EWM29610.1, cds1161 (CDS) Nannochloropsis gaditana

Overview
NameEWM29610.1
Unique Namecds1161
TypeCDS
OrganismNannochloropsis gaditana (N. gaditana B-31)
Alignment locationCM002456.1:1364119..1364203 +
Alignment locationCM002456.1:1364292..1364392 +
Alignment locationCM002456.1:1364609..1364691 +
Alignment locationCM002456.1:1365014..1365089 +

Link to JBrowse

Properties
Property NameValue
Protein idEWM29610.1
Product60s ribosomal protein l34
Orig transcript idgnl|cribi|Naga_100006g3.8699.mrna
GbkeyCDS
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
CM002456.1supercontigCM002456.1:1364119..1364203 +
CM002456.1supercontigCM002456.1:1364292..1364392 +
CM002456.1supercontigCM002456.1:1364609..1364691 +
CM002456.1supercontigCM002456.1:1365014..1365089 +
Analyses
This CDS is derived from or has results from the following analyses
Analysis NameDate Performed
GO annotation for N. gaditana B312020-04-08
BLAST analysis for N. gaditana B-312020-04-07
InterPro analysis for N. gaditana B-312020-04-06
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
The following terms have been associated with this CDS:
Vocabulary: Molecular Function
TermDefinition
GO:0005198structural molecule activity
GO:0003735structural constituent of ribosome
Vocabulary: Cellular Component
TermDefinition
GO:0005840ribosome
GO:0005622intracellular
Vocabulary: Biological Process
TermDefinition
GO:0006412translation
Vocabulary: INTERPRO
TermDefinition
IPR008195Ribosomal_L34Ae
Homology
BLAST of EWM29610.1 vs. NCBI_GenBank
Match: gi|553180526|ref|XP_005853417.1| (large subunit ribosomal protein L34e [Nannochloropsis gaditana CCMP526] >gi|553188041|ref|XP_005854724.1| large subunit ribosomal protein L34e [Nannochloropsis gaditana CCMP526] >gi|422294337|gb|EKU21637.1| large subunit ribosomal protein L34e [Nannochloropsis gaditana CCMP526] >gi|422295642|gb|EKU22941.1| large subunit ribosomal protein L34e [Nannochloropsis gaditana CCMP526] >gi|585112181|gb|EWM29610.1| 60s ribosomal protein l34 [Nannochloropsis gaditana])

HSP 1 Score: 230.335 bits (586), Expect = 1.683e-76
Identity = 114/114 (100.00%), Postives = 114/114 (100.00%), Query Frame = 0
Query:    1 MGKDTRVTYQRRHAYATRSNGRVIVKTPGGRLTLHQIKKKTRGPHCGDCKIALPGIKHLKTKEYKNLHKRERTVSRAYGGSRCASCVRSRIVRAFLIEEQKIVKRVLNEKKSKK 114
            MGKDTRVTYQRRHAYATRSNGRVIVKTPGGRLTLHQIKKKTRGPHCGDCKIALPGIKHLKTKEYKNLHKRERTVSRAYGGSRCASCVRSRIVRAFLIEEQKIVKRVLNEKKSKK
Sbjct:    1 MGKDTRVTYQRRHAYATRSNGRVIVKTPGGRLTLHQIKKKTRGPHCGDCKIALPGIKHLKTKEYKNLHKRERTVSRAYGGSRCASCVRSRIVRAFLIEEQKIVKRVLNEKKSKK 114          
BLAST of EWM29610.1 vs. NCBI_GenBank
Match: gi|676390815|ref|XP_009038685.1| (hypothetical protein AURANDRAFT_29090 [Aureococcus anophagefferens] >gi|323450621|gb|EGB06501.1| hypothetical protein AURANDRAFT_29090 [Aureococcus anophagefferens])

HSP 1 Score: 161.384 bits (407), Expect = 3.273e-49
Identity = 79/111 (71.17%), Postives = 89/111 (80.18%), Query Frame = 0
Query:    3 KDTRVTYQRRHAYATRSNGRVIVKTPGGRLTLHQIKKKTRGPHCGDCKIALPGIKHLKTKEYKNLHKRERTVSRAYGGSRCASCVRSRIVRAFLIEEQKIVKRVLNEKKSK 113
            KDTRVT++RRHAY T+SN    VKTPGGRL  H   KK +GP CGDCK +LPGIKHL +  YKN HKRERTVSRAYGGSRCA CVR R+VRAFLIEEQKIVK+++ EK  K
Sbjct:    2 KDTRVTFKRRHAYNTKSNVLKAVKTPGGRLVGHYASKKRQGPKCGDCKCSLPGIKHLSSFSYKNTHKRERTVSRAYGGSRCAGCVRQRVVRAFLIEEQKIVKQMMMEKSKK 112          
BLAST of EWM29610.1 vs. NCBI_GenBank
Match: gi|673038080|ref|XP_008873001.1| (hypothetical protein H310_08870 [Aphanomyces invadans] >gi|574471118|gb|ETV98126.1| hypothetical protein H310_08870 [Aphanomyces invadans])

