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Properties
| Property Name | Value |
|---|
| Product | hypothetical protein |
| Orig transcript id | gnl|cribi|Naga_100601g2.6983.mrna |
| Orig protein id | gnl|cribi|Naga_100601g2.6983 |
| Gbkey | mRNA |
Alignments
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| CM002456.1 | supercontig | CM002456.1:1386497..1389234 - |
Analyses
This mRNA is derived from or has results from the following analyses
Relationships
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
mRNA sequence >rna1169 ID=rna1169|Name=rna1169|organism=Nannochloropsis gaditana|type=mRNA|length=1606bp
AAGCCTCGATACCATGCCATGTGAATTGCTGTACACTGCGCTTGTGGCGC
TTTCGACCCGCACTTTTGACATTCGCGAAAAGAATGTGGCGTGTTGCAGG
CGTTGTGTTGTGCTTGTGGATTGGAAAGCGTGTCATCGTGTCAGAAAACG
CCTGGTTTGTCTTTTTTTTCCATGGTCAGGGAGCGGAGGAATTTTGGAGG
CTGGTGAAGCATGAAAACGCCCCCCTATCGTGCCCTGGCAGGGAAGGCGT
GTGTCTCATTCTTCTTTTCCACCATTACCACCCACCTCATCGGTGACATT
ATGCCGGCGTTTTTTCGAAGGAATGGTCAACTTGTTGTCTACCTCCCCCG
GGAGCATCAGCGTGGCGTTACCTCAGCCTTCCCTGTTTTTTCCTCGATCG
TACCCTCACATGCACATTTTTTCACGCGCATCCGCACAGCAGAGGAAGGC
AAAAAGCTGCAAATATGACAAACGTAGCGCCGGTAAAGTGGGCTCAACGC
TCTGATTCCATCTACGTAACGATTTGCCTGCCCGATGTGACGGACGAAAA
GATAGAATTGGGCACCAACTCCTTGGATTTCAAGGGGAAGAGCAACGGGA
AGGACTACGAGTGCCACCTGGAGTTCCTGCGGACGGTCAAAAAGGACGGG
TCTGTGTGGAAAGTGTTGCCTCGGAGCATTCAAATCCTCCTAAAGAAGGA
GGAGGAAGACACGGGCTTTTGGGAGCGGCTGCTCAAGGACAAGCAATTGG
AGAAGACGAATGTCAAGGTGGACTGGGACCGTTACGTCGACGAGGACGAG
GAAGAAAGCAACCCCAATTTCGACATGAGCAACCTGGAAGGGGGCATGGA
TTTCAGCCAGTTGGGAGGGATGGGAGGGATGGGGGGAATGGGGGGAATGG
GGGGAATGGGGGGAATGGGGGGAATGGGGGGAATGGGGAATTTGCAGGAG
ATGATGGCGGGCATGGGTAAGGGGGATGCCGGCGCCTATGGAGGGGACGA
GGACAGCGACGATGAAGAGCTGCCGGACCTGGAAAGTGACGAAGCCGAGG
AGGGTGGCAAGGAAGGAAAGGAGTGAGGAAGGGGGATGGTCAGGGGAGGA
GGAAGAAATGAAGACTAGTCTAGATCAGGAAAAGGCAGGAGAGAGGTGAA
GAGGAGGTGCTAAGAAGGAGAGATCACGAGGAGGGGATTGTCGTAAAATT
AGTTCTGTCTGGTCAAGGAAGGCGTGAGAGAAAGGTGGATTTAGGGGGAA
GAAATGGCGCATGCGGTCATCTCCACAGCACTCTTTTCGGCAGGAAGAAA
TGAGGCATGTGAGTGCGTCGCCCCGGGTGCATGGCACGGGGAAAGAATCA
AATCGAATGGTTTTGGGGTAGGATAGAAGATTGTGAAGACACAAAAGTCG
TGTATCTTCTCTTGGACTTCAGGTTTTCGCTTGTCGAGATGTTAGCCAGG
