EWM29504.1, cds1168 (CDS) Nannochloropsis gaditana

Overview
NameEWM29504.1
Unique Namecds1168
TypeCDS
OrganismNannochloropsis gaditana (N. gaditana B-31)
Alignment locationCM002456.1:1388091..1389060 -
Alignment locationCM002456.1:1387562..1387932 -
Alignment locationCM002456.1:1387350..1387406 -

Link to JBrowse

Properties
Property NameValue
Protein idEWM29504.1
Producthypothetical protein
Orig transcript idgnl|cribi|Naga_100601g2.6983.mrna
GbkeyCDS
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
CM002456.1supercontigCM002456.1:1388091..1389060 -
CM002456.1supercontigCM002456.1:1387562..1387932 -
CM002456.1supercontigCM002456.1:1387350..1387406 -
Analyses
This CDS is derived from or has results from the following analyses
Analysis NameDate Performed
GO annotation for N. gaditana B312020-04-08
BLAST analysis for N. gaditana B-312020-04-07
InterPro analysis for N. gaditana B-312020-04-06
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
The following terms have been associated with this CDS:
Vocabulary: Cellular Component
TermDefinition
GO:0016020membrane
Homology
BLAST of EWM29504.1 vs. NCBI_GenBank
Match: gi|585112062|gb|EWM29504.1| (hypothetical protein Naga_100601g2 [Nannochloropsis gaditana])

HSP 1 Score: 960.674 bits (2482), Expect = 0.000e+0
Identity = 465/465 (100.00%), Postives = 465/465 (100.00%), Query Frame = 0
Query:    1 MSDSFGTCTRQSSTRKPPPAMSRKGEVSHYNRQRRRLRWLVSGSLVTLLLTLNIISLRGRRSDVMASIETASNNEHLALPSSAVSDSKILSDDLPQERDMLIRGVSIEKSTTPESRPSPESSFGSQEDLELALRITKEKILHEKVERQKQPKRNEQNEENDPANSIQTANSKEKASLLGPFEAEGGNPAIPLLQPAGEKATRPPISGRPPLHRPASETHVQKIILTISSIDRGERISDLWAGDKLLTILKTLVSVRELCERGFDLTVWFIAAWKISQQRELIEEALFCQRTQEPVQIRYWDHFPPDVGGFLSSRHRLAMAKVMDEYDFFISIEDDIYLTPSMVDAYVHASGRLALTTDAYAREHHMVGFSRKEHDLLREDRAWALWETLAVDYHVLQLPGAGWWAQVTGNPHQAMWMATREQIYNFESRCESGFLKLKHPREAEWVEFHSGALQVRHMSGAWRMF 465
            MSDSFGTCTRQSSTRKPPPAMSRKGEVSHYNRQRRRLRWLVSGSLVTLLLTLNIISLRGRRSDVMASIETASNNEHLALPSSAVSDSKILSDDLPQERDMLIRGVSIEKSTTPESRPSPESSFGSQEDLELALRITKEKILHEKVERQKQPKRNEQNEENDPANSIQTANSKEKASLLGPFEAEGGNPAIPLLQPAGEKATRPPISGRPPLHRPASETHVQKIILTISSIDRGERISDLWAGDKLLTILKTLVSVRELCERGFDLTVWFIAAWKISQQRELIEEALFCQRTQEPVQIRYWDHFPPDVGGFLSSRHRLAMAKVMDEYDFFISIEDDIYLTPSMVDAYVHASGRLALTTDAYAREHHMVGFSRKEHDLLREDRAWALWETLAVDYHVLQLPGAGWWAQVTGNPHQAMWMATREQIYNFESRCESGFLKLKHPREAEWVEFHSGALQVRHMSGAWRMF
Sbjct:    1 MSDSFGTCTRQSSTRKPPPAMSRKGEVSHYNRQRRRLRWLVSGSLVTLLLTLNIISLRGRRSDVMASIETASNNEHLALPSSAVSDSKILSDDLPQERDMLIRGVSIEKSTTPESRPSPESSFGSQEDLELALRITKEKILHEKVERQKQPKRNEQNEENDPANSIQTANSKEKASLLGPFEAEGGNPAIPLLQPAGEKATRPPISGRPPLHRPASETHVQKIILTISSIDRGERISDLWAGDKLLTILKTLVSVRELCERGFDLTVWFIAAWKISQQRELIEEALFCQRTQEPVQIRYWDHFPPDVGGFLSSRHRLAMAKVMDEYDFFISIEDDIYLTPSMVDAYVHASGRLALTTDAYAREHHMVGFSRKEHDLLREDRAWALWETLAVDYHVLQLPGAGWWAQVTGNPHQAMWMATREQIYNFESRCESGFLKLKHPREAEWVEFHSGALQVRHMSGAWRMF 465          
BLAST of EWM29504.1 vs. NCBI_GenBank
Match: gi|585109704|gb|EWM27449.1| (hypothetical protein Naga_100107g10 [Nannochloropsis gaditana])

