rna117, rna117 (mRNA) Nannochloropsis gaditana | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	rna117
Unique Name	rna117
Type	mRNA
Organism	Nannochloropsis gaditana (N. gaditana B-31)
Sequence length	2778
Alignment location	CM002455.1:311761..314540 +

Link to JBrowse

Properties


Property Name	Value
Product	hypothetical protein
Orig transcript id	gnl\|cribi\|Naga_100033g43.8433.mrna
Orig protein id	gnl\|cribi\|Naga_100033g43.8433
Gbkey	mRNA

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
CM002455.1	supercontig	CM002455.1:311761..314540 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. gaditana B-31	2014-02-18

Annotated Terms

Homology

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
Naga_100033g43	gene114	Nannochloropsis gaditana (N. gaditana B-31)	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
rna117	rna117-protein	Nannochloropsis gaditana (N. gaditana B-31)	polypeptide

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
EWM30594.1	cds117	Nannochloropsis gaditana (N. gaditana B-31)	CDS

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at CM002455.1:311761..314540+
coding sequence from alignment at CM002455.1:311761..314540+

mRNA sequence

>rna117 ID=rna117|Name=rna117|organism=Nannochloropsis gaditana|type=mRNA|length=2778bp
ATGAGGAGTGATGATAACAATGATGCCTCTGGACTCGGCGCAGGTTTTAC
TTTCCTGCAGCTTTCCCTGTTCACGGCCGCCTCGAGTCTAGTTGTCTTCC
TACGTCACAGGAAACAGCATCTCCGGCGTGAACATGCTCTTCCCTCTCCT
CCAATCACCGAAAGTCCTGGGAAGAAGACGAAAGCATCCCCATCCACGCC
ACGTCATGCCGGGCAGACAATGCGCCCCGTTTCGGCGTCCTCGCCAGTTG
CCCCCTCCCCTTGCACCCCCTGCCTTCCTCGCCACTCAGGTCGGCATGCT
TCAAAACATTCGCGCCATGTCAGCCGCTGCCTGAGCACAGGACCCGAACG
CGACGTGCAAGACCGGGTGTCGCATGCGTTGGACACATGCCCGGGGATGG
AGGAGGTGGGCCGACGCCGTATTGAGTTGCTGGTGCATAACGTTTCGCAC
AAGGATATGGTGCTTTCCCTTGCTACATTACCGGGCCTGGGTCCTTCCAG
GACGCCCTCGGAAGAGCTATTGAGTCGCACGTCGTCCACTTCATCGACCG
TGCTCCGGGTGGGGCCACTGGCGCCGTTCACGGCGACACACCGGCGTCGC
ACGAGCAGCAGCGCGGTGATGCAGGAGGATCTAGTCCTGTGTCGGCCTAA
ATTTTCACTCTTCCAGCCCGTGAGTGACGCCATCCTGCAAGTCGTCCACC
ACCACATTTGTCCTTCTGTCAAAGTTCCCGTCTATGTCCGTGAGCACAAC
