rna1166, rna1166 (mRNA) Nannochloropsis gaditana

Overview
Namerna1166
Unique Namerna1166
TypemRNA
OrganismNannochloropsis gaditana (N. gaditana B-31)
Sequence length366
Alignment locationCM002456.1:1375782..1376970 +

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Properties
Property NameValue
Productrna polymerase ii core subunit
Orig transcript idgnl|cribi|Naga_101514g1.565.mrna
Orig protein idgnl|cribi|Naga_101514g1.565
GbkeymRNA
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
CM002456.1supercontigCM002456.1:1375782..1376970 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
Naga_101514g1gene1123Nannochloropsis gaditana (N. gaditana B-31)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
rna1166rna1166-proteinNannochloropsis gaditana (N. gaditana B-31)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
EWM29508.1cds1165Nannochloropsis gaditana (N. gaditana B-31)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>rna1166 ID=rna1166|Name=rna1166|organism=Nannochloropsis gaditana|type=mRNA|length=366bp
ATGCCCAACGTCCGGGCGCCGAAGCTTGAAATACTAGAGCTCAAGGACGA
TTTTATTAAGTTCATTCTGTCCGATACGGACGCCTCCGTGGCCAATGCTC
TGCGTCGCGTGATGATCGCGGAAGTTCCCACTTTGGCTATTGACCTGGTT
TCTTTTGAGGTGAACTCCTCCGTGCTGAACGATGAATATTTAGCCCATCG
CCTCGGTTTGATTCCCCTCCGCTCCGTCAACCCCCGGTACAAAAAAGTGG
CCGACTTGAAAGATTTCCGCGACTGCGACTGCGACTCCCATTGCTCGCGG
TGCTCGGTCGAACTGTCCTTAGATGTGAGTGTGGGTAGAACCCGCCCACT
ACTCCTCCGGGGCTGA
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protein sequence of rna1166

>rna1166-protein ID=rna1166-protein|Name=rna1166|organism=Nannochloropsis gaditana|type=polypeptide|length=267bp
PSLLSQIPPYLLLSLPSLLPSLPLSLSSLAVQNCSKLLSSIPPPLPPSLH
LFLSCLLPLVLLPILPPSLFCFPPSLVACRLSAHAQIPLPSLPPSLPPSS
DPSSGGISIVHLGPEQSIRLTAIAKKGIGKEHAKWSPCAVATYTNDPVIT
LNKEEHGKLSLAQKKQLIDCCPTKVFRLDERENVTVARPGKCIYCQECQA
LAKTLKSDPDDDPVVQVTANEERFVFAVETTGALTAGEVVEHALEIVLSK
ITEVQTQLVHIARTGVV
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mRNA from alignment at CM002456.1:1375782..1376970+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>rna1166 ID=rna1166|Name=rna1166|organism=Nannochloropsis gaditana|type=mRNA|length=1189bp|location=Sequence derived from alignment at CM002456.1:1375782..1376970+ (Nannochloropsis gaditana)
ccctccctcctctctcaaatccctccctatcttcttctctctctcccttc
cctgcttccttccctgcctctttctctctcttcgcTGGCCGTTCAGAATT
GTTCGAAGCTCCTctcgtccatccctcccccccttcctccatccctccat
ctctttctctcttgcctccttcctcttgtccttcttcccatcctccctcc
ctccctcttttgcttccctccctcccttgtcgctTGCCGTCTTTCCGCCC
ACGCCCAgattccccttccctccctccctccctccctccctccctccagc
gatccctcctccggcgGCATCAGCATCGTCCACCTAGGGCCTGAACAGTC
CATCCGCCTGACCGCCatcgccaagaaagggaTCGGGAAGGAACATGCCA
AGTGGTCTCCCTGCGCGGTAGCCACCTATACGAACGATCCCGTCATCACC
ctgaacaaggaggaggtgcggataggcccctcccctccctccctccctcc
ctccctccctccttccttccttccttcaccttccCACCGGGCGCAattct
cttcctcgtggctcatctgcctccctccctccctgtttccttcctccctc
cctccctcctccctcagcacGGTAAGCTCAGCCTGGCGCAGAAGAAGCAG
TTGATCGATTGTTGCCCAACTAAGGTCTTCCGTTTGGACGAACGGGAAAA
CGTGACGGTGGCGCGTCCGGGGAAATGCATCTATTGCCAAGAATGCCAGG
CACTGGCCAAGACCTTgaaaagcgacccggatgaTGACCCCGTGGTCCAG
GTCACGGCGAACGAGGAGCGCTTTGTCTTTGCGGTGGAGACGACGGGGGC
CTTGACggccggggaggtggtggagcacGCGTTGGAGATTGTGCTGAGCA
AGATCACCGAGGTGCAGACTCAGCTTGTGCACATTGCGCGGACGGGGGTG
GTGTAaagcgggaaggggggagggcgggagggagggcaggggggagggcg
ggagggaagcggccCCGAGGGCCAGCACGAATCCCGGTGCGTGTCCACAG
GCAGCTGTCGGGCGAGTGGCTAAGaggcttccctccttcgatgCTTCTCC
CCAGAGTTTCCAACGCGCGcaaaaggagagaaggaatcGGTCACGTGGCA
GCTGCCCAATGCCTTGGTGGCTTCATGTCAACGGTCTTC
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Coding sequence (CDS) from alignment at CM002456.1:1375782..1376970+