HSP 1 Score: 600.897 bits (1548), Expect = 0.000e+0
Identity = 298/451 (66.08%), Postives = 349/451 (77.38%), Query Frame = 0
Query:    1 MSDSFGTCTRQSSTRKPPPAMSRKGE----VSHYNRQRRRLRWLVSGSLVTLLLTLNIISLRGRRSDVMASIETASNNEHLALPSSAVSDSKILSDDLPQERDMLIRGVSIEKSTTPESRPSPESSFGSQEDLELALRITKEKILHEKVERQKQPKRNEQNEENDPANSIQTANSKEKASLLGPFEAEGGNPAIPLLQPAGEKATRPPISGRPPLHRPASETHVQKIILTISSIDRGERISDLWAGDKLLTILKTLVSVRELCERGFDLTVWFIAAWKISQQRELIEEALFCQRTQEPVQIRYWDHFPPDVGGFLSSRHRLAMAKVMDEYDFFISIEDDIYLTPSMVDAYVHASGRLALTTDAYAREHHMVGFSRKEHDLLREDRAWALWETLAVDYHVLQLPGAGWWAQVTGNPHQAMWMATREQIYNFESRCESGFLKLKHPREAEWVE 447
            M +S GT TR  S  KP P  +RK +    +++ NR  +RLRWL+ G L+T+LL LNI+SLRGRRSD ++ +   SNNE+LA+P  A+   K +SDD P+ ++M ++  + E  TTP  + S E+S GSQE LELA R T E   H K ERQKQ + ++++E  D +N I+   S EKAS++   EAE  NPAIPLLQPAG+KA R PISGRPPLHRPASETH+QKI+LTISS DRG+RIS LWAGDKL TI +TLVSVRE CERGFDLTVWFIAAWKISQ  ++IEEALFCQR  +PV IRYWDHF PD+   LSSRHRLAMA+V+DEYDFFISIEDDIYLTP MVDAYVHAS RLAL TDA AREH MVGFSRKEHDLL EDRAWALWETLA +Y  L++PGAGWWAQV GN HQ MWMATREQIYNFESRC+ GFL L +P EA WVE
Sbjct:    1 MRNSSGTGTRHLSACKPAPPTTRKDKDFTLINYCNRPHKRLRWLIVGVLITVLLILNIVSLRGRRSDPISLVGQLSNNEYLAMPLPALPHGKAVSDDPPRRQEMSLQDFAKESLTTPLIQTSSENSIGSQEHLELASRDTNENASHTKEERQKQRESDKEDENRDSSNLIEMTTSDEKASIVQLVEAEERNPAIPLLQPAGDKAIRHPISGRPPLHRPASETHIQKIMLTISSFDRGQRISHLWAGDKLQTIQETLVSVREFCERGFDLTVWFIAAWKISQHEKIIEEALFCQRIHKPVHIRYWDHFSPDIRSLLSSRHRLAMAEVIDEYDFFISIEDDIYLTPLMVDAYVHASSRLALATDADAREHFMVGFSRKEHDLLSEDRAWALWETLAEEYSALEIPGAGWWAQVKGNRHQGMWMATREQIYNFESRCDGGFLNLTNPNEAGWVE 451          
BLAST of EWM29504.1 vs. NCBI_GenBank
Match: gi|553190856|ref|XP_005855277.1| (hypothetical protein NGA_0073800, partial [Nannochloropsis gaditana CCMP526] >gi|422293778|gb|EKU21078.1| hypothetical protein NGA_0073800, partial [Nannochloropsis gaditana CCMP526])

