EWM29503.1, cds1170 (CDS) Nannochloropsis gaditana

Overview
NameEWM29503.1
Unique Namecds1170
TypeCDS
OrganismNannochloropsis gaditana (N. gaditana B-31)
Alignment locationCM002456.1:1395732..1395863 -
Alignment locationCM002456.1:1395385..1395529 -
Alignment locationCM002456.1:1395156..1395248 -
Alignment locationCM002456.1:1394987..1395048 -
Alignment locationCM002456.1:1394856..1394914 -
Alignment locationCM002456.1:1394794..1394812 -

Link to JBrowse

Properties
Property NameValue
Protein idEWM29503.1
Product26s proteasome regulatory subunit n8
Orig transcript idgnl|cribi|Naga_100998g2.7603.mrna
GbkeyCDS
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
CM002456.1supercontigCM002456.1:1395732..1395863 -
CM002456.1supercontigCM002456.1:1395385..1395529 -
CM002456.1supercontigCM002456.1:1395156..1395248 -
CM002456.1supercontigCM002456.1:1394987..1395048 -
CM002456.1supercontigCM002456.1:1394856..1394914 -
CM002456.1supercontigCM002456.1:1394794..1394812 -
Analyses
This CDS is derived from or has results from the following analyses
Analysis NameDate Performed
GO annotation for N. gaditana B312020-04-08
BLAST analysis for N. gaditana B-312020-04-07
InterPro analysis for N. gaditana B-312020-04-06
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
The following terms have been associated with this CDS:
Vocabulary: Cellular Component
TermDefinition
GO:0005622intracellular
Vocabulary: Molecular Function
TermDefinition
GO:0005515protein binding
Vocabulary: INTERPRO
TermDefinition
IPR000555JAMM/MPN+_dom
Homology
BLAST of EWM29503.1 vs. NCBI_GenBank
Match: gi|585112058|gb|EWM29503.1| (26s proteasome regulatory subunit n8 [Nannochloropsis gaditana])

HSP 1 Score: 346.665 bits (888), Expect = 7.572e-121
Identity = 169/169 (100.00%), Postives = 169/169 (100.00%), Query Frame = 0
Query:    1 MAPMGVEKDKKDGVGEDAPKNGDNKKPEEEATTIVTTANLAADELEVIVHPLVLLSTVDHYNRVAKDTRKRVVGVLLGTTWRGRIDITNSFAVPFEEDLKNPLVWYLDHNYLESMFYMFKKINAKERIVGFYSTGPKIKENDLQIDEVFRRFSSAPVFVIIDVRRRWRG 169
            MAPMGVEKDKKDGVGEDAPKNGDNKKPEEEATTIVTTANLAADELEVIVHPLVLLSTVDHYNRVAKDTRKRVVGVLLGTTWRGRIDITNSFAVPFEEDLKNPLVWYLDHNYLESMFYMFKKINAKERIVGFYSTGPKIKENDLQIDEVFRRFSSAPVFVIIDVRRRWRG
Sbjct:    1 MAPMGVEKDKKDGVGEDAPKNGDNKKPEEEATTIVTTANLAADELEVIVHPLVLLSTVDHYNRVAKDTRKRVVGVLLGTTWRGRIDITNSFAVPFEEDLKNPLVWYLDHNYLESMFYMFKKINAKERIVGFYSTGPKIKENDLQIDEVFRRFSSAPVFVIIDVRRRWRG 169          
BLAST of EWM29503.1 vs. NCBI_GenBank
Match: gi|298708582|emb|CBJ30666.1| (conserved unknown protein [Ectocarpus siliculosus])

HSP 1 Score: 203.371 bits (516), Expect = 2.327e-61
Identity = 90/124 (72.58%), Postives = 107/124 (86.29%), Query Frame = 0
Query:   46 EVIVHPLVLLSTVDHYNRVAKDTRKRVVGVLLGTTWRGRIDITNSFAVPFEEDLKNPLVWYLDHNYLESMFYMFKKINAKERIVGFYSTGPKIKENDLQIDEVFRRFSSAPVFVIIDVRRRWRG 169
            EV+VHPLVLLSTVDHYNRVA+D +KRVVGVLLG+ ++G +D+TNSFAVPFEED++NP +WYLDHN+LE MF MFKK+ AKERI GFYSTGPKI+ENDL I E+F+RF   PV+VIIDVR    G
Sbjct:   72 EVVVHPLVLLSTVDHYNRVARDAKKRVVGVLLGSKYKGTVDVTNSFAVPFEEDVRNPNIWYLDHNFLEGMFAMFKKVAAKERICGFYSTGPKIRENDLAIAELFKRFCPNPVYVIIDVRPDVEG 195          
BLAST of EWM29503.1 vs. NCBI_GenBank
Match: gi|301105527|ref|XP_002901847.1| (26S proteasome non-ATPase regulatory subunit 7 [Phytophthora infestans T30-4] >gi|262099185|gb|EEY57237.1| 26S proteasome non-ATPase regulatory subunit 7 [Phytophthora infestans T30-4])