CCCTCTGCTCCCGCCGCCTTGCCAGGCCCCCATTCCTCTTCTGCATCCTC
CTCGGACGCCCCCTCCTTGCGAAGAGGGGACATGAGACACGAACGCTCCT
ACACTCTACGCCGCCAGTCCCTGACAACCCAGCCGGAACTACCGGTGGGC
TTTGACCTGAGCGAGTGCCCTCTGCCTGTCCAAGATCTGACCGACTTCCG
CCTGCGTCGAGACGACCTAGGGAAGCTTTACCCCCCCCTCCCCTCTCCAC
GCCTGCAGCCTCCCCACCCGTCACCGGGCGGCCATGACCCGGCCGTGACA
GAGAACGCGGGGGGGATGGCGGCAGCCAAGAATGATTCTGTGGACCGAGA
CCCCTTAGCCGGCCGCTCCTCCCCTCGCTCCCCGGCCCCCCTGCAGGACG
CCGTGGGGATCGACGGCGTCTACTTCCCACTCCTCGCCAACGTACTACCT
ACCTGGCGCAAGACTGTCGCAGCAGGGGTGGGGCCGGGGGGGGAGGAGGA
AGTGTTCAAGATCATCTTTCTCGTCAGCGGGGTGGGTATGCCAAGGGATC
CGACCAGCAGCCGGGAAGGGAATTCTACCCAAGGCACCGCCGCCTTGCTG
GAGGAATGGATGCAACGAAACTACCCGGACGTACGGGTGGTGCGGGTCCA
CAGCACCACCAATATTTTCCGCTACGACGAGAACATTGCCTTCGTGAAGA
ACGAGCTGCTCCCATTGATCGAGCATTACCGGGACGGGGCTGCTGAGCGC
TGGGGTACATCCTGGAGGCACAAGTACCGTCTGACCATCAGTTTCGCCGA
CGGGTCCCCGGCTCGCATCTCGGCCATCAACGCCGCCTTGCGTCCCTACC
GGCCCTCTTTCATGCATACCTGGGAGTTGAAGACATTCTGGCACCATGCT
AAAATGTGCCTGGAGGATGTGGAGGTCTTGGCCTTCGAGGACATCGACAC
GGCTCCGCCCGTCCCCCTTTCCCATGCAGACGCCCGTGCCCGATTGGTCG
CCCAGGAGATGCTTCGATACAAGGAAGAGGTTCTCCTCCACTACCGGCAG
GGCCTGTGTGCGGATCTAAGCACGTTTTGGCTCCGAAAAACTGAAAAACC
CGTCTTGGCCGTTTTGTTGGTGCAGAAAGACAGGGCCCGGCCCCTGCTGT
ACCGAGGCTGCAACATGGAGGTGAGCATGCCCACGGGCTCGCTCTGCGCG
GAGAGAAACGCGATCGGGTCCGCCCTGGCGGCCGACTTGACGTTGAAACG
GAGGGACTTGAAGGTGGTGGCTGTCTTGAGCGTCTCCTTTGGGAAAAACG
GGAACACAGGCGGGGGAGGGGGTGGAGGGGACGGAGGGCGAAAGCCAGAA
GGGACAGCAAAGGCGTTGGATGCGGTCTTTGCCTCGATCGACACGGCCCC
TCGTGTGGCCTCACAAACGACGGATCGCAACCACAGCTACAGCGACTCCT
GCACCGGCCACTCTATCGGGAATGCCCAGCCCCGAGGACTGCTAGGGCCT
AGAAAAGGGGATGCGGGCGCTTCTGAACGGACAGGGGGGTCGATGATGGC
CTCCGTTGGCGATCAGGAGGGCCCTTGGACACCCTCGTCTCGCCGGACGG
GGGCGCAGGAAGAAGTCTTTGATGGACTGTCGCCGCCTCGAACCACGATC
ATCCGCTCCTACTCGGTCAAGGACCTGAACGGATGTGGGCAAGACGGCGC
CTTTGGTAAGCCGTCGCCGGCGGAATGCCGTGGTCGTCCACATGCGTCGA
GCATGGACTCTCTGGATCCAAAATCGTCCAAGAGCACCAGCCCCATCATC
CCCTTGTCGAATCTCAGGGTAGACGGAGGGGGCCGTGATCAACAGGGTCC
GGGGGCTATGACAATTAGGGTCGAGGCGGATGATTTGAACCCACTCAAAC
CATGTGGTGCATGCATGGAGTGGCTGAAGAAGATCGCGGAGAAGAATCCT
GAGTTTCGCGTAGCCACTTTCACGGACGAGGCCTGCCGAGGCATTTACAC
CGAGTTTGTCTCCACCACATCAACATAG

