EWM30594.1, cds117 (CDS) Nannochloropsis gaditana

Overview
NameEWM30594.1
Unique Namecds117
TypeCDS
OrganismNannochloropsis gaditana (N. gaditana B-31)
Alignment locationCM002455.1:312422..314047 +

Link to JBrowse

Properties
Property NameValue
Protein idEWM30594.1
Producthypothetical protein
Orig transcript idgnl|cribi|Naga_100033g43.8433.mrna
GbkeyCDS
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
CM002455.1supercontigCM002455.1:312422..314047 +
Analyses
This CDS is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST analysis for N. gaditana B-312020-04-07
InterPro analysis for N. gaditana B-312020-04-06
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
Homology
BLAST of EWM30594.1 vs. NCBI_GenBank
Match: gi|585113261|gb|EWM30594.1| (hypothetical protein Naga_100033g43 [Nannochloropsis gaditana])

HSP 1 Score: 1102.81 bits (2851), Expect = 0.000e+0
Identity = 541/541 (100.00%), Postives = 541/541 (100.00%), Query Frame = 0
Query:    1 MIADGKRRDIIALPLHSLNITPPTTCSYPTANAPGKAMEGAEDPTLGDIVASVMLFDRQTSVKHNSRGNARLAEAASENDFQKGAQKAVEAIAAPKLPKAKKGASVKISCDGSAVDKDRGVDGGDGGEGSVRPTKSKLACKISPEEAPNLKNATTLRRIEAFPTMKEPLVSSVDHGTALVAAVSRHRTPLGTAVPPDDDSNEKRASTCLCGAHATVTVEARTWTGINKQGGVGRLTKDNGDGTFNVKYLLGGSERRVDRCYIQCNAVAGADPGEAGKRAVKGPEFFVPQADIPVSSGAEAARGSARRPRNPRAEPEEQTEQGEKQAEKQEKERRGKEDARGEDWTTSGTKPAKGRGRADGTGPSGQKRSLVQANQPQATSHPATKARGPMHKSESRKMAPPPPQGGGSGTCMTSKGDPSAVAERAASSSPPRDASVQADAPIHPQARQERGVQDVGEAVPSEHAAVPPPAADTRFLDFKRKLSQAVIENVGGLDQISLEQLKGAVVGEGQGCFSGEEMDTFLQRLEADNHLMLVDQTVYIV 541
            MIADGKRRDIIALPLHSLNITPPTTCSYPTANAPGKAMEGAEDPTLGDIVASVMLFDRQTSVKHNSRGNARLAEAASENDFQKGAQKAVEAIAAPKLPKAKKGASVKISCDGSAVDKDRGVDGGDGGEGSVRPTKSKLACKISPEEAPNLKNATTLRRIEAFPTMKEPLVSSVDHGTALVAAVSRHRTPLGTAVPPDDDSNEKRASTCLCGAHATVTVEARTWTGINKQGGVGRLTKDNGDGTFNVKYLLGGSERRVDRCYIQCNAVAGADPGEAGKRAVKGPEFFVPQADIPVSSGAEAARGSARRPRNPRAEPEEQTEQGEKQAEKQEKERRGKEDARGEDWTTSGTKPAKGRGRADGTGPSGQKRSLVQANQPQATSHPATKARGPMHKSESRKMAPPPPQGGGSGTCMTSKGDPSAVAERAASSSPPRDASVQADAPIHPQARQERGVQDVGEAVPSEHAAVPPPAADTRFLDFKRKLSQAVIENVGGLDQISLEQLKGAVVGEGQGCFSGEEMDTFLQRLEADNHLMLVDQTVYIV
Sbjct:    1 MIADGKRRDIIALPLHSLNITPPTTCSYPTANAPGKAMEGAEDPTLGDIVASVMLFDRQTSVKHNSRGNARLAEAASENDFQKGAQKAVEAIAAPKLPKAKKGASVKISCDGSAVDKDRGVDGGDGGEGSVRPTKSKLACKISPEEAPNLKNATTLRRIEAFPTMKEPLVSSVDHGTALVAAVSRHRTPLGTAVPPDDDSNEKRASTCLCGAHATVTVEARTWTGINKQGGVGRLTKDNGDGTFNVKYLLGGSERRVDRCYIQCNAVAGADPGEAGKRAVKGPEFFVPQADIPVSSGAEAARGSARRPRNPRAEPEEQTEQGEKQAEKQEKERRGKEDARGEDWTTSGTKPAKGRGRADGTGPSGQKRSLVQANQPQATSHPATKARGPMHKSESRKMAPPPPQGGGSGTCMTSKGDPSAVAERAASSSPPRDASVQADAPIHPQARQERGVQDVGEAVPSEHAAVPPPAADTRFLDFKRKLSQAVIENVGGLDQISLEQLKGAVVGEGQGCFSGEEMDTFLQRLEADNHLMLVDQTVYIV 541          
BLAST of EWM30594.1 vs. NCBI_GenBank
Match: gi|813171852|ref|XP_012204681.1| (hypothetical protein SPRG_10145 [Saprolegnia parasitica CBS 223.65] >gi|641530491|gb|KDO24613.1| hypothetical protein SPRG_10145 [Saprolegnia parasitica CBS 223.65])

