rna1164, rna1164 (mRNA) Nannochloropsis gaditana

Overview
Namerna1164
Unique Namerna1164
TypemRNA
OrganismNannochloropsis gaditana (N. gaditana B-31)
Sequence length535
Alignment locationCM002456.1:1368426..1369293 -

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Properties
Property NameValue
Producthypothetical protein
Orig transcript idgnl|cribi|Naga_101392g1.6243.mrna
Orig protein idgnl|cribi|Naga_101392g1.6243
GbkeymRNA
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
CM002456.1supercontigCM002456.1:1368426..1369293 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
Naga_101392g1gene1121Nannochloropsis gaditana (N. gaditana B-31)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
rna1164rna1164-proteinNannochloropsis gaditana (N. gaditana B-31)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
EWM29510.1cds1163Nannochloropsis gaditana (N. gaditana B-31)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>rna1164 ID=rna1164|Name=rna1164|organism=Nannochloropsis gaditana|type=mRNA|length=535bp
CGCCCGTCCTCCAGATCCAATGCCTCACGGATCGCTTGGAAGTCCTTCGG
CCCATTCTCAAGCTGATCTGGAAGCGGGAGGAATTTCTCCGAGAGCGTAC
AGAGATGGAAGAGCTGCAGAAGAACAGCAAGGCACGGTTGACGGACCGGG
GAGGGAAACGGATCGAGGAACTGATGCGCATCGAAAAAATGGACAAGCAC
GTGAAGAAAGATCTCCCCATCTTGACCGAGCGGTTGCGAAAACGTTTGTT
GGAGTGGGAGAAAGCTCCGGAGGAAGGGAACGGGGCGCCTTTCCTCTACC
AAGGGATGCCCTACCTGGACACGATGGAGGCGGAGGAGGACGCCTGGATC
CGACACCGGGAGGCCCAACGGCTGGAGAAGGAACAGAAGAAGAAAGAGGA
GTTGGAGCGGTACCGCGACAGCCATGGGGGGCCGGGCGGAGACCAAAGAA
AAAGGGGGCCGTGACACCCGCCGCCGCCGGCCTCGGAGACAAGCGAAGCA
CGTCCTGGGACCCTGCAGGGAGAAAGGGCTTCTGA
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protein sequence of rna1164

>rna1164-protein ID=rna1164-protein|Name=rna1164|organism=Nannochloropsis gaditana|type=polypeptide|length=110bp
MSEDAGNKKIAIPASPVSCNLKAAQEDENVFGQLFCLANATAGSLEALWE
EVGCSSEERREHLKGLVVEFERLCTEKVREEESVRDQFRSSIAQLRQEMV
ELTACLGEKR
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mRNA from alignment at CM002456.1:1368426..1369293-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>rna1164 ID=rna1164|Name=rna1164|organism=Nannochloropsis gaditana|type=mRNA|length=868bp|location=Sequence derived from alignment at CM002456.1:1368426..1369293- (Nannochloropsis gaditana)
ATGAGCGAAGACGCCGGGAACAAAAAAATCGCAATCCCTGCGTCCCCAGT
ATCGTGCAACCTAAAAGCCGCACAAGAAGACGAAAATGTCTTCGGTCAGC
TGTTTTGTCTGGCGAATGCCACCGCAGGCAGTTTGGAAGCGTTGTGGGAG
GAAGTCGGGTGCTCCTCGGAAGAGAGGCGCGAGCATTTGAAAGGTACGTA
GCCGACCCGACCTGTTCCAGAATCTAGAAAAGAGGACACGATGCGGTAGA
AAAAGGGAGACGATGAGCATGACGATCGGAAAAATCTGGACCCAATGTGG
GAGGAAGATTGATTGTTGCTTGCCGTTCACAAAAGGCTTGGCGTTCACTT
GGTGGCCCCCCCCCCCAAAGCAATACTCACACCAGCTAGGCCGCTAGCAC
ACACAACGTATAGGAAACAACTACCTCACTGTCCTTTATCTTGCCCACCA
ACACCTCCCTTCCGCCTTCTGGTCCCTTTCTTCCGCCATCGTACGCGGCA
CAGGCCTGGTCGTCGAGTTCGAGCGTCTGTGCACGGAGAAAGTGCGGGAG
GAAGAAAGTGTGCGGGACCAATTCCGGTCCAGCATCGCCCAGTTACGACA
GGAAATGGTGGAGCTGACGGCATGCTTGGGGGTAAGGGGAAGAAGGGGAG
ACAGTGCTGCAAAAGAGAAGCACGGTAGAGGTTGGCGCCATCACTCAAAA
CATGGACGAGGGAAGTTCCTCCCACCACACGCCCTCCCTCCTTCCCTCCC
TCCCTCCCTCCCTCCCTCCCTCCCTCCCTCCCCCCTTTCGTCCTTCACCA
CCCTCACAGCACGATTCCCCGCCTTCGTCGACCCGCGCTTCCCTGGGAAG
TGACAGGAAAAGCGCTAA
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Coding sequence (CDS) from alignment at CM002456.1:1368426..1369293-

