EWM29610.1, cds1161 (CDS) Nannochloropsis gaditana
Overview
Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Analyses
This CDS is derived from or has results from the following analyses
Annotated Terms
The following terms have been associated with this CDS:
Homology
BLAST of EWM29610.1 vs. NCBI_GenBank
Match: gi|553180526|ref|XP_005853417.1| (large subunit ribosomal protein L34e [Nannochloropsis gaditana CCMP526] >gi|553188041|ref|XP_005854724.1| large subunit ribosomal protein L34e [Nannochloropsis gaditana CCMP526] >gi|422294337|gb|EKU21637.1| large subunit ribosomal protein L34e [Nannochloropsis gaditana CCMP526] >gi|422295642|gb|EKU22941.1| large subunit ribosomal protein L34e [Nannochloropsis gaditana CCMP526] >gi|585112181|gb|EWM29610.1| 60s ribosomal protein l34 [Nannochloropsis gaditana]) HSP 1 Score: 230.335 bits (586), Expect = 1.683e-76 Identity = 114/114 (100.00%), Postives = 114/114 (100.00%), Query Frame = 0 Query: 1 MGKDTRVTYQRRHAYATRSNGRVIVKTPGGRLTLHQIKKKTRGPHCGDCKIALPGIKHLKTKEYKNLHKRERTVSRAYGGSRCASCVRSRIVRAFLIEEQKIVKRVLNEKKSKK 114 MGKDTRVTYQRRHAYATRSNGRVIVKTPGGRLTLHQIKKKTRGPHCGDCKIALPGIKHLKTKEYKNLHKRERTVSRAYGGSRCASCVRSRIVRAFLIEEQKIVKRVLNEKKSKK Sbjct: 1 MGKDTRVTYQRRHAYATRSNGRVIVKTPGGRLTLHQIKKKTRGPHCGDCKIALPGIKHLKTKEYKNLHKRERTVSRAYGGSRCASCVRSRIVRAFLIEEQKIVKRVLNEKKSKK 114
BLAST of EWM29610.1 vs. NCBI_GenBank
Match: gi|676390815|ref|XP_009038685.1| (hypothetical protein AURANDRAFT_29090 [Aureococcus anophagefferens] >gi|323450621|gb|EGB06501.1| hypothetical protein AURANDRAFT_29090 [Aureococcus anophagefferens]) HSP 1 Score: 161.384 bits (407), Expect = 3.273e-49 Identity = 79/111 (71.17%), Postives = 89/111 (80.18%), Query Frame = 0 Query: 3 KDTRVTYQRRHAYATRSNGRVIVKTPGGRLTLHQIKKKTRGPHCGDCKIALPGIKHLKTKEYKNLHKRERTVSRAYGGSRCASCVRSRIVRAFLIEEQKIVKRVLNEKKSK 113 KDTRVT++RRHAY T+SN VKTPGGRL H KK +GP CGDCK +LPGIKHL + YKN HKRERTVSRAYGGSRCA CVR R+VRAFLIEEQKIVK+++ EK K Sbjct: 2 KDTRVTFKRRHAYNTKSNVLKAVKTPGGRLVGHYASKKRQGPKCGDCKCSLPGIKHLSSFSYKNTHKRERTVSRAYGGSRCAGCVRQRVVRAFLIEEQKIVKQMMMEKSKK 112
BLAST of EWM29610.1 vs. NCBI_GenBank
Match: gi|673038080|ref|XP_008873001.1| (hypothetical protein H310_08870 [Aphanomyces invadans] >gi|574471118|gb|ETV98126.1| hypothetical protein H310_08870 [Aphanomyces invadans]) HSP 1 Score: 160.999 bits (406), Expect = 5.042e-49 Identity = 80/114 (70.18%), Postives = 92/114 (80.70%), Query Frame = 0 Query: 1 MGKDTRVTYQRRHAYATRSNGRVIVKTPGGRLTLHQIKKKTRGPHCGDCKIALPGIKHLKTKEYKNLHKRERTVSRAYGGSRCASCVRSRIVRAFLIEEQKIVKRVLNEKKSKK 114 M K+ R+TY+RRH+YAT+SN V VKTPGG+L H +KK + GP CGDCK AL GIKH +K YKN+ K E+TVSRAYGGSRCA CVR RIVRAFLIEEQKIVK+VL EK SKK Sbjct: 1 MVKNVRITYRRRHSYATKSNRIVPVKTPGGKLVAHYVKKHSHGPKCGDCKQALKGIKHFASKAYKNIAKSEKTVSRAYGGSRCAGCVRQRIVRAFLIEEQKIVKKVLLEKLSKK 114
BLAST of EWM29610.1 vs. NCBI_GenBank
