rna1165, rna1165 (mRNA) Nannochloropsis gaditana

Overview
Namerna1165
Unique Namerna1165
TypemRNA
OrganismNannochloropsis gaditana (N. gaditana B-31)
Sequence length333
Alignment locationCM002456.1:1374851..1375624 +

Link to JBrowse

Properties
Property NameValue
Productrna polymerase ii core subunit
Orig transcript idgnl|cribi|Naga_101452g1.7311.mrna
Orig protein idgnl|cribi|Naga_101452g1.7311
GbkeymRNA
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
CM002456.1supercontigCM002456.1:1374851..1375624 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
Naga_101452g1gene1122Nannochloropsis gaditana (N. gaditana B-31)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
rna1165rna1165-proteinNannochloropsis gaditana (N. gaditana B-31)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
EWM29509.1cds1164Nannochloropsis gaditana (N. gaditana B-31)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>rna1165 ID=rna1165|Name=rna1165|organism=Nannochloropsis gaditana|type=mRNA|length=333bp
ATGAGCGAAGACGCCGGGAACAAAAAAATCGCAATCCCTGCGTCCCCAGT
ATCGTGCAACCTAAAAGCCGCACAAGAAGACGAAAATGTCTTCGGTCAGC
TGTTTTGTCTGGCGAATGCCACCGCAGGCAGTTTGGAAGCGTTGTGGGAG
GAAGTCGGGTGCTCCTCGGAAGAGAGGCGCGAGCATTTGAAAGGCCTGGT
CGTCGAGTTCGAGCGTCTGTGCACGGAGAAAGTGCGGGAGGAAGAAAGTG
TGCGGGACCAATTCCGGTCCAGCATCGCCCAGTTACGACAGGAAATGGTG
GAGCTGACGGCATGCTTGGGGGAAAAGCGCTAA
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protein sequence of rna1165

>rna1165-protein ID=rna1165-protein|Name=rna1165|organism=Nannochloropsis gaditana|type=polypeptide|length=121bp
MPNVRAPKLEILELKDDFIKFILSDTDASVANALRRVMIAEVPTLAIDLV
SFEVNSSVLNDEYLAHRLGLIPLRSVNPRYKKVADLKDFRDCDCDSHCSR
CSVELSLDVSVGRTRPLLLRG
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mRNA from alignment at CM002456.1:1374851..1375624+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>rna1165 ID=rna1165|Name=rna1165|organism=Nannochloropsis gaditana|type=mRNA|length=774bp|location=Sequence derived from alignment at CM002456.1:1374851..1375624+ (Nannochloropsis gaditana)
ATGCCCAACGTCCGGGCGCCGAAGCTTGAAATACTAGAGCTCAAGGTACA
GGGGGTGTCTTCCCAGCTGCTTGACTTTCTTCTATATCACGGGGGCTATC
ACAACTTATGGTCATAAAATCTCATTCCATCTTCATGTATTTAGGACGAT
TTTATTAAGTTCATTCTGTCCGATACGGACGCCTCCGTGGCCAATGCTCT
GCGTCGCGTGATGATCGCGGAAGTTCCCACTTTGGCTATTGACCTGGTTT
CTTTTGAGGTGAACTCCTCCGTGCTGAACGATGAATATTTAGCCCATCGC
CTCGGTAAGCACACACACGAATTATATCCATACATGTTCGAGGTCTTTGT
CGGCACGCATAGGCAAAAAAAATCATGCCACGCTCGGCCTACGATGTCTC
ACGTCCATTCAGAATCCTCTGCACTCGATCATGCTCTCATGCTTTATTAT
CATTGTTCACGCGCGCGACGTAGGTTTGATTCCCCTCCGCTCCGTCAACC
CCCGGTACAAAAAAGTGGCCGACTTGAAAGATTTCCGCGACTGCGACTGC
GACTCCCATTGCTCGCGGTGCTCGGTCGAACTGTCCTTAGATGTGAGGTA
TCAGACCAAACGGCAGCAGGTGGCattggtggagggcgggcgggagggcg
ggatggagggcgggatgggcgagggaggattgCCAGTGAATGTGACGAGC
GCTGACCTGGTTGTCACGCCCGACGAGGATCAACAAGTGTGGGTAGAACC
CGCCCACTACTCCTCCGGGGCTGA
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Coding sequence (CDS) from alignment at CM002456.1:1374851..1375624+