HSP 1 Score: 198.364 bits (503), Expect = 4.080e-60
Identity = 89/124 (71.77%), Postives = 106/124 (85.48%), Query Frame = 0
Query:   46 EVIVHPLVLLSTVDHYNRVAKDTRKRVVGVLLGTTWRGRIDITNSFAVPFEEDLKNPLVWYLDHNYLESMFYMFKKINAKERIVGFYSTGPKIKENDLQIDEVFRRFSSAPVFVIIDVRRRWRG 169
            EV+ HPLVLLS VDHYNRVA+DT KRVVGVLLG+T+ G+ DITNSFAVPF+EDL+NP +WYLDH++LESM+ MFKKINAKERIVGFYS+GPKI++ DL ID++FRR+   PV VI DVR    G
Sbjct:   13 EVVTHPLVLLSIVDHYNRVARDTSKRVVGVLLGSTFHGKCDITNSFAVPFDEDLRNPGIWYLDHDFLESMYQMFKKINAKERIVGFYSSGPKIRKADLDIDDLFRRYCPNPVLVICDVRTNVEG 136          
BLAST of EWM29503.1 vs. NCBI_GenBank
Match: gi|953486571|emb|CEG49474.1| (26s proteasome non-atpase regulatory subunit 7 [Plasmopara halstedii])

HSP 1 Score: 197.208 bits (500), Expect = 9.009e-60
Identity = 94/138 (68.12%), Postives = 111/138 (80.43%), Query Frame = 0
Query:   32 TTIVTTANLAADELEVIVHPLVLLSTVDHYNRVAKDTRKRVVGVLLGTTWRGRIDITNSFAVPFEEDLKNPLVWYLDHNYLESMFYMFKKINAKERIVGFYSTGPKIKENDLQIDEVFRRFSSAPVFVIIDVRRRWRG 169
            T I TT  L     EV+ HPLVLLS VDHYNRVA+DT KRVVGVLLG+T+ G+ DITNSFAVPF+EDL+NP +WYLDH++LESM+ MFKKINAKERIVGFYS+GPKI++ DL ID++FRR+   PV VI DVR    G
Sbjct:    2 TEISTTRGLPE---EVVTHPLVLLSIVDHYNRVARDTSKRVVGVLLGSTFHGKCDITNSFAVPFDEDLRNPGIWYLDHDFLESMYQMFKKINAKERIVGFYSSGPKIRKADLDIDDLFRRYCPNPVLVICDVRPNVEG 136          
BLAST of EWM29503.1 vs. NCBI_GenBank
Match: gi|676394423|ref|XP_009040489.1| (hypothetical protein AURANDRAFT_32049 [Aureococcus anophagefferens] >gi|323448859|gb|EGB04752.1| hypothetical protein AURANDRAFT_32049 [Aureococcus anophagefferens])

HSP 1 Score: 197.208 bits (500), Expect = 2.509e-59
Identity = 87/130 (66.92%), Postives = 110/130 (84.62%), Query Frame = 0
Query:   35 VTTANLAADELEVIVHPLVLLSTVDHYNRVAKDTRKRVVGVLLGTTWRGRIDITNSFAVPFEEDLKNPLVWYLDHNYLESMFYMFKKINAKERIVGFYSTGPKIKENDLQIDEVFRRFSSAPVFVIIDVR 164
            V +   +  ++ V+VHPLVLLSTVDHYNRVA+DT+KRVVGVLLGT   G +D+TNSFAVPFEED KNP +WYLDHNYLE+M+ M+KK+NA+E +VG+YSTGPKIKEND++ID + + + + PVFVIIDVR
Sbjct:   14 VVSGEASGPKVTVVVHPLVLLSTVDHYNRVARDTKKRVVGVLLGTRSGGDVDVTNSFAVPFEEDSKNPAIWYLDHNYLETMYRMYKKVNAREVVVGYYSTGPKIKENDIKIDALMQDYCAQPVFVIIDVR 143          
BLAST of EWM29503.1 vs. NCBI_GenBank
Match: gi|570331037|gb|ETO78985.1| (hypothetical protein F444_06223 [Phytophthora parasitica P1976])

