rna1162, rna1162 (mRNA) Nannochloropsis gaditana | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	rna1162
Unique Name	rna1162
Type	mRNA
Organism	Nannochloropsis gaditana (N. gaditana B-31)
Sequence length	3398
Alignment location	CM002456.1:1363865..1365411 +

Link to JBrowse

Properties


Property Name	Value
Product	60s ribosomal protein l34
Orig transcript id	gnl\|cribi\|Naga_100006g3.8699.mrna
Orig protein id	gnl\|cribi\|Naga_100006g3.8699
Gbkey	mRNA

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
CM002456.1	supercontig	CM002456.1:1363865..1365411 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. gaditana B-31	2014-02-18

Annotated Terms

Homology

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
Naga_100006g3	gene1119	Nannochloropsis gaditana (N. gaditana B-31)	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
rna1162	rna1162-protein	Nannochloropsis gaditana (N. gaditana B-31)	polypeptide

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
EWM29610.1	cds1161	Nannochloropsis gaditana (N. gaditana B-31)	CDS

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at CM002456.1:1363865..1365411+
coding sequence from alignment at CM002456.1:1363865..1365411+

mRNA sequence

>rna1162 ID=rna1162|Name=rna1162|organism=Nannochloropsis gaditana|type=mRNA|length=3398bp
TGACCGGGCCCTGAATGTTGACCGCGGAGAATGTGGCATACCAATTGACT
TTTCGTCATGTGTTACTAACTGGGAAAAATATCATTCACATTGTCAGGGG
AAAGTTTGTTGCCATTGCCCACTGTTCGGTGAGAGACATCACGTGCTGTA
AAAGCTGGCTTTGCTCGCGCTAGCAGCGTCTCATAAGAGGCTCAGGTTGG
CCCGGAGGGCCGTGCCCTATTAGTCTGCATGGTCAACATGAGGTCAAACG
AGGCAAAGCGGAGCCCGCGGTCGAATTTACGAGGAATATTCAATCTAGGC
AGAGATGCACGGATAAGCGGACTACTGGCCTTGCTCACCTCCAGCTGGTT
CCTTGACGGTGTGGCATTCCATTCGCCTTCTTTTCATTCCTGCAGTAGGG
GGCATGCCAGATGTTTTACGACACAGCCAGCTAAAAAGGTGACAATGGAG
ATGGTGACCGGGCATGGCAGCTCGAGCCCTATCCCTCCCGCTCGTGCCCA
CCCTCCCAAGCGTCTCCCAGGTCGTCGTCCCCCGCCCTCGACACAGCACC
GCAACCTGCATGGTGGGGGTGGACTGTGGGAGATCAACAATGAGATTAAT
TTCTGGAGCAAACAACGCAATTTCGACCAGGTCCTTGCCCTGGCTCAAAA
AGTGGAAACGGAAGGGCTGCGCCCGAACATCTACACGTTCCACGCCCTGT
TGAACGCGGCAATTGCCTGTCGTCGGGGCGAGGCGGAAACGCTGGCCGTG
TGGCAGAAAATGACAGAGGAACACGGGCTACGACCTACTGTGGTCACGTA
CAACATTTTGTTGAAGCGCTTTTTTGGCAGGGGCACTCCGGCGGCCCAAC
GCCAGGCCCTCGCGGTCCTGAACGAAATGCGGCAAGGGGGCGTGGAGCCG
GACGTGTTGACCTTTAACGAGTTGATCAACATTTGTGTGGAAGGTGGGGA
CATGAAGGCAGCCGCGGGGTTGATGCAAGCCATGGTGCACCGGGGCATGG
CCCCCGATACCCGGACGTACACCACCCTGATCAAAGGACACGGCCTAAAA