>rna1166 ID=rna1166|Name=rna1166|organism=Nannochloropsis gaditana|type=CDS|length=1608bp|location=Sequence derived from alignment at CM002456.1:1375782..1376970+ (Nannochloropsis gaditana)
ccctccctcctctctcaaatccctccctatcttcttctctctctcccttc
cctgcttccttccctgcctctttctctctcttcgcTGGCCGTTCAGAATT
GTTCGAAGCTCCTctcgtccatccctcccccccttcctccatccctccat
ctctttctctcttgcctccttcctcttgtccttcttcccatcctccctcc
ctccctcttttgcttccctccctcccttgtcgctTGCCGTCTTTCCGCCC
ACGCCCAgattccccttccctccctccctccctccctccctccctccagc
gatccctcctccggcgGCATCAGCATCGTCCACCTAGGGCCTGAACAGTC
CATCCGCCTGACCGCCatcgccaagaaagggaTCGGGAAGGAACATGCCA
AGTGGTCTCCCTGCGCGGTAGCCACCTATACGAACGATCCCGTCATCACC
ctgaacaaggaggagcacGGTAAGCTCAGCCTGGCGCAGAAGAAGCAGTT
GATCGATTGTTGCCCAACTAAGGTCTTCCGTTTGGACGAACGGGAAAACG
TGACGGTGGCGCGTCCGGGGAAATGCATCTATTGCCAAGAATGCCAGGCA
CTGGCCAAGACCTTgaaaagcgacccggatgaTGACCCCGTGGTCCAGGT
CACGGCGAACGAGGAGCGCTTTGTCTTTGCGGTGGAGACGACGGGGGCCT
TGACggccggggaggtggtggagcacGCGTTGGAGATTGTGCTGAGCAAG
ATCACCGAGGTGCAGACTCAGCTTGTGCACATTGCGCGGACGGGGGTGGT
GTAaccctccctcctctctcaaatccctccctatcttcttctctctctcc
cttccctgcttccttccctgcctctttctctctcttcgcTGGCCGTTCAG
AATTGTTCGAAGCTCCTctcgtccatccctcccccccttcctccatccct
ccatctctttctctcttgcctccttcctcttgtccttcttcccatcctcc
ctccctccctcttttgcttccctccctcccttgtcgctTGCCGTCTTTCC
GCCCACGCCCAgattccccttccctccctccctccctccctccctccctc
cagcgatccctcctccggcgGCATCAGCATCGTCCACCTAGGGCCTGAAC
AGTCCATCCGCCTGACCGCCatcgccaagaaagggaTCGGGAAGGAACAT
GCCAAGTGGTCTCCCTGCGCGGTAGCCACCTATACGAACGATCCCGTCAT
CACCctgaacaaggaggagcacGGTAAGCTCAGCCTGGCGCAGAAGAAGC
AGTTGATCGATTGTTGCCCAACTAAGGTCTTCCGTTTGGACGAACGGGAA
AACGTGACGGTGGCGCGTCCGGGGAAATGCATCTATTGCCAAGAATGCCA
GGCACTGGCCAAGACCTTgaaaagcgacccggatgaTGACCCCGTGGTCC
AGGTCACGGCGAACGAGGAGCGCTTTGTCTTTGCGGTGGAGACGACGGGG
GCCTTGACggccggggaggtggtggagcacGCGTTGGAGATTGTGCTGAG
CAAGATCACCGAGGTGCAGACTCAGCTTGTGCACATTGCGCGGACGGGGG
TGGTGTAa
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Synonyms
Publications