHNYLESMFYMFKKINAKERIVGFYSTGPKIKENDLQIDEVFRRFSSAPVFVIIDVRRRWRG 169
T I TT L EV+ HPLVLLS VDHYNRVA+DT KRVVGVLLG+T+ G+ DITNSFAVPF+EDL+NP +WYLDH++LESM+ MFKKINAKERIVGFYS+GPKI++ DL ID++FRR+ PV VI DVR G
Sbjct: 2 TEISTTRGLPE---EVVTHPLVLLSIVDHYNRVARDTSKRVVGVLLGSTFHGKCDITNSFAVPFDEDLRNPGIWYLDHDFLESMYQMFKKINAKERIVGFYSSGPKIRKADLDIDDLFRRYCPNPVLVICDVRPNVEG 136
BLAST of EWM29503.1 vs. NCBI_GenBank
Match: gi|676394423|ref|XP_009040489.1| (hypothetical protein AURANDRAFT_32049 [Aureococcus anophagefferens] >gi|323448859|gb|EGB04752.1| hypothetical protein AURANDRAFT_32049 [Aureococcus anophagefferens]) HSP 1 Score: 197.208 bits (500), Expect = 2.509e-59 Identity = 87/130 (66.92%), Postives = 110/130 (84.62%), Query Frame = 0
Query: 35 VTTANLAADELEVIVHPLVLLSTVDHYNRVAKDTRKRVVGVLLGTTWRGRIDITNSFAVPFEEDLKNPLVWYLDHNYLESMFYMFKKINAKERIVGFYSTGPKIKENDLQIDEVFRRFSSAPVFVIIDVR 164
V + + ++ V+VHPLVLLSTVDHYNRVA+DT+KRVVGVLLGT G +D+TNSFAVPFEED KNP +WYLDHNYLE+M+ M+KK+NA+E +VG+YSTGPKIKEND++ID + + + + PVFVIIDVR
Sbjct: 14 VVSGEASGPKVTVVVHPLVLLSTVDHYNRVARDTKKRVVGVLLGTRSGGDVDVTNSFAVPFEEDSKNPAIWYLDHNYLETMYRMYKKVNAREVVVGYYSTGPKIKENDIKIDALMQDYCAQPVFVIIDVR 143
BLAST of EWM29503.1 vs. NCBI_GenBank
Match: gi|570331037|gb|ETO78985.1| (hypothetical protein F444_06223 [Phytophthora parasitica P1976]) HSP 1 Score: 195.667 bits (496), Expect = 4.623e-59 Identity = 88/124 (70.97%), Postives = 106/124 (85.48%), Query Frame = 0
Query: 46 EVIVHPLVLLSTVDHYNRVAKDTRKRVVGVLLGTTWRGRIDITNSFAVPFEEDLKNPLVWYLDHNYLESMFYMFKKINAKERIVGFYSTGPKIKENDLQIDEVFRRFSSAPVFVIIDVRRRWRG 169
EV+ HPLVLLS VDHYNRVA+DT KRVVGVLLG+T+ G+ DITNSFAVPF+EDL+NP +WYLDH++LE+M+ MFKKINAKERIVGFYS+GPKI++ DL ID++FRR+ PV VI DVR G
Sbjct: 17 EVVTHPLVLLSIVDHYNRVARDTSKRVVGVLLGSTFHGKCDITNSFAVPFDEDLRNPGIWYLDHDFLENMYQMFKKINAKERIVGFYSSGPKIRKADLDIDDLFRRYCPNPVLVICDVRPNVEG 140
BLAST of EWM29503.1 vs. NCBI_GenBank
Match: gi|675165437|ref|XP_008891603.1| (hypothetical protein PPTG_02295 [Phytophthora parasitica INRA-310] >gi|568022652|gb|ETL96716.1| hypothetical protein L917_05861 [Phytophthora parasitica] >gi|568107707|gb|ETN22331.1| hypothetical protein PPTG_02295 [Phytophthora parasitica INRA-310] >gi|570954754|gb|ETP20011.1| hypothetical protein F441_06174 [Phytophthora parasitica CJ01A1] >gi|570989798|gb|ETP47936.1| hypothetical protein F442_06197 [Phytophthora parasitica P10297] >gi|970639886|gb|KUF82691.1| 26S proteasome non-ATPase regulatory subunit 7 [Phytophthora nicotianae]) HSP 1 Score: 195.667 bits (496), Expect = 4.828e-59 Identity = 88/124 (70.97%), Postives = 106/124 (85.48%), Query Frame = 0
Query: 46 EVIVHPLVLLSTVDHYNRVAKDTRKRVVGVLLGTTWRGRIDITNSFAVPFEEDLKNPLVWYLDHNYLESMFYMFKKINAKERIVGFYSTGPKIKENDLQIDEVFRRFSSAPVFVIIDVRRRWRG 169
EV+ HPLVLLS VDHYNRVA+DT KRVVGVLLG+T+ G+ DITNSFAVPF+EDL+NP +WYLDH++LE+M+ MFKKINAKERIVGFYS+GPKI++ DL ID++FRR+ PV VI DVR G