Match: gi|66270183|gb|AAY43421.1| (ribosomal protein L34 [Phytophthora infestans]) HSP 1 Score: 159.073 bits (401), Expect = 3.092e-48 Identity = 77/110 (70.00%), Postives = 89/110 (80.91%), Query Frame = 0 Query: 1 MGKDTRVTYQRRHAYATRSNGRVIVKTPGGRLTLHQIKKKTRGPHCGDCKIALPGIKHLKTKEYKNLHKRERTVSRAYGGSRCASCVRSRIVRAFLIEEQKIVKRVLNEK 110 M K+ R+TY+RRH+YAT+SN VKTPGG+L IKK+ GP CGDCK L GIKHL++KEYKN+ K +RTVSRAYGGSRCA CVR RIVRAFLIEEQKIVK+VL EK Sbjct: 1 MVKNVRITYRRRHSYATKSNAIKAVKTPGGKLVAQYIKKRAAGPKCGDCKQTLKGIKHLQSKEYKNVSKTQRTVSRAYGGSRCALCVRQRIVRAFLIEEQKIVKKVLMEK 110
BLAST of EWM29610.1 vs. NCBI_GenBank
Match: gi|669141898|ref|XP_008606511.1| (50S ribosomal protein L34e [Saprolegnia diclina VS20] >gi|813170635|ref|XP_012204073.1| 50S ribosomal protein L34e [Saprolegnia parasitica CBS 223.65] >gi|530741795|gb|EQC40037.1| 50S ribosomal protein L34e [Saprolegnia diclina VS20] >gi|641531149|gb|KDO25238.1| 50S ribosomal protein L34e [Saprolegnia parasitica CBS 223.65]) HSP 1 Score: 158.303 bits (399), Expect = 6.070e-48 Identity = 80/114 (70.18%), Postives = 92/114 (80.70%), Query Frame = 0 Query: 1 MGKDTRVTYQRRHAYATRSNGRVIVKTPGGRLTLHQIKKKTRGPHCGDCKIALPGIKHLKTKEYKNLHKRERTVSRAYGGSRCASCVRSRIVRAFLIEEQKIVKRVLNEKKSKK 114 M K+ R+TY+RRH+YAT+SN V VKTPGG+L H KK + GP CGDCK +L GIKHL +K YKN+ K +RTVSRAYGGSRCA CVR RIVRAFLIEEQKIVK+VL EK SKK Sbjct: 1 MVKNVRITYRRRHSYATKSNRIVPVKTPGGKLIAHYRKKTSSGPKCGDCKQSLKGIKHLASKAYKNVSKSQRTVSRAYGGSRCAGCVRQRIVRAFLIEEQKIVKKVLLEKLSKK 114
BLAST of EWM29610.1 vs. NCBI_GenBank
Match: gi|1173936022|gb|OQR87055.1| (ribosomal protein L34 [Achlya hypogyna]) HSP 1 Score: 157.918 bits (398), Expect = 7.810e-48 Identity = 79/114 (69.30%), Postives = 91/114 (79.82%), Query Frame = 0 Query: 1 MGKDTRVTYQRRHAYATRSNGRVIVKTPGGRLTLHQIKKKTRGPHCGDCKIALPGIKHLKTKEYKNLHKRERTVSRAYGGSRCASCVRSRIVRAFLIEEQKIVKRVLNEKKSKK 114 M K+ R+TY+RRH+YAT+SN V VKTPGG+L H K + GP CGDCK +L GIKHL +K YKN+ K +RTVSRAYGGSRCA CVR RIVRAFLIEEQKIVK+VL EK SKK Sbjct: 1 MVKNVRITYRRRHSYATKSNRIVAVKTPGGKLVAHYRKNTSTGPKCGDCKQSLKGIKHLASKAYKNVSKSQRTVSRAYGGSRCAGCVRQRIVRAFLIEEQKIVKKVLLEKLSKK 114
BLAST of EWM29610.1 vs. NCBI_GenBank
Match: gi|695385813|ref|XP_009518381.1| (hypothetical protein PHYSODRAFT_310652 [Phytophthora sojae] >gi|348683278|gb|EGZ23093.1| hypothetical protein PHYSODRAFT_310652 [Phytophthora sojae]) HSP 1 Score: 157.147 bits (396), Expect = 1.515e-47 Identity = 78/110 (70.91%), Postives = 89/110 (80.91%), Query Frame = 0 Query: 1 MGKDTRVTYQRRHAYATRSNGRVIVKTPGGRLTLHQIKKKTRGPHCGDCKIALPGIKHLKTKEYKNLHKRERTVSRAYGGSRCASCVRSRIVRAFLIEEQKIVKRVLNEK 110 M K+ R+TY+RRH+YATRSNG VKTPGG+L KK+ GP CGDCK +L GIKHL++KEYKN+ K RTVSRAYGGSRCA CVR RIVRAFLIEEQKIVK+VL EK Sbjct: 1 MVKNVRITYRRRHSYATRSNGIKAVKTPGGKLVAQYRKKRAAGPKCGDCKQSLKGIKHLQSKEYKNVSKTHRTVSRAYGGSRCAICVRQRIVRAFLIEEQKIVKKVLMEK 110
BLAST of EWM29610.1 vs. NCBI_GenBank