HSP 1 Score: 461.84 bits (1187), Expect = 1.433e-159
Identity = 217/220 (98.64%), Postives = 217/220 (98.64%), Query Frame = 0
Query:  232 RGERISDLWAGDKLLTILKTLVSVRELCERGFDLTVWFIAAWKISQQRELIEEALFCQRTQEPVQIRYWDHFPPDVGGFLSSRHRLAMAKVMDEYDFFISIEDDIYLTPSMVDAYVHASGRLALTTDAYAREHHMVGFSRKEHDLLREDRAWALWETLAVDYHVLQLPGAGWWAQVTGNPHQAMWMATREQIYNFESRCESGFLKLKHPREAEWVEFHSG 451
            RGERISDLWAGDKLLTILKTLVSVRELCERGFDLTVWFIAAWKISQQRELIEEALFCQRTQEPVQIRYWDHFPPDVGGFLSSRHRLAMAKVMDEYDFFISIEDDIYLTPSMVDAYVHASGRLALTTDAYAREHHMVGFSRKEHDLLREDRAWALWETLAVDYHVLQLPGAGWWAQVTGNPHQAMWMATREQIYNFESRCESGFLKLKHPREAEWVE   G
Sbjct:    1 RGERISDLWAGDKLLTILKTLVSVRELCERGFDLTVWFIAAWKISQQRELIEEALFCQRTQEPVQIRYWDHFPPDVGGFLSSRHRLAMAKVMDEYDFFISIEDDIYLTPSMVDAYVHASGRLALTTDAYAREHHMVGFSRKEHDLLREDRAWALWETLAVDYHVLQLPGAGWWAQVTGNPHQAMWMATREQIYNFESRCESGFLKLKHPREAEWVEIFMG 220          
BLAST of EWM29504.1 vs. NCBI_GenBank
Match: gi|298715762|emb|CBJ28240.1| (hypothetical protein Esi_0097_0005 [Ectocarpus siliculosus])

HSP 1 Score: 120.553 bits (301), Expect = 1.823e-25
Identity = 83/270 (30.74%), Postives = 122/270 (45.19%), Query Frame = 0
Query:  222 KIILTISSIDRGERISDLWAGDKLLTILKTLVSVRELCERGFDLTVWFIAAWKISQQRELIEEALFCQRTQEPVQIRYWDHFPPDVGGFLSSRHRLAMAKVMDEYDFFISIEDDIYLT----------PSMVDAYVHASGRLALTTDAYAREHHMVGFSRKEHDLLRE--------DRAWALWETLAVDYHVLQLPGAGWWAQVT-------GNPHQAMWMATREQIYNFESRCESGFLKLKHPREAEWVEFHSGALQV-RHMSGAWRMF 465
            +I+  ++S DRG R+   +  DKL  IL  +  +RE CE GF  TV  IAAW++S     + + LFC+RT   V      H P  +G  LS +HR+ M   ++E+D FI +EDD+ +T            ++D   H+ G     T        + GF R EH    E           W  WE +      ++L  AG +  +        G  +Q MWMATREQ+     +    +L          VE HSG+LQ+ R   G  ++F
Sbjct:  395 RILFVMTSFDRGRRLGPSFKKDKLDFILLMMDEIREACEAGFSPTVHLIAAWELSGVEVFVRDRLFCRRTGAHVPYSLEVH-PSSIGNDLSIKHRIFMKPRLEEFDLFIQVEDDVIVTLNHMLLFREESELLDGRRHSDGAPLANT-------AVPGFIRVEHAAEEEGTIAGPSSGEEWQEWEVMLSRLRPVKLEEAGIFLTLGPSLPVPRGGNNQGMWMATREQLRKLSEKKSCDYLNFDESSTKGHVETHSGSLQMFRPNCGLQKVF 656          
BLAST of EWM29504.1 vs. NCBI_GenBank
Match: gi|299471666|emb|CBN76888.1| (expressed unknown protein [Ectocarpus siliculosus])