protein sequence of rna117

>rna117-protein ID=rna117-protein|Name=rna117|organism=Nannochloropsis gaditana|type=polypeptide|length=541bp
MIADGKRRDIIALPLHSLNITPPTTCSYPTANAPGKAMEGAEDPTLGDIV
ASVMLFDRQTSVKHNSRGNARLAEAASENDFQKGAQKAVEAIAAPKLPKA
KKGASVKISCDGSAVDKDRGVDGGDGGEGSVRPTKSKLACKISPEEAPNL
KNATTLRRIEAFPTMKEPLVSSVDHGTALVAAVSRHRTPLGTAVPPDDDS
NEKRASTCLCGAHATVTVEARTWTGINKQGGVGRLTKDNGDGTFNVKYLL
GGSERRVDRCYIQCNAVAGADPGEAGKRAVKGPEFFVPQADIPVSSGAEA
ARGSARRPRNPRAEPEEQTEQGEKQAEKQEKERRGKEDARGEDWTTSGTK
PAKGRGRADGTGPSGQKRSLVQANQPQATSHPATKARGPMHKSESRKMAP
PPPQGGGSGTCMTSKGDPSAVAERAASSSPPRDASVQADAPIHPQARQER
GVQDVGEAVPSEHAAVPPPAADTRFLDFKRKLSQAVIENVGGLDQISLEQ
LKGAVVGEGQGCFSGEEMDTFLQRLEADNHLMLVDQTVYIV