CCTTTGAAAATGCCAGTTGCAGTTCGTTGGAATTATACGCACCGTCAGAC
GGGGACTTCTCGCAAAACACACAACCATTGGATGATCATACACATATATT
TATACGCGCGAAGGACCAAGCTTTATTTGTGTTCACGTCCTCCAATTGGC
GCCACT back to topprotein sequence of rna1169 >rna1169-protein ID=rna1169-protein|Name=rna1169|organism=Nannochloropsis gaditana|type=polypeptide|length=465bp
MSDSFGTCTRQSSTRKPPPAMSRKGEVSHYNRQRRRLRWLVSGSLVTLLL
TLNIISLRGRRSDVMASIETASNNEHLALPSSAVSDSKILSDDLPQERDM
LIRGVSIEKSTTPESRPSPESSFGSQEDLELALRITKEKILHEKVERQKQ
PKRNEQNEENDPANSIQTANSKEKASLLGPFEAEGGNPAIPLLQPAGEKA
TRPPISGRPPLHRPASETHVQKIILTISSIDRGERISDLWAGDKLLTILK
TLVSVRELCERGFDLTVWFIAAWKISQQRELIEEALFCQRTQEPVQIRYW
DHFPPDVGGFLSSRHRLAMAKVMDEYDFFISIEDDIYLTPSMVDAYVHAS
GRLALTTDAYAREHHMVGFSRKEHDLLREDRAWALWETLAVDYHVLQLPG
AGWWAQVTGNPHQAMWMATREQIYNFESRCESGFLKLKHPREAEWVEFHS
GALQVRHMSGAWRMF back to topmRNA from alignment at CM002456.1:1386497..1389234- Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below. >rna1169 ID=rna1169|Name=rna1169|organism=Nannochloropsis gaditana|type=mRNA|length=2738bp|location=Sequence derived from alignment at CM002456.1:1386497..1389234- (Nannochloropsis gaditana)
AGGCTATGTATCAAATACCGAATTGTCCGTACCTTTTAATTAAAGTAATC
ACATGATGTGTCTTATTACAGGACAAGCAAGTGGAAGCATACATAGAGTA
CAAATAACGCATGTATAGCAACCTAAAAGTACGTCAGCATCAATAGTACT
GACTGCCGCGCATTGTTTCTACTCATGAGTGACTCTTTTGGCACTTGCAC
ACGACAATCGTCAACCCGTAAGCCTCCACCCGCAATGTCGAGAAAAGGCG
AGGTAAGCCACTACAATCGGCAGCGCAGGCGCCTGAGATGGCTAGTCTCA
GGCAGTTTAGTTACATTACTCTTGACATTGAACATCATTTCACTCCGGGG
GCGGCGCAGCGATGTAATGGCCTCGATTGAAACTGCGAGCAACAATGAAC
ATCTGGCATTGCCTTCTTCGGCGGTTTCTGATAGCAAAATACTTAGTGAT
GACCTTCCACAAGAACGAGACATGCTTATTAGAGGTGTGAGTATAGAAAA
ATCCACAACGCCTGAATCTAGACCGTCACCTGAATCAAGCTTCGGGAGCC
AGGAGGATCTGGAGCTAGCTTTGCGAATCACGAAGGAGAAAATTCTTCAC
GAAAAAGTGGAGCGACAAAAGCAGCCAAAGAGAAACGAGCAAAACGAAGA
AAATGACCCGGCAAATTCCATCCAAACTGCAAACTCAAAAGAGAAAGCGT
CACTTCTAGGACCGTTCGAGGCAGAAGGAGGAAACCCAGCCATTCCGTTG
CTTCAACCTGCAGGCGAGAAAGCCACCCGTCCTCCAATCTCCGGTCGACC
TCCCTTGCATCGTCCTGCCTCCGAGACGCATGTACAAAAAATCATACTAA
CCATATCCAGCATCGACCGAGGTGAGCGCATCTCCGACCTGTGGGCCGGG
GATAAGCTGCTGACAATCCTAAAGACCCTGGTCAGTGTCCGGGAACTTTG
CGAGCGTGGCTTTGATCTGACCGTGTGGTTCATTGCCGCCTGGAAGATTT