Sbjct: 17 EVVTHPLVLLSIVDHYNRVARDTSKRVVGVLLGSTFHGKCDITNSFAVPFDEDLRNPGIWYLDHDFLENMYQMFKKINAKERIVGFYSSGPKIRKADLDIDDLFRRYCPNPVLVICDVRPNVEG 140
BLAST of EWM29503.1 vs. NCBI_GenBank
Match: gi|566027343|gb|ETI50254.1| (hypothetical protein F443_06163 [Phytophthora parasitica P1569] >gi|567964653|gb|ETK90137.1| hypothetical protein L915_06040 [Phytophthora parasitica] >gi|567993355|gb|ETL43535.1| hypothetical protein L916_05977 [Phytophthora parasitica] >gi|568053013|gb|ETM49867.1| hypothetical protein L914_05982 [Phytophthora parasitica]) HSP 1 Score: 194.897 bits (494), Expect = 8.483e-59 Identity = 87/124 (70.16%), Postives = 106/124 (85.48%), Query Frame = 0
Query: 46 EVIVHPLVLLSTVDHYNRVAKDTRKRVVGVLLGTTWRGRIDITNSFAVPFEEDLKNPLVWYLDHNYLESMFYMFKKINAKERIVGFYSTGPKIKENDLQIDEVFRRFSSAPVFVIIDVRRRWRG 169
EV+ HPLVLLS VDHYNRVA+DT KRVVGVLLG+T+ G+ DITNSFAVPF+EDL+NP +WYLDH++LE+M+ MFKKINAKER+VGFYS+GPKI++ DL ID++FRR+ PV VI DVR G
Sbjct: 17 EVVTHPLVLLSIVDHYNRVARDTSKRVVGVLLGSTFHGKCDITNSFAVPFDEDLRNPGIWYLDHDFLENMYQMFKKINAKERVVGFYSSGPKIRKADLDIDDLFRRYCPNPVLVICDVRPNVEG 140
BLAST of EWM29503.1 vs. NCBI_GenBank
Match: gi|1214709953|gb|OWZ21088.1| (26S proteasome non-ATPase regulatory protein [Phytophthora megakarya]) HSP 1 Score: 194.512 bits (493), Expect = 9.097e-59 Identity = 88/124 (70.97%), Postives = 106/124 (85.48%), Query Frame = 0
Query: 46 EVIVHPLVLLSTVDHYNRVAKDTRKRVVGVLLGTTWRGRIDITNSFAVPFEEDLKNPLVWYLDHNYLESMFYMFKKINAKERIVGFYSTGPKIKENDLQIDEVFRRFSSAPVFVIIDVRRRWRG 169
EV+ HPLVLLS VDHYNRVA+DT KRVVGVLLG+T+ G+ DITNSFAVPF+EDL+NP +WYLDH++LE+M+ MFKKINAKERIVGFYS+GPKI++ DL ID++FRR+ PV VI DVR G
Sbjct: 15 EVVTHPLVLLSIVDHYNRVARDTSKRVVGVLLGSTFHGKCDITNSFAVPFDEDLRNPGIWYLDHDFLENMYQMFKKINAKERIVGFYSSGPKIRKADLDIDDLFRRYCPNPVLVICDVRPNVDG 138
BLAST of EWM29503.1 vs. NCBI_GenBank
Match: gi|1173957694|gb|OQS04177.1| (26S proteasome non-ATPase regulatory subunit 7 [Thraustotheca clavata]) HSP 1 Score: 192.971 bits (489), Expect = 2.543e-58 Identity = 87/124 (70.16%), Postives = 104/124 (83.87%), Query Frame = 0
Query: 46 EVIVHPLVLLSTVDHYNRVAKDTRKRVVGVLLGTTWRGRIDITNSFAVPFEEDLKNPLVWYLDHNYLESMFYMFKKINAKERIVGFYSTGPKIKENDLQIDEVFRRFSSAPVFVIIDVRRRWRG 169
EV+ HPLVLLS VDHYNRVAKDT KRVVGVLLG+ +G+ D+TNSFAVPF+EDL++P +WYLDH++LE+MF MFKKI+A ERIVGFYSTGPKI+ DL +DE+FRR+ S PV VI DVR G
Sbjct: 6 EVVTHPLVLLSIVDHYNRVAKDTSKRVVGVLLGSVSKGKCDVTNSFAVPFDEDLRHPTIWYLDHDFLENMFGMFKKISANERIVGFYSTGPKIRAADLALDELFRRYCSHPVLVICDVRPNVEG 129 The following BLAST results are available for this feature:
BLAST of EWM29503.1 vs. NCBI_GenBank
Analysis Date: 2020-04-07 (BLAST analysis for N. gaditana B-31) Total hits: 10
Relationships
This CDS is a part of the following mRNA feature(s):
Sequences
Synonyms
Publications
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