mRNA from alignment at CM002455.1:311761..314540+

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>rna117 ID=rna117|Name=rna117|organism=Nannochloropsis gaditana|type=mRNA|length=2780bp|location=Sequence derived from alignment at CM002455.1:311761..314540+ (Nannochloropsis gaditana)
CGTGGCGTGGATGGGGATGctttcgtcttcttcccagGACTTTCGGTgat
tggaggagagggaagagcatGTTCACGCCGGAGATGCTGTTTCCTGTGAC
GTAGGAAGACAACTAGACTCGAGGCGGCCGTGAACAGGGAAAGCTGCAGG
AAAGTAAAACCTGCGCCGAGTCCAGAGGCATCATTGTTATCATCACTCCT
CATGTCTTCTTCGGGCCATGTGCTGTCATTCTTGCGGGTGCTTTCCCTTT
CTGTGCGACAGTTTTTTGGAAGGGGGGTACAAAAGGGTGAGGAGATGCGC
CTCGTCTAGAGCTGATGAATCACGGTTCGTTTGAGCAAGTGACGTTTTGA
AGAGAGGCTGCAAAGCGAATGGATGTCATCGTATGCATACATCACGGCTA
TCTTGCGCGGTACGTGGGTGCTGAGAGGCGCTGGGCTGCGATTTGTGTAC
GTGGTAATGCCGGTATAACCCGAACCAGCTGAACCAAACCAACATCAAGC
AAATTTGATGAGTAGACCGGGAGGTGAAGTAAAGTTCGTGATAAGATAGG
AGGGCGCAACTGCCCTTTGGCTTAGAGCCCACTTTTTCGTTTGTGTGTGT
GACCAGGAAGCGGGTCGTCAGTGACAATTTTGACACTTTGCAGGTCTGTT
GCGGCCTCGGGATGATAGCTGATGGCAAGCGAAGAGACATCATTGCTCTC
CCGTTGCATTCTTTAAACATAACCCCACCCACGACATGTTCTTATCCCAC
CGCTAACGCCCCAGGGAAGGCAATGGAAGGTGCAGAAGATCCAACATTGG
GCGACATAGTCGCGTCCGTCATGTTGTTTGACAGACAGACATCCGTGAAG
CACAATTCGCGGGGAAATGCACGGCTTGCTGAAGCCGCCTCGGAGAATGA
TTTTCAAAAGGGAGCTCAAAAAGCGGTGGAAGCGATCGCAGCTCCAAAAC
TTCCCAAGGCAAAAAAAGGGGCGAGCGTTAAAATATCCTGTGATGGTTCG
GCTGTAGATAAAGACCGTGGGGTGGATGGGGGGGACGGTGGGGAAGGGTC
CGTGCGGCCAACCAAGTCAAAGCTAGCTTGTAAGATATCACCAGAGGAAG
CCCCAAACCTGAAGAATGCGACAACATTACGGCGGATTGAAGCCTTCCCA
ACAATGAAGGAGCCTCTGGTCTCCAGTGTGGATCACGGAACCGCTCTTGT
GGCCGCTGTCAGCCGCCACAGGACTCCACTGGGCACGGCGGTGCCCCCAG
ATGATGACTCGAACGAGAAGAGGGCATCCACATGCCTGTGCGGGGCCCAC
GCCACCGTCACGGTCGAGGCCCGAACGTGGACGGGAATCAATAAACAAGG
TGGCGTGGGCCGTCTGACGAAGGATAACGGGGACGGGACTTTCAACGTCA
AGTACTTGTTGGGAGGCAGTGAGAGAAGGGTGGATCGGTGTTACATCCAA
TGCAACGCCGTTGCAGGCGCGGATCCCGGAGAGGCCGGAAAACGCGCAGT
CAAAGGGCCCGAATTCTTTGTTCCTCAGGCAGATATCCCTGTGTCATCAG
GGGCGGAGGCTGCGCGCGGTTCGGCCCGGCGGCCCCGAAATCCGAGGGCA
GAGCCCGAAGAGCAGACGGAGCAGGGTGAGAAACaggcggagaagcagga
gaaggaaaggaggggaaaggaggacgctCGGGGGGAGGACTGGACGACGA
GTGGTACGAAGCCCGCgaagggcaggggcagggccgATGGGACGGGGCCC
TCTGGCCAGAAGCGCTCTCTCGTGCAAGCCAACCAACCCCAGGCGACGTC
CCACCCGGCCACCAAGGCACGGGGTCCAATGCACAAGTCTGAGTCCAGGA
AGATggcgcctccgccgccccaaGGGGGTGGATCGGGGACATGTATGACG
AGCAAGGGAGACCCATCGGCTGTGGCGGAGAGggccgcgtcttcctcccc
accaagAGACGCGAGCGTCCAAGCTGACGCTCCGATCCACCCACAAGCAc
gacaagaaagaggggtCCAAGACGTAGGGGAGGCGGTGCCCTCGGAGCAC
GCCGCCGTGCCACCACCCGCAGCGGATACCCGGTTCCTGGATTTCAAGAG
AAAGCTTTCCCAGGCGGTGATTGAAAATGTAGGCGGCTTGGATCAGATTT
CGTTAGAGCAGTTgaagggggcggtggtgggggagggtcaGGGGTGCTTC
TCCGGCGAGGAGATGGATACGTTTTTGCAGCGCTTGGAAGCAGACAACCA
CTTGATGCTTGTGGACCAAACGGTTTACATCGTCTAGGAAGGCCTGGGAA
AAGGACCTTCTTAgttcgggggaggagagactcAGGATCGTGGTGCCACT
AAGGGATGGATACCAAGGGGAAGTGACAGCGGGGCGGCAAGACTTGCGTG
CCTCAAGTGTGTGATACGGTGTGGATatggggacgaggagaaaggacagT
GCGGGGTGACAAATGACCAGCAATTCACGGCAGTGAAAATGCAGCCATTC
GTAGATAAATTGAAAGATTGACTACAAGCTTCAAGAAACGTTCCATGAAC
TACATCGAAGAGAATGTTGGTGCGCTATGTTACATTGccccgtctccttc
gtcccaTCTCACGTGAGTACCAGATGACCCTCCTCGTACTTCAATGCACC
TATTTCCAGCAGCACCCGGTCCACGAAGGATTTCAGTTCAGGATACTTGT
TCAACTCCTCGCTCAGTCTCTGCGCCCGGTGCCTATCGCTGTCGATATCC
GTCAAGAGACTACACAAAGTGGAGTCTTCC