CGCAACAAAGAGAGTTGATAGAGGAAGCTTTGTTTTGTCAGCGGACGCAG
GAGCCTGTCCAAATTCGGTATTGGGATCACTTTCCTCCCGATGTTGGCGG
CTTCTTGAGCTCCCGCCATCGGCTCGCGATGGCGAAAGTGATGGGTAAGA
CAACAAAGGGAATAGAAAATGGGAAGGGGGTTGGAAAGTACTACACAGAG
ACACTCCTTCGCATAGAAAATGGTGGATGATGAGAGACGGTGACGATCTT
TCTCCGAGCCTCGTCTTATTTATGCGCTCACATTCTCCTTGTCTACACTA
AGATGAGTACGACTTCTTCATTTCCATCGAGGACGATATCTACCTCACCC
CGTCAATGGTGGATGCGTATGTGCATGCAAGCGGCCGGCTTGCGCTCACC
ACGGACGCGTACGCCCGCGAGCATCACATGGTGGGCTTCTCCCGAAAAGA
ACACGACTTGCTACGAGAGGACCGGGCTTGGGCGCTGTGGGAGACACTGG
CGGTGGATTACCATGTGTTGCAACTCCCCGGAGCAGGTTGGTGGGCACAA
GTGACGGGAAATCCCCATCAGGCCATGTGGATGGCGACAAGGGAACAGAT
TTACAATTTTGAAAGCCGATGCGAGAGCGGCTTTTTGAAATTGAAACATC
CTAGGGAAGCAGAATGGGTGGAGGTGAGGTTGCACGGGACAAGGGGAGTG
GGAGGGGGGAGCCGGTGCAGATTATGTATGACGCACAATTGCGGGGACTG
GAGTATCTGACGATGTATCTTCTATCGTTGCTCATACTCATTCCGTCTCA
CAAACAATTTGTGCACCGCCACCTCCAGTTTCACAGCGGAGCCCTGCAAG
TACGTCACATGTCGGGAGCGTGGCGGATGTTTTGAATCATACAACATTTC
CCCCGAATCTCATTATCATGCACACAATACAAAATTTTCGTTCCTCCCCT
TTAGATATTTATGGGCCCCGAAGAGTGTGAGGATATCCGCAAAGTTCTTC
CGATTGACGATGATATAGGGGGCTTCGAATCTTTCACGGTCTGGCACATG
ACGGACTCGAAACTACGAGTCATGGGAGAGGGCGTGGCACTGGTGAAGGA
TATTGTAACCCACTTGAATGCGGAAAAGGCCTGGAAAAAAGGAAAGATAA
GAGGCGCACGAAGAAAGAATTAAGAGCGGTGAGTTAGCGGCCGAACAAGT
CCGGAGATCTTTTGTGTGTAGCATGTCTAGCTGAAATTTCAGCAACCAAA
TGGTACATTCTGGTTGTTGATCGTCCAGACGTTTTGTATACCTGTACAGC
TGTAAGGTCAATTAGGATCCATAAAAGCGACAAAAATTTGTACGATGTCT
AGATCCAATTTCCACCATATTCATAGAGTTCTGAAAGGACACGCGCGAAA
TCCATTCCTGAAGGCAAACTTCAAACAATGACATGTGCAGCGAAAGACAT
ACCGGTCGTCGTCAGAGGAAGGAGAGACATTGACTACTTCCTGCCACGGC
ATGGGAGAGGGAAAGGATTTGATTGCGGGGATCAAGAAACAACGTCTATG
ACTGCTAATTGTGCAACCGGGAGGAAACGTCCGCTCTCTGGTCTGAGGGC
GCCCTGTCTTGACAACGGTCAAAGTTGATATGGGCCTGGGAGTCGAAGAC
CTAGTACTAATCAAAGAAATGTATAGAAAGTCACCGAAGCCAAAGCATTC
TCATAATTAAAGCACGAAGGCCTTGCGAGTCCCCCTCC back to topCoding sequence (CDS) from alignment at CM002456.1:1386497..1389234- >rna1169 ID=rna1169|Name=rna1169|organism=Nannochloropsis gaditana|type=CDS|length=4194bp|location=Sequence derived from alignment at CM002456.1:1386497..1389234- (Nannochloropsis gaditana)
TTTCACAGCGGAGCCCTGCAAGTACGTCACATGTCGGGAGCGTGGCGGAT
GTTTTGAATGAGTACGACTTCTTCATTTCCATCGAGGACGATATCTACCT