GGGAATTTGATGGACGCTTTCGAGACGGTCAAGACCATGCGCGCCCAGGC
ATTGCCCCTGAGCACGTATTCCTGTAACGTGTTGGCGGATGCGTGCATCC
GGTGCGGCCAACCGTCCCGGGCGCTCGCCCTTTATCGGGAATTCGAAGCC
GAGGCCGACGAGGCCGGGGGCGAGGCCGGGCGGACGTTGGACTTGAAAAG
TTTCAACATCATGATCAAGGCGTACCGAGGGCTGGGGCACGTCGAGGGCG
CCCGGGCGGCCTTGCATGCCCTCGAACGTCGAGGGTTCAAAGCCGACACA
GTGACCTACAACACGCTCGTGGACCTCCACTGTAAGGCCCAAAACCTGGG
GGGCGCCCGATCCCTGATCGAAAAAATGAAGGAGAATGCCGTACCGGTCA
CGCACCAGACGATTCATCCCCTTGTGCAAGAGGAGATCATCGCCCACGGG
GTGTCGTGGGAGGAAGCCCTGGACCTGGCCACGGCGTTGCTCGGTGCGCA
TGGCCTCAAGCAGAACGACGTGACCATTTGCACGGTCATGGAAGCCATGT
TGAGCCTGGAGCGGCCCCGGGACGCGATCCAAGTCTTTGTGCGAAGCTTT
TTTGCGCCGAGGGAAGGTGTGAGTCCGGCGGAGGGAGGGAAGGGGAGAGA
GCGGTCGGAAAGAGGAAAAGAGGCTATGGGCCGAGTGCCCCGTCCGCGGG
TCATTCCCAGCCTAGTGGCTTTCAACGGACTGATCAAGGCCTACCGCGAT
TACGTGGTAGGTCTGGACATGGAGGGAGAGGGGGGGGACATGGCCCCCCT
CCCCCTCCTTGTTTTCCCTCCCAACGGCGGTTCGCCCCTGTGGACGCAAG
CCACCACCCCGCGGGCTGTCTTGGAGGCCGCTGTACACCTCCCTTCCTAT
TTGCAGACCTTGGCTGCCATTACTCCTACAGCAACGGCTCCGTCTCCTTC
GTCTTCCTCGCCACATTCCAGAGCCCCAGGCGCCGCGCGCCGCTCTTTCG
GCACCTCTCATCTCTTTGGCGGCCCGGACTCCATCACGTACAACATATTG
ATGGATTTCGCGGGAGAGCTCGGTGACGTTGAGGCCTTGGAAACAATCCA
CGCGGCCCGGAACGCCGCAGGGTTCGCCATTGACCATTACGTCATCCATT
CGTACATGAAGGCGCATGCCGTACGGGGGAACTTGGCCGGGGTGACCGAA
GCGAAGGAGAAAATGGAAGCTTTGCGAGTACCAGCCAATGAAAGGACTTT
CAGTGTCTTGGTCTTGTCGCTTCTGCGGTGTGGGCAAGTGGAGAAGGCGG
AGCTGCTCCTCAAGAACGCGCTGGCTCGACAGACCTACGTCCATGACTCG
CTCTTCGTGGCATTTATACAGCACTACACGTCTGCCCCTTCGTCTTCCCA
GCAGCCCTCGGCACCGGAGAAGCCAACCTCCCGCCTGGTGGCGGCGCGGG
AGATTTTTGAAGCTTTCAAAGCTCGTCGCAATCCGGGGGCACCGATGCCG
GCAGCGCCCCAACAGTCGCACGGAAAATGGGCGGGTGCGGTCTGGAGCGC
CTGGATGGCCGCCTTGGCCCGCAAGGGGGACCTGGACGGGGTCCTGGCGG
CGTGGAAGGAGATGACGCTATGTCCTTCCTTGGGCGTGCGGCCGACCCGA
AGCACCTACGCGCAAGTTATCCGGGCCGCCTGTGTGGCGGGGGAGGTAGA
GACGGCATTGCAATGGGTGCAAAATATGCGGGGAAAAAAGTGGGTGCCGG
ACGTGCGCGTGTACAACGGCTTGATTTACGCCTGCCTAGAGAAAGAGATG
GGTAAAGCGGACAGGAAAGGGAGCAAGGGGGGCGGAGGCCAACGACTGCT
GGTAGAGGTTCTTGAGATGATGGAAAGGGACGGAGTGCAGCCTAACGCCA
TCACCTTGAGAGCTAAGGAGGGAGTCATGCGCGTGCTTGCCTCACGGATG
CGGGCCGTGTCGGACACGATGGTTGGAAAGTTAAAAATGCTGGCTTTGAG
CAAGCAGTGGGCCGAGAGGACCGAGGGAAAAGGGTAAATGAAGGGAAAGA
GAACCTTCACTTACCTGCTTGTAATTTGAGGTGCGTAGAAAAGCAATGCT
AGTCAACTGTAATGAATAAATCGATGCATTCCGTACATGGCCAATGCTTG
TACATTGTACGCGATATTATCATCATTTGATACGTGTCTTCAAGCTATTT
ACGATACAAATATTTTTTTCGCGCGATGTATTAGCCTTTTCGATCAACCT
CGTCTAATGCTTACACATCCTTTTAAAAACGCCTTGAAAAGCTTAGCTTT
TGCAGAAGACTCGTATGAGCCACATCTAAACTTGGGGGCTTTTTGACA