HSP 1 Score: 195.667 bits (496), Expect = 4.623e-59
Identity = 88/124 (70.97%), Postives = 106/124 (85.48%), Query Frame = 0
Query:   46 EVIVHPLVLLSTVDHYNRVAKDTRKRVVGVLLGTTWRGRIDITNSFAVPFEEDLKNPLVWYLDHNYLESMFYMFKKINAKERIVGFYSTGPKIKENDLQIDEVFRRFSSAPVFVIIDVRRRWRG 169
            EV+ HPLVLLS VDHYNRVA+DT KRVVGVLLG+T+ G+ DITNSFAVPF+EDL+NP +WYLDH++LE+M+ MFKKINAKERIVGFYS+GPKI++ DL ID++FRR+   PV VI DVR    G
Sbjct:   17 EVVTHPLVLLSIVDHYNRVARDTSKRVVGVLLGSTFHGKCDITNSFAVPFDEDLRNPGIWYLDHDFLENMYQMFKKINAKERIVGFYSSGPKIRKADLDIDDLFRRYCPNPVLVICDVRPNVEG 140          
BLAST of EWM29503.1 vs. NCBI_GenBank
Match: gi|675165437|ref|XP_008891603.1| (hypothetical protein PPTG_02295 [Phytophthora parasitica INRA-310] >gi|568022652|gb|ETL96716.1| hypothetical protein L917_05861 [Phytophthora parasitica] >gi|568107707|gb|ETN22331.1| hypothetical protein PPTG_02295 [Phytophthora parasitica INRA-310] >gi|570954754|gb|ETP20011.1| hypothetical protein F441_06174 [Phytophthora parasitica CJ01A1] >gi|570989798|gb|ETP47936.1| hypothetical protein F442_06197 [Phytophthora parasitica P10297] >gi|970639886|gb|KUF82691.1| 26S proteasome non-ATPase regulatory subunit 7 [Phytophthora nicotianae])

HSP 1 Score: 195.667 bits (496), Expect = 4.828e-59
Identity = 88/124 (70.97%), Postives = 106/124 (85.48%), Query Frame = 0
Query:   46 EVIVHPLVLLSTVDHYNRVAKDTRKRVVGVLLGTTWRGRIDITNSFAVPFEEDLKNPLVWYLDHNYLESMFYMFKKINAKERIVGFYSTGPKIKENDLQIDEVFRRFSSAPVFVIIDVRRRWRG 169
            EV+ HPLVLLS VDHYNRVA+DT KRVVGVLLG+T+ G+ DITNSFAVPF+EDL+NP +WYLDH++LE+M+ MFKKINAKERIVGFYS+GPKI++ DL ID++FRR+   PV VI DVR    G
Sbjct:   17 EVVTHPLVLLSIVDHYNRVARDTSKRVVGVLLGSTFHGKCDITNSFAVPFDEDLRNPGIWYLDHDFLENMYQMFKKINAKERIVGFYSSGPKIRKADLDIDDLFRRYCPNPVLVICDVRPNVEG 140          
BLAST of EWM29503.1 vs. NCBI_GenBank
Match: gi|566027343|gb|ETI50254.1| (hypothetical protein F443_06163 [Phytophthora parasitica P1569] >gi|567964653|gb|ETK90137.1| hypothetical protein L915_06040 [Phytophthora parasitica] >gi|567993355|gb|ETL43535.1| hypothetical protein L916_05977 [Phytophthora parasitica] >gi|568053013|gb|ETM49867.1| hypothetical protein L914_05982 [Phytophthora parasitica])

HSP 1 Score: 194.897 bits (494), Expect = 8.483e-59
Identity = 87/124 (70.16%), Postives = 106/124 (85.48%), Query Frame = 0
Query:   46 EVIVHPLVLLSTVDHYNRVAKDTRKRVVGVLLGTTWRGRIDITNSFAVPFEEDLKNPLVWYLDHNYLESMFYMFKKINAKERIVGFYSTGPKIKENDLQIDEVFRRFSSAPVFVIIDVRRRWRG 169
            EV+ HPLVLLS VDHYNRVA+DT KRVVGVLLG+T+ G+ DITNSFAVPF+EDL+NP +WYLDH++LE+M+ MFKKINAKER+VGFYS+GPKI++ DL ID++FRR+   PV VI DVR    G
Sbjct:   17 EVVTHPLVLLSIVDHYNRVARDTSKRVVGVLLGSTFHGKCDITNSFAVPFDEDLRNPGIWYLDHDFLENMYQMFKKINAKERVVGFYSSGPKIRKADLDIDDLFRRYCPNPVLVICDVRPNVEG 140          
BLAST of EWM29503.1 vs. NCBI_GenBank
Match: gi|1214709953|gb|OWZ21088.1| (26S proteasome non-ATPase regulatory protein [Phytophthora megakarya])