Match: gi|1173952670|gb|OQS00295.1| (ribosomal protein L34 [Thraustotheca clavata]) HSP 1 Score: 156.377 bits (394), Expect = 3.176e-47 Identity = 79/114 (69.30%), Postives = 89/114 (78.07%), Query Frame = 0 Query: 1 MGKDTRVTYQRRHAYATRSNGRVIVKTPGGRLTLHQIKKKTRGPHCGDCKIALPGIKHLKTKEYKNLHKRERTVSRAYGGSRCASCVRSRIVRAFLIEEQKIVKRVLNEKKSKK 114 M K+ R+TY+RRH+YAT+SN V VKTPGG+L KK GP CGDCK AL GIKHL K YK + K +RTVSRAYGGSRCA+CVR RIVRAFLIEEQKIVK+VL EK SKK Sbjct: 1 MVKNVRITYRRRHSYATKSNRIVAVKTPGGKLVAQYRKKSVSGPKCGDCKQALKGIKHLSVKAYKTVSKSQRTVSRAYGGSRCANCVRQRIVRAFLIEEQKIVKKVLLEKLSKK 114
BLAST of EWM29610.1 vs. NCBI_GenBank
Match: gi|675192357|ref|XP_008905063.1| (hypothetical protein PPTG_11487 [Phytophthora parasitica INRA-310] >gi|566024603|gb|ETI47514.1| hypothetical protein F443_08294 [Phytophthora parasitica P1569] >gi|567961918|gb|ETK87453.1| hypothetical protein L915_08125 [Phytophthora parasitica] >gi|567990652|gb|ETL40877.1| hypothetical protein L916_08047 [Phytophthora parasitica] >gi|568019896|gb|ETL94036.1| hypothetical protein L917_07941 [Phytophthora parasitica] >gi|568050326|gb|ETM47272.1| hypothetical protein L914_08007 [Phytophthora parasitica] >gi|568095147|gb|ETN09917.1| hypothetical protein PPTG_11487 [Phytophthora parasitica INRA-310] >gi|570328287|gb|ETO76235.1| hypothetical protein F444_08357 [Phytophthora parasitica P1976] >gi|570952052|gb|ETP17309.1| hypothetical protein F441_08276 [Phytophthora parasitica CJ01A1] >gi|570986307|gb|ETP45360.1| hypothetical protein F442_08239 [Phytophthora parasitica P10297] >gi|970662517|gb|KUF99899.1| ADP-ribosylation factor protein 2-binding protein [Phytophthora nicotianae] >gi|970663595|gb|KUG00725.1| 60S ribosomal protein L34-B [Phytophthora nicotianae]) HSP 1 Score: 155.606 bits (392), Expect = 7.506e-47 Identity = 76/110 (69.09%), Postives = 88/110 (80.00%), Query Frame = 0 Query: 1 MGKDTRVTYQRRHAYATRSNGRVIVKTPGGRLTLHQIKKKTRGPHCGDCKIALPGIKHLKTKEYKNLHKRERTVSRAYGGSRCASCVRSRIVRAFLIEEQKIVKRVLNEK 110 M K+ R+TY+RRH+YAT+SN VKTPGG+L KK+ GP CGDCK L GIKHL++KEYKN+ K +RTVSRAYGGSRCA CVR RIVRAFLIEEQKIVK+VL EK Sbjct: 1 MVKNVRITYRRRHSYATKSNAIKAVKTPGGKLVAQYRKKRAAGPKCGDCKQTLKGIKHLQSKEYKNVSKTQRTVSRAYGGSRCALCVRQRIVRAFLIEEQKIVKKVLMEK 110
BLAST of EWM29610.1 vs. NCBI_GenBank
Match: gi|301098543|ref|XP_002898364.1| (ribosomal protein L34 [Phytophthora infestans T30-4] >gi|262105135|gb|EEY63187.1| ribosomal protein L34 [Phytophthora infestans T30-4]) HSP 1 Score: 155.221 bits (391), Expect = 7.843e-47 Identity = 76/110 (69.09%), Postives = 88/110 (80.00%), Query Frame = 0 Query: 1 MGKDTRVTYQRRHAYATRSNGRVIVKTPGGRLTLHQIKKKTRGPHCGDCKIALPGIKHLKTKEYKNLHKRERTVSRAYGGSRCASCVRSRIVRAFLIEEQKIVKRVLNEK 110 M K+ R+TY+RRH+YAT+SN VKTPGG+L IKK+ GP CGDCK L GIKHL++KE KN+ K +RTVSRAYGGSRCA CVR RIVRAFLIEEQKIVK+VL EK Sbjct: 1 MVKNVRITYRRRHSYATKSNAIKAVKTPGGKLVAQYIKKRAAGPKCGDCKQTLKGIKHLQSKENKNVSKTQRTVSRAYGGSRCALCVRQRIVRAFLIEEQKIVKKVLMEK 110 The following BLAST results are available for this feature:
BLAST of EWM29610.1 vs. NCBI_GenBank
Analysis Date: 2020-04-07 (BLAST analysis for N. gaditana B-31) Total hits: 10
Relationships
This CDS is a part of the following mRNA feature(s):
Sequences
Synonyms
Publications
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