>rna1165 ID=rna1165|Name=rna1165|organism=Nannochloropsis gaditana|type=CDS|length=1464bp|location=Sequence derived from alignment at CM002456.1:1374851..1375624+ (Nannochloropsis gaditana)
ATGCCCAACGTCCGGGCGCCGAAGCTTGAAATACTAGAGCTCAAGGACGA
TTTTATTAAGTTCATTCTGTCCGATACGGACGCCTCCGTGGCCAATGCTC
TGCGTCGCGTGATGATCGCGGAAGTTCCCACTTTGGCTATTGACCTGGTT
TCTTTTGAGGTGAACTCCTCCGTGCTGAACGATGAATATTTAGCCCATCG
CCTCGGTTTGATTCCCCTCCGCTCCGTCAACCCCCGGTACAAAAAAGTGG
CCGACTTGAAAGATTTCCGCGACTGCGACTGCGACTCCCATTGCTCGCGG
TGCTCGGTCGAACTGTCCTTAGATGTGAGTGTGGGTAGAACCCGCCCACT
ACTCCTCCGGGGCTGAATGCCCAACGTCCGGGCGCCGAAGCTTGAAATAC
TAGAGCTCAAGGACGATTTTATTAAGTTCATTCTGTCCGATACGGACGCC
TCCGTGGCCAATGCTCTGCGTCGCGTGATGATCGCGGAAGTTCCCACTTT
GGCTATTGACCTGGTTTCTTTTGAGGTGAACTCCTCCGTGCTGAACGATG
AATATTTAGCCCATCGCCTCGGTTTGATTCCCCTCCGCTCCGTCAACCCC
CGGTACAAAAAAGTGGCCGACTTGAAAGATTTCCGCGACTGCGACTGCGA
CTCCCATTGCTCGCGGTGCTCGGTCGAACTGTCCTTAGATGTGAGTGTGG
GTAGAACCCGCCCACTACTCCTCCGGGGCTGAATGCCCAACGTCCGGGCG
CCGAAGCTTGAAATACTAGAGCTCAAGGACGATTTTATTAAGTTCATTCT
GTCCGATACGGACGCCTCCGTGGCCAATGCTCTGCGTCGCGTGATGATCG
CGGAAGTTCCCACTTTGGCTATTGACCTGGTTTCTTTTGAGGTGAACTCC
TCCGTGCTGAACGATGAATATTTAGCCCATCGCCTCGGTTTGATTCCCCT
CCGCTCCGTCAACCCCCGGTACAAAAAAGTGGCCGACTTGAAAGATTTCC
GCGACTGCGACTGCGACTCCCATTGCTCGCGGTGCTCGGTCGAACTGTCC
TTAGATGTGAGTGTGGGTAGAACCCGCCCACTACTCCTCCGGGGCTGAAT
GCCCAACGTCCGGGCGCCGAAGCTTGAAATACTAGAGCTCAAGGACGATT
TTATTAAGTTCATTCTGTCCGATACGGACGCCTCCGTGGCCAATGCTCTG
CGTCGCGTGATGATCGCGGAAGTTCCCACTTTGGCTATTGACCTGGTTTC
TTTTGAGGTGAACTCCTCCGTGCTGAACGATGAATATTTAGCCCATCGCC
TCGGTTTGATTCCCCTCCGCTCCGTCAACCCCCGGTACAAAAAAGTGGCC
GACTTGAAAGATTTCCGCGACTGCGACTGCGACTCCCATTGCTCGCGGTG
CTCGGTCGAACTGTCCTTAGATGTGAGTGTGGGTAGAACCCGCCCACTAC
TCCTCCGGGGCTGA
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Synonyms
Publications