>rna1164 ID=rna1164|Name=rna1164|organism=Nannochloropsis gaditana|type=CDS|length=999bp|location=Sequence derived from alignment at CM002456.1:1368426..1369293- (Nannochloropsis gaditana)
GAAAAGCGCTAAGCCTGGTCGTCGAGTTCGAGCGTCTGTGCACGGAGAAA
GTGCGGGAGGAAGAAAGTGTGCGGGACCAATTCCGGTCCAGCATCGCCCA
GTTACGACAGGAAATGGTGGAGCTGACGGCATGCTTGGGGATGAGCGAAG
ACGCCGGGAACAAAAAAATCGCAATCCCTGCGTCCCCAGTATCGTGCAAC
CTAAAAGCCGCACAAGAAGACGAAAATGTCTTCGGTCAGCTGTTTTGTCT
GGCGAATGCCACCGCAGGCAGTTTGGAAGCGTTGTGGGAGGAAGTCGGGT
GCTCCTCGGAAGAGAGGCGCGAGCATTTGAAAGGAAAAGCGCTAAGCCTG
GTCGTCGAGTTCGAGCGTCTGTGCACGGAGAAAGTGCGGGAGGAAGAAAG
TGTGCGGGACCAATTCCGGTCCAGCATCGCCCAGTTACGACAGGAAATGG
TGGAGCTGACGGCATGCTTGGGGATGAGCGAAGACGCCGGGAACAAAAAA
ATCGCAATCCCTGCGTCCCCAGTATCGTGCAACCTAAAAGCCGCACAAGA
AGACGAAAATGTCTTCGGTCAGCTGTTTTGTCTGGCGAATGCCACCGCAG
GCAGTTTGGAAGCGTTGTGGGAGGAAGTCGGGTGCTCCTCGGAAGAGAGG
CGCGAGCATTTGAAAGGAAAAGCGCTAAGCCTGGTCGTCGAGTTCGAGCG
TCTGTGCACGGAGAAAGTGCGGGAGGAAGAAAGTGTGCGGGACCAATTCC
GGTCCAGCATCGCCCAGTTACGACAGGAAATGGTGGAGCTGACGGCATGC
TTGGGGATGAGCGAAGACGCCGGGAACAAAAAAATCGCAATCCCTGCGTC
CCCAGTATCGTGCAACCTAAAAGCCGCACAAGAAGACGAAAATGTCTTCG
GTCAGCTGTTTTGTCTGGCGAATGCCACCGCAGGCAGTTTGGAAGCGTTG
TGGGAGGAAGTCGGGTGCTCCTCGGAAGAGAGGCGCGAGCATTTGAAAG
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Synonyms
Publications