protein sequence of rna1162

>rna1162-protein ID=rna1162-protein|Name=rna1162|organism=Nannochloropsis gaditana|type=polypeptide|length=114bp
MGKDTRVTYQRRHAYATRSNGRVIVKTPGGRLTLHQIKKKTRGPHCGDCK
IALPGIKHLKTKEYKNLHKRERTVSRAYGGSRCASCVRSRIVRAFLIEEQ
KIVKRVLNEKKSKK

mRNA from alignment at CM002456.1:1363865..1365411+

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>rna1162 ID=rna1162|Name=rna1162|organism=Nannochloropsis gaditana|type=mRNA|length=1547bp|location=Sequence derived from alignment at CM002456.1:1363865..1365411+ (Nannochloropsis gaditana)
ACTGTCCTGTGCGATTTTGTGTGTCGGTCGTCTCGgggtcgggaggaagg
aatgcgATAATTTGCGTCTAGTTAATGGAATGGTCAGGGGCTGTGACCGG
AGGGATGGATGCACTCGTACTATTTGCATTTCTTCCAGCCATCGagagcc
ccccccttctgctATGTTTTTTTCTCTAGGCTAGCGAGAGCGCTCACCGT
TCCTCCTAACATATTCACCAACCCACCATTTACATCAGTCCAAGACATTG
TACCATGGGCAAGGACACGCGAGTCACTTACCAACGGCGTCATGCTTACG
CGACCAGGTCAAATGGGCGTGTTATTGTCAAGACTCCAGGTACGCTTCTT
GAGGAAAGGGTGTCCGTCATGATGCCTAAGAATTTGATATTAAAACCCTG
AGCACACCTCACTTTGCGACATTCTAGGTGGCCGACTGACTCTTCATCAA
ATTAAGAAGAAAACGCGCGGCCCTCACTGTGGTGACTGCAAGATTGCCCT
GCCAGGCATCAAGCACCTCAAAACCAAGGTAAGGAGGAAGTTCGTctgcc
tccagcccctcttcTACCTCACACTCTGTCTGATTTGCGTTTTTAGCACA
TGACATCTGGCTTTCGGTTGACTTCATTCTGGCGGACCATGCAATGTACT
CAGGGCGAAGTGAAAATGGAGCGCTTTCTGGCCATACTTTCGTTGTagtc
accctccctctcccctcctgcctccgcatTTTTCATACCCTCAGGAATAC
AAGAACCTACACAAGCGAGAGCGCACGGTATCTAGGGCTTACGGTGGATC
GCGATGCGCTTCCTGCGTCCGAAGTCGGTGCGTAGGtgtggtggaaggag
aggagggaagaggagggttagaaggagagaggagggactgaaggaggatg
aagtgGAATGATGAATGAGAATCCCTACCTCTGCACTCGTGAGACGCGTT
cctggaaaggaagcggTGAGCGAAGCAAAACACATAATTAGTCTTTCGTT
CTGACGCTGGGTTAAAATCTGCAGGATGGTtttgacaaggaggaggaaga
ggaagatgaagaggagaaagcggagaaaagaaaggcttGAAGGTGCATTA
GTGACATTTTTTAACGCCTTGTTCCTTCCATTATTTTCACCTTGGACAGG
ATTGTGCGCGCGTTCTTAATCGAGGAGCAAAAGATTGTGAAGCGAGTCTT
GAACGAGAAGAAGTCCAAGAAGTAACGGGAGGGCGGATAGCAACAagggg
gtggacgaggagggaaaaaacgcgacgagaagaggaaggtcggGCGTCTG
TATTGCAGCAGCGCATGGCTTGGCCCGTCGGAGAGGGGCTGGTGGCTTTC
GATGACGTTCGACGACGACcataggggagggaggccatgtAGCCCATCCG
GAGGTaccaagggaaaggagcagggaAGAAGATACAACAAATGGAGGACA
GACAAGGCCTGCGTCCCAGAAAGAATGGGTGTGGGCCGGGCTGGCGGGAA
GCAATTTTGTTTGCTTTGGCGGAAGCACAGTGCACgcaccttttctt

