EWM29510.1, cds1163 (CDS) Nannochloropsis gaditana

Overview
NameEWM29510.1
Unique Namecds1163
TypeCDS
OrganismNannochloropsis gaditana (N. gaditana B-31)
Alignment locationCM002456.1:1369101..1369293 -
Alignment locationCM002456.1:1368663..1368790 -
Alignment locationCM002456.1:1368426..1368437 -

Link to JBrowse

Properties
Property NameValue
Protein idEWM29510.1
Producthypothetical protein
Orig transcript idgnl|cribi|Naga_101392g1.6243.mrna
GbkeyCDS
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
CM002456.1supercontigCM002456.1:1369101..1369293 -
CM002456.1supercontigCM002456.1:1368663..1368790 -
CM002456.1supercontigCM002456.1:1368426..1368437 -
Analyses
This CDS is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST analysis for N. gaditana B-312020-04-07
InterPro analysis for N. gaditana B-312020-04-06
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
Homology
BLAST of EWM29510.1 vs. NCBI_GenBank
Match: gi|585112078|gb|EWM29510.1| (hypothetical protein Naga_101392g1 [Nannochloropsis gaditana])

HSP 1 Score: 221.476 bits (563), Expect = 4.178e-73
Identity = 110/110 (100.00%), Postives = 110/110 (100.00%), Query Frame = 0
Query:    1 MSEDAGNKKIAIPASPVSCNLKAAQEDENVFGQLFCLANATAGSLEALWEEVGCSSEERREHLKGLVVEFERLCTEKVREEESVRDQFRSSIAQLRQEMVELTACLGEKR 110
            MSEDAGNKKIAIPASPVSCNLKAAQEDENVFGQLFCLANATAGSLEALWEEVGCSSEERREHLKGLVVEFERLCTEKVREEESVRDQFRSSIAQLRQEMVELTACLGEKR
Sbjct:    1 MSEDAGNKKIAIPASPVSCNLKAAQEDENVFGQLFCLANATAGSLEALWEEVGCSSEERREHLKGLVVEFERLCTEKVREEESVRDQFRSSIAQLRQEMVELTACLGEKR 110          
BLAST of EWM29510.1 vs. NCBI_GenBank
Match: gi|553180532|ref|XP_005853419.1| (hypothetical protein NGA_0446400, partial [Nannochloropsis gaditana CCMP526] >gi|422295644|gb|EKU22943.1| hypothetical protein NGA_0446400, partial [Nannochloropsis gaditana CCMP526])

HSP 1 Score: 216.083 bits (549), Expect = 4.965e-71
Identity = 107/107 (100.00%), Postives = 107/107 (100.00%), Query Frame = 0
Query:    1 MSEDAGNKKIAIPASPVSCNLKAAQEDENVFGQLFCLANATAGSLEALWEEVGCSSEERREHLKGLVVEFERLCTEKVREEESVRDQFRSSIAQLRQEMVELTACLG 107
            MSEDAGNKKIAIPASPVSCNLKAAQEDENVFGQLFCLANATAGSLEALWEEVGCSSEERREHLKGLVVEFERLCTEKVREEESVRDQFRSSIAQLRQEMVELTACLG
Sbjct:    1 MSEDAGNKKIAIPASPVSCNLKAAQEDENVFGQLFCLANATAGSLEALWEEVGCSSEERREHLKGLVVEFERLCTEKVREEESVRDQFRSSIAQLRQEMVELTACLG 107          
BLAST of EWM29510.1 vs. NCBI_GenBank
Match: gi|299117069|emb|CBN73840.1| (conserved unknown protein [Ectocarpus siliculosus])

HSP 1 Score: 64.3142 bits (155), Expect = 1.001e-9
Identity = 32/77 (41.56%), Postives = 47/77 (61.04%), Query Frame = 0
Query:   32 GQLFCLANATAGSLEALWEEVGCSSEERREHLKGLVVEFERLCTEKVREEESVRDQFRSSIAQLRQEMVELTACLGE 108
            G++  LA  T   LE LW+EVG +SEE+R  ++GLV  F+ LC  K ++EE V+ QF +SIA  +  +      LG+
Sbjct:   13 GRIVELAKQTTSRLEVLWDEVGYTSEEKRRQMQGLVDGFQTLCENKEKQEEGVKSQFVTSIADAKDRIKTARKKLGQ 89          
BLAST of EWM29510.1 vs. NCBI_GenBank
Match: gi|1210527470|dbj|GAX13755.1| (hypothetical protein FisN_30Lh041 [Fistulifera solaris])