HSP 1 Score: 160.999 bits (406), Expect = 5.042e-49
Identity = 80/114 (70.18%), Postives = 92/114 (80.70%), Query Frame = 0
Query:    1 MGKDTRVTYQRRHAYATRSNGRVIVKTPGGRLTLHQIKKKTRGPHCGDCKIALPGIKHLKTKEYKNLHKRERTVSRAYGGSRCASCVRSRIVRAFLIEEQKIVKRVLNEKKSKK 114
            M K+ R+TY+RRH+YAT+SN  V VKTPGG+L  H +KK + GP CGDCK AL GIKH  +K YKN+ K E+TVSRAYGGSRCA CVR RIVRAFLIEEQKIVK+VL EK SKK
Sbjct:    1 MVKNVRITYRRRHSYATKSNRIVPVKTPGGKLVAHYVKKHSHGPKCGDCKQALKGIKHFASKAYKNIAKSEKTVSRAYGGSRCAGCVRQRIVRAFLIEEQKIVKKVLLEKLSKK 114          
BLAST of EWM29610.1 vs. NCBI_GenBank
Match: gi|66270183|gb|AAY43421.1| (ribosomal protein L34 [Phytophthora infestans])

HSP 1 Score: 159.073 bits (401), Expect = 3.092e-48
Identity = 77/110 (70.00%), Postives = 89/110 (80.91%), Query Frame = 0
Query:    1 MGKDTRVTYQRRHAYATRSNGRVIVKTPGGRLTLHQIKKKTRGPHCGDCKIALPGIKHLKTKEYKNLHKRERTVSRAYGGSRCASCVRSRIVRAFLIEEQKIVKRVLNEK 110
            M K+ R+TY+RRH+YAT+SN    VKTPGG+L    IKK+  GP CGDCK  L GIKHL++KEYKN+ K +RTVSRAYGGSRCA CVR RIVRAFLIEEQKIVK+VL EK
Sbjct:    1 MVKNVRITYRRRHSYATKSNAIKAVKTPGGKLVAQYIKKRAAGPKCGDCKQTLKGIKHLQSKEYKNVSKTQRTVSRAYGGSRCALCVRQRIVRAFLIEEQKIVKKVLMEK 110          
BLAST of EWM29610.1 vs. NCBI_GenBank
Match: gi|669141898|ref|XP_008606511.1| (50S ribosomal protein L34e [Saprolegnia diclina VS20] >gi|813170635|ref|XP_012204073.1| 50S ribosomal protein L34e [Saprolegnia parasitica CBS 223.65] >gi|530741795|gb|EQC40037.1| 50S ribosomal protein L34e [Saprolegnia diclina VS20] >gi|641531149|gb|KDO25238.1| 50S ribosomal protein L34e [Saprolegnia parasitica CBS 223.65])

HSP 1 Score: 158.303 bits (399), Expect = 6.070e-48
Identity = 80/114 (70.18%), Postives = 92/114 (80.70%), Query Frame = 0
Query:    1 MGKDTRVTYQRRHAYATRSNGRVIVKTPGGRLTLHQIKKKTRGPHCGDCKIALPGIKHLKTKEYKNLHKRERTVSRAYGGSRCASCVRSRIVRAFLIEEQKIVKRVLNEKKSKK 114
            M K+ R+TY+RRH+YAT+SN  V VKTPGG+L  H  KK + GP CGDCK +L GIKHL +K YKN+ K +RTVSRAYGGSRCA CVR RIVRAFLIEEQKIVK+VL EK SKK
Sbjct:    1 MVKNVRITYRRRHSYATKSNRIVPVKTPGGKLIAHYRKKTSSGPKCGDCKQSLKGIKHLASKAYKNVSKSQRTVSRAYGGSRCAGCVRQRIVRAFLIEEQKIVKKVLLEKLSKK 114          
BLAST of EWM29610.1 vs. NCBI_GenBank
Match: gi|1173936022|gb|OQR87055.1| (ribosomal protein L34 [Achlya hypogyna])