HSP 1 Score: 110.923 bits (276), Expect = 2.468e-22
Identity = 79/261 (30.27%), Postives = 127/261 (48.66%), Query Frame = 0
Query:  215 ASETHVQKIILTISSIDRGERISDLWAG--DKLLTILKTLVSVRELCERGFDLTVWFIAAWKISQQRELIEEALFCQRTQEPVQIRYWDHFPPDVGGFLSSRHRLAMAKVMDEYDFFISIEDDIYLTPSMVDAYV----HASGRLALTTDAYAREHHMVGFSRKEHDLLRE------DRAWALWETLAVDYHVLQLPGAGWWAQVT--------GNPHQAMWMATREQIYNFESRCESGFLKLKHPREAEWVEFHSGALQV 455
            A+     +I+  ISS DR +R+   + G  DKL  IL  +  ++E CE GF   V  IAAW  S+  +LI + LFCQRT E V     +H PP V   L+ +HR+ M   ++++D F+ +EDD+ +T + +  Y     +   RL +          + GF R E    ++      +  W  WE +    + +++ GAG +  ++        GN +Q MWMATREQ+    +     +L+          E HSG++Q+
Sbjct:  368 ATGGESGRILYVISSYDRRKRLGLGYDGKVDKLDYILMMMDEMKEACEGGFSPHVHLIAAWDTSEVADLIRDRLFCQRTGELVPYSSEEH-PPSVRNNLAIKHRIYMKPRVEDFDVFMQVEDDMIVTLNHILLYREECDNLEKRLGMGGSRGRPNVFVPGFLRVEPGGTKDKEKDKWEGEWFEWEIVLSRLNPIKIYGAGTYMSLSPSKVLPRAGN-NQGMWMATREQLKKMAANQACNYLEFDESSANGIPEMHSGSIQM 626          
BLAST of EWM29504.1 vs. NCBI_GenBank
Match: gi|298715437|emb|CBJ28048.1| (hypothetical protein Esi_0089_0116 [Ectocarpus siliculosus])

HSP 1 Score: 100.908 bits (250), Expect = 1.464e-19
Identity = 77/257 (29.96%), Postives = 124/257 (48.25%), Query Frame = 0
Query:  215 ASETHVQKIILTISSIDRGERISDLWAG-DKLLTILKTLVSVRELCERGFDLTVWFIAAWKISQQRELIEEALFCQRTQEPVQIRYWDHFPPDVGGFLSSRHRLAMAKVMDEYDFFISIEDDIYLTPSMVDAYVHASGRLALTT-----DAYAREHHMVGFSRKEHD--LLREDRAWALWETLAVDYHVLQLPGAGWWAQV--------TGNPHQAMWMATREQIYNFESRCESGFLKLKHPREAEWVEFHSGALQV 455
            A+      I+  ++S DRG R+     G DKL  +L  +  +R  CE GF   V  I+AW+   + EL  + L C+R   PV +   +H PP +   LS +HR+ M   + EYD F+ +EDD+ LT + +  Y+  S +L+L        A     +M GF R E +         W  WE +   +  + + GAG +  +        +GN +Q  WMAT+EQ+     +C+  +L+        +VE  SG+L++
Sbjct:   77 ATTVEAPSILFVVTSFDRGRRLGRRGKGVDKLNYVLMIMDEIRGACEAGFSPHVHLISAWEAQPEVELFTDRLLCRRIGGPVTLTLEEH-PPSIKEALSIKHRIYMKPRVREYDLFVQLEDDMILTVNHILKYLEESEKLSLRNIGTRPRAMPMHDYMPGFVRVEPEPGATGVGGEWFEWEIILSRFRGVHVVGAGTYLGLEKSRVLPFSGN-NQGFWMATQEQLKYLCRQCQ--YLRYTGQSSVPFVEKFSGSLEM 329          
BLAST of EWM29504.1 vs. NCBI_GenBank
Match: gi|551579173|ref|XP_005775145.1| (hypothetical protein EMIHUDRAFT_195038 [Emiliania huxleyi CCMP1516] >gi|485627089|gb|EOD22716.1| hypothetical protein EMIHUDRAFT_195038 [Emiliania huxleyi CCMP1516])