HSP 1 Score: 60.077 bits (144), Expect = 2.989e-8
Identity = 29/73 (39.73%), Postives = 45/73 (61.64%), Query Frame = 0
Query:   34 LFCLANATAGSLEALWEEVGCSSEERREHLKGLVVEFERLCTEKVREEESVRDQFRSSIAQLRQEMVELTACL 106
            L  LA +T   LE +W+EVG S E+R   L  L+V+F+ +C EK+ EE +V + FR +I Q + E+ +  + L
Sbjct:   80 LATLAASTGNQLEEIWDEVGYSPEDRAAQLSDLLVKFQDICAEKIAEERNVAETFRQTIVQAKDEIKKTASAL 152          
BLAST of EWM29510.1 vs. NCBI_GenBank
Match: gi|1210519257|dbj|GAX21841.1| (hypothetical protein FisN_30Hh041 [Fistulifera solaris])

HSP 1 Score: 60.077 bits (144), Expect = 3.293e-8
Identity = 29/73 (39.73%), Postives = 45/73 (61.64%), Query Frame = 0
Query:   34 LFCLANATAGSLEALWEEVGCSSEERREHLKGLVVEFERLCTEKVREEESVRDQFRSSIAQLRQEMVELTACL 106
            L  LA +T   LE +W+EVG S E+R   L  L+V+F+ +C EK+ EE +V + FR +I Q + E+ +  + L
Sbjct:   79 LATLAASTGNQLEEIWDEVGYSPEDRAAQLSDLLVKFQDICAEKIAEERNVAETFRQTIVQAKDEIKKTASAL 151          
BLAST of EWM29510.1 vs. NCBI_GenBank
Match: gi|219110311|ref|XP_002176907.1| (MAP65_ASE1 [Phaeodactylum tricornutum CCAP 1055/1] >gi|217411442|gb|EEC51370.1| MAP65_ASE1 [Phaeodactylum tricornutum CCAP 1055/1])

HSP 1 Score: 58.9214 bits (141), Expect = 7.378e-8
Identity = 32/72 (44.44%), Postives = 45/72 (62.50%), Query Frame = 0
Query:   34 LFCLANATAGSLEALWEEVGCSSEERREHLKGLVVEFERLCTEKVREEESVRDQFRSSIAQLRQEMVELTAC 105
            L  LA +TA  LE  W+EVG S E+R   L  L+V+F  LC  K+ EE+ V + FR +IA+ ++E +E TA 
Sbjct:   74 LTTLAASTAHQLEETWDEVGYSPEDRASQLSDLLVKFRDLCEHKIAEEKGVAETFRQTIAEAKEE-IETTAS 144          
The following BLAST results are available for this feature:
BLAST of EWM29510.1 vs. NCBI_GenBank
Analysis Date: 2020-04-07 (BLAST analysis for N. gaditana B-31)
Total hits: 6
Match NameE-valueIdentityDescription
gi|585112078|gb|EWM29510.1|4.178e-73100.00hypothetical protein Naga_101392g1 [Nannochloropsi... [more]
gi|553180532|ref|XP_005853419.1|4.965e-71100.00hypothetical protein NGA_0446400, partial [Nannoch... [more]
gi|299117069|emb|CBN73840.1|1.001e-941.56conserved unknown protein [Ectocarpus siliculosus][more]
gi|1210527470|dbj|GAX13755.1|2.989e-839.73hypothetical protein FisN_30Lh041 [Fistulifera sol... [more]
gi|1210519257|dbj|GAX21841.1|3.293e-839.73hypothetical protein FisN_30Hh041 [Fistulifera sol... [more]
gi|219110311|ref|XP_002176907.1|7.378e-844.44MAP65_ASE1 [Phaeodactylum tricornutum CCAP 1055/1]... [more]
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Relationships

This CDS is a part of the following mRNA feature(s):

Feature NameUnique NameSpeciesType
rna1164rna1164Nannochloropsis gaditana (N. gaditana B-31)mRNA


Sequences
Synonyms
Publications