HSP 1 Score: 70.8626 bits (172), Expect = 4.034e-9
Identity = 34/63 (53.97%), Postives = 42/63 (66.67%), Query Frame = 0
Query:  216 VTVEARTWTGINKQGGVGRLTKDNGDGTFNVKYLLGGSERRVDRCYIQCNAVAGADPGEAGKR 278
            V V  RTW G+NK GG GR+T  N DG+ NVKY+LGG ++ V R +I   AVA A P +A KR
Sbjct:  997 VHVLPRTWAGMNKLGGTGRITSLNDDGSVNVKYVLGGQDKNVRREFITSPAVAIATPDDANKR 1059          
BLAST of EWM30594.1 vs. NCBI_GenBank
Match: gi|298706998|emb|CBJ29806.1| (hypothetical protein Esi_0162_0021 [Ectocarpus siliculosus])

HSP 1 Score: 68.5514 bits (166), Expect = 1.654e-8
Identity = 35/74 (47.30%), Postives = 42/74 (56.76%), Query Frame = 0
Query:  208 CLC-----GAHATVTVEARTWTGINKQGGVGRLTKDN-------GD----GTFNVKYLLGGSERRVDRCYIQCN 265
            C+C     GAH TV VE R W G NK GG+GR+TK         G+      F++KYLLGGSE+RV   YI C 
Sbjct:  315 CMCPQGTDGAHKTVDVERRCWPGSNKPGGIGRITKKYTAEEEVCGEMVQMSYFDIKYLLGGSEKRVQETYISCT 388          
BLAST of EWM30594.1 vs. NCBI_GenBank
Match: gi|1072231196|gb|OEU15929.1| (hypothetical protein FRACYDRAFT_240624 [Fragilariopsis cylindrus CCMP1102])

HSP 1 Score: 68.5514 bits (166), Expect = 2.223e-8
Identity = 28/57 (49.12%), Postives = 38/57 (66.67%), Query Frame = 0
Query:  206 STCLCGAHATVTVEARTWTGINKQGGVGRLTKDNGDGTFNVKYLLGGSERRVDRCYI 262
            +T +      V V +RTW G+NK GGVGR+T  N DGT+NV Y+LGG E  V+ C++
Sbjct: 1026 TTAIWSKGTIVNVASRTWPGVNKHGGVGRITAMNTDGTYNVSYVLGGKESNVEVCFM 1082          
BLAST of EWM30594.1 vs. NCBI_GenBank
Match: gi|1173956957|gb|OQS03604.1| (hypothetical protein THRCLA_04076 [Thraustotheca clavata])

HSP 1 Score: 67.781 bits (164), Expect = 2.537e-8
Identity = 37/79 (46.84%), Postives = 45/79 (56.96%), Query Frame = 0
Query:  198 DDSNEKRASTCLCGAHATVTVEARTWTGINKQGGVGRLTKDNGDGTFNVKYLLGGSERRVDRCYIQCNAVAGADPGEAG 276
            D SNE +A+    G    V V ARTW GINK GG   + + N DGT+NVKY+LGG E  VD  YI   ++ G D   A 
Sbjct:  136 DTSNENKAAIEFTGGQV-VQVAARTWPGINKLGGTAWIVERNEDGTYNVKYVLGGRESHVDPAYI---SLVGQDCANAS 210          
BLAST of EWM30594.1 vs. NCBI_GenBank
Match: gi|1173951283|gb|OQR99182.1| (hypothetical protein ACHHYP_07214 [Achlya hypogyna])

HSP 1 Score: 66.6254 bits (161), Expect = 6.564e-8
Identity = 30/58 (51.72%), Postives = 36/58 (62.07%), Query Frame = 0
Query:  215 TVTVEARTWTGINKQGGVGRLTKDNGDGTFNVKYLLGGSERRVDRCYIQCNAVAGADP 272
             V V ARTW GINK GG G +   N DGT+NVKY+LGG E  +D  YI   A + + P
Sbjct:  157 VVQVSARTWPGINKLGGTGWIVGRNDDGTYNVKYVLGGKENHIDPMYISVEAESNSSP 214          
BLAST of EWM30594.1 vs. NCBI_GenBank
Match: gi|669145158|ref|XP_008608141.1| (hypothetical protein, variant [Saprolegnia diclina VS20] >gi|530740307|gb|EQC38549.1| hypothetical protein, variant [Saprolegnia diclina VS20])