Coding sequence (CDS) from alignment at CM002455.1:311761..314540+

>rna117 ID=rna117|Name=rna117|organism=Nannochloropsis gaditana|type=CDS|length=1626bp|location=Sequence derived from alignment at CM002455.1:311761..314540+ (Nannochloropsis gaditana)
ATGATAGCTGATGGCAAGCGAAGAGACATCATTGCTCTCCCGTTGCATTC
TTTAAACATAACCCCACCCACGACATGTTCTTATCCCACCGCTAACGCCC
CAGGGAAGGCAATGGAAGGTGCAGAAGATCCAACATTGGGCGACATAGTC
GCGTCCGTCATGTTGTTTGACAGACAGACATCCGTGAAGCACAATTCGCG
GGGAAATGCACGGCTTGCTGAAGCCGCCTCGGAGAATGATTTTCAAAAGG
GAGCTCAAAAAGCGGTGGAAGCGATCGCAGCTCCAAAACTTCCCAAGGCA
AAAAAAGGGGCGAGCGTTAAAATATCCTGTGATGGTTCGGCTGTAGATAA
AGACCGTGGGGTGGATGGGGGGGACGGTGGGGAAGGGTCCGTGCGGCCAA
CCAAGTCAAAGCTAGCTTGTAAGATATCACCAGAGGAAGCCCCAAACCTG
AAGAATGCGACAACATTACGGCGGATTGAAGCCTTCCCAACAATGAAGGA
GCCTCTGGTCTCCAGTGTGGATCACGGAACCGCTCTTGTGGCCGCTGTCA
GCCGCCACAGGACTCCACTGGGCACGGCGGTGCCCCCAGATGATGACTCG
AACGAGAAGAGGGCATCCACATGCCTGTGCGGGGCCCACGCCACCGTCAC
GGTCGAGGCCCGAACGTGGACGGGAATCAATAAACAAGGTGGCGTGGGCC
GTCTGACGAAGGATAACGGGGACGGGACTTTCAACGTCAAGTACTTGTTG
GGAGGCAGTGAGAGAAGGGTGGATCGGTGTTACATCCAATGCAACGCCGT
TGCAGGCGCGGATCCCGGAGAGGCCGGAAAACGCGCAGTCAAAGGGCCCG
AATTCTTTGTTCCTCAGGCAGATATCCCTGTGTCATCAGGGGCGGAGGCT
GCGCGCGGTTCGGCCCGGCGGCCCCGAAATCCGAGGGCAGAGCCCGAAGA
GCAGACGGAGCAGGGTGAGAAACaggcggagaagcaggagaaggaaagga
ggggaaaggaggacgctCGGGGGGAGGACTGGACGACGAGTGGTACGAAG
CCCGCgaagggcaggggcagggccgATGGGACGGGGCCCTCTGGCCAGAA
GCGCTCTCTCGTGCAAGCCAACCAACCCCAGGCGACGTCCCACCCGGCCA
CCAAGGCACGGGGTCCAATGCACAAGTCTGAGTCCAGGAAGATggcgcct
ccgccgccccaaGGGGGTGGATCGGGGACATGTATGACGAGCAAGGGAGA
CCCATCGGCTGTGGCGGAGAGggccgcgtcttcctccccaccaagAGACG
CGAGCGTCCAAGCTGACGCTCCGATCCACCCACAAGCAcgacaagaaaga
ggggtCCAAGACGTAGGGGAGGCGGTGCCCTCGGAGCACGCCGCCGTGCC
ACCACCCGCAGCGGATACCCGGTTCCTGGATTTCAAGAGAAAGCTTTCCC
AGGCGGTGATTGAAAATGTAGGCGGCTTGGATCAGATTTCGTTAGAGCAG
TTgaagggggcggtggtgggggagggtcaGGGGTGCTTCTCCGGCGAGGA
GATGGATACGTTTTTGCAGCGCTTGGAAGCAGACAACCACTTGATGCTTG
TGGACCAAACGGTTTACATCGTCTAG

Synonyms

Publications