HSP 1 Score: 194.512 bits (493), Expect = 9.097e-59
Identity = 88/124 (70.97%), Postives = 106/124 (85.48%), Query Frame = 0
Query:   46 EVIVHPLVLLSTVDHYNRVAKDTRKRVVGVLLGTTWRGRIDITNSFAVPFEEDLKNPLVWYLDHNYLESMFYMFKKINAKERIVGFYSTGPKIKENDLQIDEVFRRFSSAPVFVIIDVRRRWRG 169
            EV+ HPLVLLS VDHYNRVA+DT KRVVGVLLG+T+ G+ DITNSFAVPF+EDL+NP +WYLDH++LE+M+ MFKKINAKERIVGFYS+GPKI++ DL ID++FRR+   PV VI DVR    G
Sbjct:   15 EVVTHPLVLLSIVDHYNRVARDTSKRVVGVLLGSTFHGKCDITNSFAVPFDEDLRNPGIWYLDHDFLENMYQMFKKINAKERIVGFYSSGPKIRKADLDIDDLFRRYCPNPVLVICDVRPNVDG 138          
BLAST of EWM29503.1 vs. NCBI_GenBank
Match: gi|1173957694|gb|OQS04177.1| (26S proteasome non-ATPase regulatory subunit 7 [Thraustotheca clavata])

HSP 1 Score: 192.971 bits (489), Expect = 2.543e-58
Identity = 87/124 (70.16%), Postives = 104/124 (83.87%), Query Frame = 0
Query:   46 EVIVHPLVLLSTVDHYNRVAKDTRKRVVGVLLGTTWRGRIDITNSFAVPFEEDLKNPLVWYLDHNYLESMFYMFKKINAKERIVGFYSTGPKIKENDLQIDEVFRRFSSAPVFVIIDVRRRWRG 169
            EV+ HPLVLLS VDHYNRVAKDT KRVVGVLLG+  +G+ D+TNSFAVPF+EDL++P +WYLDH++LE+MF MFKKI+A ERIVGFYSTGPKI+  DL +DE+FRR+ S PV VI DVR    G
Sbjct:    6 EVVTHPLVLLSIVDHYNRVAKDTSKRVVGVLLGSVSKGKCDVTNSFAVPFDEDLRHPTIWYLDHDFLENMFGMFKKISANERIVGFYSTGPKIRAADLALDELFRRYCSHPVLVICDVRPNVEG 129          
The following BLAST results are available for this feature:
BLAST of EWM29503.1 vs. NCBI_GenBank
Analysis Date: 2020-04-07 (BLAST analysis for N. gaditana B-31)
Total hits: 10
Match NameE-valueIdentityDescription
gi|585112058|gb|EWM29503.1|7.572e-121100.0026s proteasome regulatory subunit n8 [Nannochlorop... [more]
gi|298708582|emb|CBJ30666.1|2.327e-6172.58conserved unknown protein [Ectocarpus siliculosus][more]
gi|301105527|ref|XP_002901847.1|4.080e-6071.7726S proteasome non-ATPase regulatory subunit 7 [Ph... [more]
gi|953486571|emb|CEG49474.1|9.009e-6068.1226s proteasome non-atpase regulatory subunit 7 [Pl... [more]
gi|676394423|ref|XP_009040489.1|2.509e-5966.92hypothetical protein AURANDRAFT_32049 [Aureococcus... [more]
gi|570331037|gb|ETO78985.1|4.623e-5970.97hypothetical protein F444_06223 [Phytophthora para... [more]
gi|675165437|ref|XP_008891603.1|4.828e-5970.97hypothetical protein PPTG_02295 [Phytophthora para... [more]
gi|566027343|gb|ETI50254.1|8.483e-5970.16hypothetical protein F443_06163 [Phytophthora para... [more]
gi|1214709953|gb|OWZ21088.1|9.097e-5970.9726S proteasome non-ATPase regulatory protein [Phyt... [more]
gi|1173957694|gb|OQS04177.1|2.543e-5870.1626S proteasome non-ATPase regulatory subunit 7 [Th... [more]
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Relationships

This CDS is a part of the following mRNA feature(s):

Feature NameUnique NameSpeciesType
rna1171rna1171Nannochloropsis gaditana (N. gaditana B-31)mRNA


Sequences
Synonyms
Publications