CACCCCGTCAATGGTGGATGCGTATGTGCATGCAAGCGGCCGGCTTGCGC
TCACCACGGACGCGTACGCCCGCGAGCATCACATGGTGGGCTTCTCCCGA
AAAGAACACGACTTGCTACGAGAGGACCGGGCTTGGGCGCTGTGGGAGAC
ACTGGCGGTGGATTACCATGTGTTGCAACTCCCCGGAGCAGGTTGGTGGG
CACAAGTGACGGGAAATCCCCATCAGGCCATGTGGATGGCGACAAGGGAA
CAGATTTACAATTTTGAAAGCCGATGCGAGAGCGGCTTTTTGAAATTGAA
ACATCCTAGGGAAGCAGAATGGGTGGAGATGAGTGACTCTTTTGGCACTT
GCACACGACAATCGTCAACCCGTAAGCCTCCACCCGCAATGTCGAGAAAA
GGCGAGGTAAGCCACTACAATCGGCAGCGCAGGCGCCTGAGATGGCTAGT
CTCAGGCAGTTTAGTTACATTACTCTTGACATTGAACATCATTTCACTCC
GGGGGCGGCGCAGCGATGTAATGGCCTCGATTGAAACTGCGAGCAACAAT
GAACATCTGGCATTGCCTTCTTCGGCGGTTTCTGATAGCAAAATACTTAG
TGATGACCTTCCACAAGAACGAGACATGCTTATTAGAGGTGTGAGTATAG
AAAAATCCACAACGCCTGAATCTAGACCGTCACCTGAATCAAGCTTCGGG
AGCCAGGAGGATCTGGAGCTAGCTTTGCGAATCACGAAGGAGAAAATTCT
TCACGAAAAAGTGGAGCGACAAAAGCAGCCAAAGAGAAACGAGCAAAACG
AAGAAAATGACCCGGCAAATTCCATCCAAACTGCAAACTCAAAAGAGAAA
GCGTCACTTCTAGGACCGTTCGAGGCAGAAGGAGGAAACCCAGCCATTCC
GTTGCTTCAACCTGCAGGCGAGAAAGCCACCCGTCCTCCAATCTCCGGTC
GACCTCCCTTGCATCGTCCTGCCTCCGAGACGCATGTACAAAAAATCATA
CTAACCATATCCAGCATCGACCGAGGTGAGCGCATCTCCGACCTGTGGGC
CGGGGATAAGCTGCTGACAATCCTAAAGACCCTGGTCAGTGTCCGGGAAC
TTTGCGAGCGTGGCTTTGATCTGACCGTGTGGTTCATTGCCGCCTGGAAG
ATTTCGCAACAAAGAGAGTTGATAGAGGAAGCTTTGTTTTGTCAGCGGAC
GCAGGAGCCTGTCCAAATTCGGTATTGGGATCACTTTCCTCCCGATGTTG
GCGGCTTCTTGAGCTCCCGCCATCGGCTCGCGATGGCGAAAGTGATGGTT
TCACAGCGGAGCCCTGCAAGTACGTCACATGTCGGGAGCGTGGCGGATGT
TTTGAATGAGTACGACTTCTTCATTTCCATCGAGGACGATATCTACCTCA
CCCCGTCAATGGTGGATGCGTATGTGCATGCAAGCGGCCGGCTTGCGCTC
ACCACGGACGCGTACGCCCGCGAGCATCACATGGTGGGCTTCTCCCGAAA
AGAACACGACTTGCTACGAGAGGACCGGGCTTGGGCGCTGTGGGAGACAC
TGGCGGTGGATTACCATGTGTTGCAACTCCCCGGAGCAGGTTGGTGGGCA
CAAGTGACGGGAAATCCCCATCAGGCCATGTGGATGGCGACAAGGGAACA
GATTTACAATTTTGAAAGCCGATGCGAGAGCGGCTTTTTGAAATTGAAAC
ATCCTAGGGAAGCAGAATGGGTGGAGATGAGTGACTCTTTTGGCACTTGC
ACACGACAATCGTCAACCCGTAAGCCTCCACCCGCAATGTCGAGAAAAGG
CGAGGTAAGCCACTACAATCGGCAGCGCAGGCGCCTGAGATGGCTAGTCT
CAGGCAGTTTAGTTACATTACTCTTGACATTGAACATCATTTCACTCCGG
GGGCGGCGCAGCGATGTAATGGCCTCGATTGAAACTGCGAGCAACAATGA
ACATCTGGCATTGCCTTCTTCGGCGGTTTCTGATAGCAAAATACTTAGTG
ATGACCTTCCACAAGAACGAGACATGCTTATTAGAGGTGTGAGTATAGAA
AAATCCACAACGCCTGAATCTAGACCGTCACCTGAATCAAGCTTCGGGAG