HSP 1 Score: 157.918 bits (398), Expect = 7.810e-48
Identity = 79/114 (69.30%), Postives = 91/114 (79.82%), Query Frame = 0
Query:    1 MGKDTRVTYQRRHAYATRSNGRVIVKTPGGRLTLHQIKKKTRGPHCGDCKIALPGIKHLKTKEYKNLHKRERTVSRAYGGSRCASCVRSRIVRAFLIEEQKIVKRVLNEKKSKK 114
            M K+ R+TY+RRH+YAT+SN  V VKTPGG+L  H  K  + GP CGDCK +L GIKHL +K YKN+ K +RTVSRAYGGSRCA CVR RIVRAFLIEEQKIVK+VL EK SKK
Sbjct:    1 MVKNVRITYRRRHSYATKSNRIVAVKTPGGKLVAHYRKNTSTGPKCGDCKQSLKGIKHLASKAYKNVSKSQRTVSRAYGGSRCAGCVRQRIVRAFLIEEQKIVKKVLLEKLSKK 114          
BLAST of EWM29610.1 vs. NCBI_GenBank
Match: gi|695385813|ref|XP_009518381.1| (hypothetical protein PHYSODRAFT_310652 [Phytophthora sojae] >gi|348683278|gb|EGZ23093.1| hypothetical protein PHYSODRAFT_310652 [Phytophthora sojae])

HSP 1 Score: 157.147 bits (396), Expect = 1.515e-47
Identity = 78/110 (70.91%), Postives = 89/110 (80.91%), Query Frame = 0
Query:    1 MGKDTRVTYQRRHAYATRSNGRVIVKTPGGRLTLHQIKKKTRGPHCGDCKIALPGIKHLKTKEYKNLHKRERTVSRAYGGSRCASCVRSRIVRAFLIEEQKIVKRVLNEK 110
            M K+ R+TY+RRH+YATRSNG   VKTPGG+L     KK+  GP CGDCK +L GIKHL++KEYKN+ K  RTVSRAYGGSRCA CVR RIVRAFLIEEQKIVK+VL EK
Sbjct:    1 MVKNVRITYRRRHSYATRSNGIKAVKTPGGKLVAQYRKKRAAGPKCGDCKQSLKGIKHLQSKEYKNVSKTHRTVSRAYGGSRCAICVRQRIVRAFLIEEQKIVKKVLMEK 110          
BLAST of EWM29610.1 vs. NCBI_GenBank
Match: gi|1173952670|gb|OQS00295.1| (ribosomal protein L34 [Thraustotheca clavata])

HSP 1 Score: 156.377 bits (394), Expect = 3.176e-47
Identity = 79/114 (69.30%), Postives = 89/114 (78.07%), Query Frame = 0
Query:    1 MGKDTRVTYQRRHAYATRSNGRVIVKTPGGRLTLHQIKKKTRGPHCGDCKIALPGIKHLKTKEYKNLHKRERTVSRAYGGSRCASCVRSRIVRAFLIEEQKIVKRVLNEKKSKK 114
            M K+ R+TY+RRH+YAT+SN  V VKTPGG+L     KK   GP CGDCK AL GIKHL  K YK + K +RTVSRAYGGSRCA+CVR RIVRAFLIEEQKIVK+VL EK SKK
Sbjct:    1 MVKNVRITYRRRHSYATKSNRIVAVKTPGGKLVAQYRKKSVSGPKCGDCKQALKGIKHLSVKAYKTVSKSQRTVSRAYGGSRCANCVRQRIVRAFLIEEQKIVKKVLLEKLSKK 114          
BLAST of EWM29610.1 vs. NCBI_GenBank
Match: gi|675192357|ref|XP_008905063.1| (hypothetical protein PPTG_11487 [Phytophthora parasitica INRA-310] >gi|566024603|gb|ETI47514.1| hypothetical protein F443_08294 [Phytophthora parasitica P1569] >gi|567961918|gb|ETK87453.1| hypothetical protein L915_08125 [Phytophthora parasitica] >gi|567990652|gb|ETL40877.1| hypothetical protein L916_08047 [Phytophthora parasitica] >gi|568019896|gb|ETL94036.1| hypothetical protein L917_07941 [Phytophthora parasitica] >gi|568050326|gb|ETM47272.1| hypothetical protein L914_08007 [Phytophthora parasitica] >gi|568095147|gb|ETN09917.1| hypothetical protein PPTG_11487 [Phytophthora parasitica INRA-310] >gi|570328287|gb|ETO76235.1| hypothetical protein F444_08357 [Phytophthora parasitica P1976] >gi|570952052|gb|ETP17309.1| hypothetical protein F441_08276 [Phytophthora parasitica CJ01A1] >gi|570986307|gb|ETP45360.1| hypothetical protein F442_08239 [Phytophthora parasitica P10297] >gi|970662517|gb|KUF99899.1| ADP-ribosylation factor protein 2-binding protein [Phytophthora nicotianae] >gi|970663595|gb|KUG00725.1| 60S ribosomal protein L34-B [Phytophthora nicotianae])