HSP 1 Score: 72.0182 bits (175), Expect = 4.609e-10
Identity = 65/238 (27.31%), Postives = 101/238 (42.44%), Query Frame = 0
Query:  216 SETHVQKIILTISSIDRGERISDLWAGDKLLTILKTLVSVRELCERGFDLTVWFIAAW-KISQQRELIEEALFCQRTQEPVQIRYWDHFPPDVGGFLSSRHRLAMAKVMDEYDFFISIEDDIYLTPSMVDAYVHASGRLALTTDAYAREHHMVGFSRKEHDLL----------------------REDRAWALWETLAVDYHVLQLPGAGWWAQVTGNPHQAMWMATREQIYNFESRC 430
            S T  ++I+  I+  D            +L+     L   R++CE GF L V  + A  ++    + ++ AL C      +++      PP     L+  HR  M   +D +D FI  EDDI LT + + A++  + RLA          +MVGF R E  LL                      R +R   +WE      HVL+L G  ++   T   H  MW+A R+Q+ + +SRC
Sbjct:    2 SATARERILYCIAVYD----------NSQLIYTRTMLDGARDMCEAGFRLRVVLLTAHPELLTPLDDLKAALSCANRDGALELELAVR-PPATKKALTLEHRRLMWDRLDAHDLFIYAEDDIGLTLAHLSAWLSETRRLAT-------RRYMVGFMRYERALLFGPTLNGRGGIAYDAGRLQHGARSER--VVWEHAPASLHVLRLGGELYYQPET--VHHGMWIANRKQLLSIQSRC 217          
The following BLAST results are available for this feature:
BLAST of EWM29504.1 vs. NCBI_GenBank
Analysis Date: 2020-04-07 (BLAST analysis for N. gaditana B-31)
Total hits: 7
Match NameE-valueIdentityDescription
gi|585112062|gb|EWM29504.1|0.000e+0100.00hypothetical protein Naga_100601g2 [Nannochloropsi... [more]
gi|585109704|gb|EWM27449.1|0.000e+066.08hypothetical protein Naga_100107g10 [Nannochlorops... [more]
gi|553190856|ref|XP_005855277.1|1.433e-15998.64hypothetical protein NGA_0073800, partial [Nannoch... [more]
gi|298715762|emb|CBJ28240.1|1.823e-2530.74hypothetical protein Esi_0097_0005 [Ectocarpus sil... [more]
gi|299471666|emb|CBN76888.1|2.468e-2230.27expressed unknown protein [Ectocarpus siliculosus][more]
gi|298715437|emb|CBJ28048.1|1.464e-1929.96hypothetical protein Esi_0089_0116 [Ectocarpus sil... [more]
gi|551579173|ref|XP_005775145.1|4.609e-1027.31hypothetical protein EMIHUDRAFT_195038 [Emiliania ... [more]
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Relationships

This CDS is a part of the following mRNA feature(s):

Feature NameUnique NameSpeciesType
rna1169rna1169Nannochloropsis gaditana (N. gaditana B-31)mRNA


Sequences
Synonyms
Publications