CCAGGAGGATCTGGAGCTAGCTTTGCGAATCACGAAGGAGAAAATTCTTC
ACGAAAAAGTGGAGCGACAAAAGCAGCCAAAGAGAAACGAGCAAAACGAA
GAAAATGACCCGGCAAATTCCATCCAAACTGCAAACTCAAAAGAGAAAGC
GTCACTTCTAGGACCGTTCGAGGCAGAAGGAGGAAACCCAGCCATTCCGT
TGCTTCAACCTGCAGGCGAGAAAGCCACCCGTCCTCCAATCTCCGGTCGA
CCTCCCTTGCATCGTCCTGCCTCCGAGACGCATGTACAAAAAATCATACT
AACCATATCCAGCATCGACCGAGGTGAGCGCATCTCCGACCTGTGGGCCG
GGGATAAGCTGCTGACAATCCTAAAGACCCTGGTCAGTGTCCGGGAACTT
TGCGAGCGTGGCTTTGATCTGACCGTGTGGTTCATTGCCGCCTGGAAGAT
TTCGCAACAAAGAGAGTTGATAGAGGAAGCTTTGTTTTGTCAGCGGACGC
AGGAGCCTGTCCAAATTCGGTATTGGGATCACTTTCCTCCCGATGTTGGC
GGCTTCTTGAGCTCCCGCCATCGGCTCGCGATGGCGAAAGTGATGGTTTC
ACAGCGGAGCCCTGCAAGTACGTCACATGTCGGGAGCGTGGCGGATGTTT
TGAATGAGTACGACTTCTTCATTTCCATCGAGGACGATATCTACCTCACC
CCGTCAATGGTGGATGCGTATGTGCATGCAAGCGGCCGGCTTGCGCTCAC
CACGGACGCGTACGCCCGCGAGCATCACATGGTGGGCTTCTCCCGAAAAG
AACACGACTTGCTACGAGAGGACCGGGCTTGGGCGCTGTGGGAGACACTG
GCGGTGGATTACCATGTGTTGCAACTCCCCGGAGCAGGTTGGTGGGCACA
AGTGACGGGAAATCCCCATCAGGCCATGTGGATGGCGACAAGGGAACAGA
TTTACAATTTTGAAAGCCGATGCGAGAGCGGCTTTTTGAAATTGAAACAT
CCTAGGGAAGCAGAATGGGTGGAGATGAGTGACTCTTTTGGCACTTGCAC
ACGACAATCGTCAACCCGTAAGCCTCCACCCGCAATGTCGAGAAAAGGCG
AGGTAAGCCACTACAATCGGCAGCGCAGGCGCCTGAGATGGCTAGTCTCA
GGCAGTTTAGTTACATTACTCTTGACATTGAACATCATTTCACTCCGGGG
GCGGCGCAGCGATGTAATGGCCTCGATTGAAACTGCGAGCAACAATGAAC
ATCTGGCATTGCCTTCTTCGGCGGTTTCTGATAGCAAAATACTTAGTGAT
GACCTTCCACAAGAACGAGACATGCTTATTAGAGGTGTGAGTATAGAAAA
ATCCACAACGCCTGAATCTAGACCGTCACCTGAATCAAGCTTCGGGAGCC
AGGAGGATCTGGAGCTAGCTTTGCGAATCACGAAGGAGAAAATTCTTCAC
GAAAAAGTGGAGCGACAAAAGCAGCCAAAGAGAAACGAGCAAAACGAAGA
AAATGACCCGGCAAATTCCATCCAAACTGCAAACTCAAAAGAGAAAGCGT
CACTTCTAGGACCGTTCGAGGCAGAAGGAGGAAACCCAGCCATTCCGTTG
CTTCAACCTGCAGGCGAGAAAGCCACCCGTCCTCCAATCTCCGGTCGACC
TCCCTTGCATCGTCCTGCCTCCGAGACGCATGTACAAAAAATCATACTAA
CCATATCCAGCATCGACCGAGGTGAGCGCATCTCCGACCTGTGGGCCGGG
GATAAGCTGCTGACAATCCTAAAGACCCTGGTCAGTGTCCGGGAACTTTG
CGAGCGTGGCTTTGATCTGACCGTGTGGTTCATTGCCGCCTGGAAGATTT
CGCAACAAAGAGAGTTGATAGAGGAAGCTTTGTTTTGTCAGCGGACGCAG
GAGCCTGTCCAAATTCGGTATTGGGATCACTTTCCTCCCGATGTTGGCGG
CTTCTTGAGCTCCCGCCATCGGCTCGCGATGGCGAAAGTGATGG back to top
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