Coding sequence (CDS) from alignment at CM002456.1:1363865..1365411+

>rna1162 ID=rna1162|Name=rna1162|organism=Nannochloropsis gaditana|type=CDS|length=1380bp|location=Sequence derived from alignment at CM002456.1:1363865..1365411+ (Nannochloropsis gaditana)
ATGGGCAAGGACACGCGAGTCACTTACCAACGGCGTCATGCTTACGCGAC
CAGGTCAAATGGGCGTGTTATTGTCAAGACTCCAGGTGGCCGACTGACTC
TTCATCAAATTAAGAAGAAAACGCGCGGCCCTCACTGTGGTGACTGCAAG
ATTGCCCTGCCAGGCATCAAGCACCTCAAAACCAAGGAATACAAGAACCT
ACACAAGCGAGAGCGCACGGTATCTAGGGCTTACGGTGGATCGCGATGCG
CTTCCTGCGTCCGAAGTCGGATTGTGCGCGCGTTCTTAATCGAGGAGCAA
AAGATTGTGAAGCGAGTCTTGAACGAGAAGAAGTCCAAGAAGTAAATGGG
CAAGGACACGCGAGTCACTTACCAACGGCGTCATGCTTACGCGACCAGGT
CAAATGGGCGTGTTATTGTCAAGACTCCAGGTGGCCGACTGACTCTTCAT
CAAATTAAGAAGAAAACGCGCGGCCCTCACTGTGGTGACTGCAAGATTGC
CCTGCCAGGCATCAAGCACCTCAAAACCAAGGAATACAAGAACCTACACA
AGCGAGAGCGCACGGTATCTAGGGCTTACGGTGGATCGCGATGCGCTTCC
TGCGTCCGAAGTCGGATTGTGCGCGCGTTCTTAATCGAGGAGCAAAAGAT
TGTGAAGCGAGTCTTGAACGAGAAGAAGTCCAAGAAGTAAATGGGCAAGG
ACACGCGAGTCACTTACCAACGGCGTCATGCTTACGCGACCAGGTCAAAT
GGGCGTGTTATTGTCAAGACTCCAGGTGGCCGACTGACTCTTCATCAAAT
TAAGAAGAAAACGCGCGGCCCTCACTGTGGTGACTGCAAGATTGCCCTGC
CAGGCATCAAGCACCTCAAAACCAAGGAATACAAGAACCTACACAAGCGA
GAGCGCACGGTATCTAGGGCTTACGGTGGATCGCGATGCGCTTCCTGCGT
CCGAAGTCGGATTGTGCGCGCGTTCTTAATCGAGGAGCAAAAGATTGTGA
AGCGAGTCTTGAACGAGAAGAAGTCCAAGAAGTAAATGGGCAAGGACACG
CGAGTCACTTACCAACGGCGTCATGCTTACGCGACCAGGTCAAATGGGCG
TGTTATTGTCAAGACTCCAGGTGGCCGACTGACTCTTCATCAAATTAAGA
AGAAAACGCGCGGCCCTCACTGTGGTGACTGCAAGATTGCCCTGCCAGGC
ATCAAGCACCTCAAAACCAAGGAATACAAGAACCTACACAAGCGAGAGCG
CACGGTATCTAGGGCTTACGGTGGATCGCGATGCGCTTCCTGCGTCCGAA
GTCGGATTGTGCGCGCGTTCTTAATCGAGGAGCAAAAGATTGTGAAGCGA
GTCTTGAACGAGAAGAAGTCCAAGAAGTAA

Synonyms

Publications