HSP 1 Score: 65.4698 bits (158), Expect = 7.891e-8
Identity = 29/49 (59.18%), Postives = 34/49 (69.39%), Query Frame = 0
Query:  215 TVTVEARTWTGINKQGGVGRLTKDNGDGTFNVKYLLGGSERRVDRCYIQ 263
             V V ARTW GINK GG   + + N DGT+NVKY+LGG E RVD  YI+
Sbjct:  161 VVEVSARTWPGINKLGGTAWIVRRNDDGTYNVKYVLGGREGRVDPVYIR 209          
BLAST of EWM30594.1 vs. NCBI_GenBank
Match: gi|813156258|ref|XP_012201478.1| (hypothetical protein SPRG_07296 [Saprolegnia parasitica CBS 223.65] >gi|641533693|gb|KDO27666.1| hypothetical protein SPRG_07296 [Saprolegnia parasitica CBS 223.65])

HSP 1 Score: 65.855 bits (159), Expect = 9.365e-8
Identity = 29/49 (59.18%), Postives = 34/49 (69.39%), Query Frame = 0
Query:  215 TVTVEARTWTGINKQGGVGRLTKDNGDGTFNVKYLLGGSERRVDRCYIQ 263
             V V ARTW GINK GG   + + N DGT+NVKY+LGG E RVD  YI+
Sbjct:  159 VVEVSARTWPGINKLGGTAWIVRRNDDGTYNVKYVLGGREGRVDPAYIR 207          
BLAST of EWM30594.1 vs. NCBI_GenBank
Match: gi|669145156|ref|XP_008608140.1| (hypothetical protein SDRG_04254 [Saprolegnia diclina VS20] >gi|530740306|gb|EQC38548.1| hypothetical protein SDRG_04254 [Saprolegnia diclina VS20])

HSP 1 Score: 65.855 bits (159), Expect = 9.977e-8
Identity = 29/49 (59.18%), Postives = 34/49 (69.39%), Query Frame = 0
Query:  215 TVTVEARTWTGINKQGGVGRLTKDNGDGTFNVKYLLGGSERRVDRCYIQ 263
             V V ARTW GINK GG   + + N DGT+NVKY+LGG E RVD  YI+
Sbjct:  161 VVEVSARTWPGINKLGGTAWIVRRNDDGTYNVKYVLGGREGRVDPVYIR 209          
BLAST of EWM30594.1 vs. NCBI_GenBank
Match: gi|397622874|gb|EJK66816.1| (hypothetical protein THAOC_12222, partial [Thalassiosira oceanica])

HSP 1 Score: 64.3142 bits (155), Expect = 3.798e-7
Identity = 28/57 (49.12%), Postives = 40/57 (70.18%), Query Frame = 0
Query:  214 ATVTVEARTWTGINKQGGVGRLTK-----DNGDGTFNVKYLLGGSERRVDRCYIQCN 265
            + V V++RTW GINK GGVGR+T+     D+    +++KY+LGGSE+ VD CY+  N
Sbjct:  197 SIVCVQSRTWPGINKPGGVGRVTRVHAANDSNVIKYDIKYILGGSEKNVDACYVTLN 253          
The following BLAST results are available for this feature:
BLAST of EWM30594.1 vs. NCBI_GenBank
Analysis Date: 2020-04-07 (BLAST analysis for N. gaditana B-31)
Total hits: 10
Match NameE-valueIdentityDescription
gi|585113261|gb|EWM30594.1|0.000e+0100.00hypothetical protein Naga_100033g43 [Nannochlorops... [more]
gi|813171852|ref|XP_012204681.1|4.034e-953.97hypothetical protein SPRG_10145 [Saprolegnia paras... [more]
gi|298706998|emb|CBJ29806.1|1.654e-847.30hypothetical protein Esi_0162_0021 [Ectocarpus sil... [more]
gi|1072231196|gb|OEU15929.1|2.223e-849.12hypothetical protein FRACYDRAFT_240624 [Fragilario... [more]
gi|1173956957|gb|OQS03604.1|2.537e-846.84hypothetical protein THRCLA_04076 [Thraustotheca c... [more]
gi|1173951283|gb|OQR99182.1|6.564e-851.72hypothetical protein ACHHYP_07214 [Achlya hypogyna... [more]
gi|669145158|ref|XP_008608141.1|7.891e-859.18hypothetical protein, variant [Saprolegnia diclina... [more]
gi|813156258|ref|XP_012201478.1|9.365e-859.18hypothetical protein SPRG_07296 [Saprolegnia paras... [more]
gi|669145156|ref|XP_008608140.1|9.977e-859.18hypothetical protein SDRG_04254 [Saprolegnia dicli... [more]
gi|397622874|gb|EJK66816.1|3.798e-749.12hypothetical protein THAOC_12222, partial [Thalass... [more]
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Relationships

This CDS is a part of the following mRNA feature(s):

Feature NameUnique NameSpeciesType
rna117rna117Nannochloropsis gaditana (N. gaditana B-31)mRNA


Sequences
Synonyms
Publications