HSP 1 Score: 155.606 bits (392), Expect = 7.506e-47
Identity = 76/110 (69.09%), Postives = 88/110 (80.00%), Query Frame = 0
Query:    1 MGKDTRVTYQRRHAYATRSNGRVIVKTPGGRLTLHQIKKKTRGPHCGDCKIALPGIKHLKTKEYKNLHKRERTVSRAYGGSRCASCVRSRIVRAFLIEEQKIVKRVLNEK 110
            M K+ R+TY+RRH+YAT+SN    VKTPGG+L     KK+  GP CGDCK  L GIKHL++KEYKN+ K +RTVSRAYGGSRCA CVR RIVRAFLIEEQKIVK+VL EK
Sbjct:    1 MVKNVRITYRRRHSYATKSNAIKAVKTPGGKLVAQYRKKRAAGPKCGDCKQTLKGIKHLQSKEYKNVSKTQRTVSRAYGGSRCALCVRQRIVRAFLIEEQKIVKKVLMEK 110          
BLAST of EWM29610.1 vs. NCBI_GenBank
Match: gi|301098543|ref|XP_002898364.1| (ribosomal protein L34 [Phytophthora infestans T30-4] >gi|262105135|gb|EEY63187.1| ribosomal protein L34 [Phytophthora infestans T30-4])

HSP 1 Score: 155.221 bits (391), Expect = 7.843e-47
Identity = 76/110 (69.09%), Postives = 88/110 (80.00%), Query Frame = 0
Query:    1 MGKDTRVTYQRRHAYATRSNGRVIVKTPGGRLTLHQIKKKTRGPHCGDCKIALPGIKHLKTKEYKNLHKRERTVSRAYGGSRCASCVRSRIVRAFLIEEQKIVKRVLNEK 110
            M K+ R+TY+RRH+YAT+SN    VKTPGG+L    IKK+  GP CGDCK  L GIKHL++KE KN+ K +RTVSRAYGGSRCA CVR RIVRAFLIEEQKIVK+VL EK
Sbjct:    1 MVKNVRITYRRRHSYATKSNAIKAVKTPGGKLVAQYIKKRAAGPKCGDCKQTLKGIKHLQSKENKNVSKTQRTVSRAYGGSRCALCVRQRIVRAFLIEEQKIVKKVLMEK 110          
The following BLAST results are available for this feature:
BLAST of EWM29610.1 vs. NCBI_GenBank
Analysis Date: 2020-04-07 (BLAST analysis for N. gaditana B-31)
Total hits: 10
Match NameE-valueIdentityDescription
gi|553180526|ref|XP_005853417.1|1.683e-76100.00large subunit ribosomal protein L34e [Nannochlorop... [more]
gi|676390815|ref|XP_009038685.1|3.273e-4971.17hypothetical protein AURANDRAFT_29090 [Aureococcus... [more]
gi|673038080|ref|XP_008873001.1|5.042e-4970.18hypothetical protein H310_08870 [Aphanomyces invad... [more]
gi|66270183|gb|AAY43421.1|3.092e-4870.00ribosomal protein L34 [Phytophthora infestans][more]
gi|669141898|ref|XP_008606511.1|6.070e-4870.1850S ribosomal protein L34e [Saprolegnia diclina VS... [more]
gi|1173936022|gb|OQR87055.1|7.810e-4869.30ribosomal protein L34 [Achlya hypogyna][more]
gi|695385813|ref|XP_009518381.1|1.515e-4770.91hypothetical protein PHYSODRAFT_310652 [Phytophtho... [more]
gi|1173952670|gb|OQS00295.1|3.176e-4769.30ribosomal protein L34 [Thraustotheca clavata][more]
gi|675192357|ref|XP_008905063.1|7.506e-4769.09hypothetical protein PPTG_11487 [Phytophthora para... [more]
gi|301098543|ref|XP_002898364.1|7.843e-4769.09ribosomal protein L34 [Phytophthora infestans T30-... [more]
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Relationships

This CDS is a part of the following mRNA feature(s):

Feature NameUnique NameSpeciesType
rna1162rna1162Nannochloropsis gaditana (N. gaditana B-31)mRNA


Sequences
Synonyms
Publications