rna1155, rna1155 (mRNA) Nannochloropsis gaditana | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	rna1155
Unique Name	rna1155
Type	mRNA
Organism	Nannochloropsis gaditana (N. gaditana B-31)
Sequence length	4877
Alignment location	CM002456.1:1333034..1334802 +

Link to JBrowse

Properties


Property Name	Value
Product	nuclease
Orig transcript id	gnl\|cribi\|Naga_100006g13.8653.mrna
Orig protein id	gnl\|cribi\|Naga_100006g13.8653
Gbkey	mRNA

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
CM002456.1	supercontig	CM002456.1:1333034..1334802 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. gaditana B-31	2014-02-18

Annotated Terms

Homology

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
Naga_100006g13	gene1112	Nannochloropsis gaditana (N. gaditana B-31)	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
rna1155	rna1155-protein	Nannochloropsis gaditana (N. gaditana B-31)	polypeptide

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
EWM29564.1	cds1154	Nannochloropsis gaditana (N. gaditana B-31)	CDS

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at CM002456.1:1333034..1334802+
coding sequence from alignment at CM002456.1:1333034..1334802+

mRNA sequence

>rna1155 ID=rna1155|Name=rna1155|organism=Nannochloropsis gaditana|type=mRNA|length=4877bp
TAATCAGGGACCGGGTGTTAGCATGCCACGGATCGAGGTGGAGAATGTCC
CCGTGGATTTTCCATTTCAGCCTTATCTGGCCCAAGTCACGTACATGGAA
AAAGTGGTGGCGGCCTTGAAGGATCGTACGAACGCCTTGCTAGAGTCACC
CACCGGCACCGGCAAGACCTTGTCACTTCTTTGTTCGACACTAGCCTGGC
AGCAAACTTACAGCCCTGAACGAGACGGTGCCAGCTCTTGCTGCGGGAAC
GGTGGCACGGGCATCAGCAATGGTAGCATGACATTGATGTACGAAACAGA
CGCTGGAACACCTCGTTCTTTTCCGCCTACAAGTGGCGCGGGTATTAACA
ATCATGTCAAAGGTGTGCAAGGCAAACCTGTGATCGTGTATGCGTCAAGG
ACCCATTCGCAATTGAGACAAGTTATTCGCGAATTGAAAGCTACAGGTTA
CCGACCCCACACCGTTATTTTGGGATCAAGGGAGCAGCTCTGCGTGCATC
CGGAAGTAAGCAAATTAAAAGGCGGCTTACAGAACCGCCGGTGTGGTGTG
TTGACACAAAGCAGGGCGTGTCGGTACAAAAATAATCTGGACTCTTATCA
AGCGGAGCACGTAGGGGGTGGTAGTCCCGGAGTGATGGATATAGAGGAAC
TGAAAAGTCTGGGGCAGACGAAGCTGGTGTGCCCTTACTACCTGATGCGG
CAAAACACGCTCCACGCAGACTTAGTGCTCATGCCGTACAATTACCTGCT
AGACGCAGGCTCTCGGCAACCTTACCAAGTGCGCTGGACAAATTCCGTGG
TCATATTTGACGAAGCCCACAATCTGGAAGGGGTCGCGTCAGAGGCCTGG
TCGTTGGCATTGTCCACCACGATGACGGCACGCATCTCGGAGGAGCTTGA
AAAGGCCTGGGAGATCGTGAAAGTGAAGGGCGAGGGAGTCGTCTCCAAAG
GAGGGGAAAAAGGAGGAGGGAAAGCTGGAGGGGCCGCGTATGGGACCCCA
GCGCCGACCAAGGAGGATCTGGTGTGGCTCAAGCGAGCGTTTCGAGCATT
AGAAGAAGGCATAGACGCGATCCAGCTCACTGTAACCGGCGGGTACAAGC
CCCCGTCCTTCTCCAGCTCGCATGTGCCAGCGAAGAGTGCGGTGTTAGGA
CCACAAAAGCTACAGGATCTTTTCTATGGGGCTGGGCTCGGAGGACTGCA
GCCAGTGGATTTTCACGCGGTTGTGTCTCGGTTGGAGCGTACGATTAATT
TCTTGATGGACGATGCCATCGTAGGGGGGGGAAACGAGGGGGGAATGGGA
ATCGTCTCGACACTATTCACGGGAGGAGCGCTAGAGGCATTTTTGAAGGC
GTACAAAATGATCTATTTCTGGGGGGACACGCTGACCATGCGGAAGAACA
TGCAAGCCTACCGCCTTTACATCGAGAGTGGGGGGCCATCCCTAAGTCTC
ACGACAGGAGCCGGGCAACGGCCCTTGGGAACAGGGGGAAGGGGGCAAGG
CAGCGGAGGAAACAGGCGTAGTTCTTTCCCTCCGGTGGCTCAGGATCCCC
CCAGGCGGGTCCTCCATTATTGGTGTTTCTGTCCAGGAATTGCACTGGAG
CAACTTTTGCAACTCTCGGTCCGCTCTGTCCTCTTGACAAGCGGGACGCT
GTCGCCCCTCGACTCATTTGCCAGCGAGCTCCGGATTCCATTTCCTGTGC
GCTTGGAGAACCAGCATGTCATCGACACCTCCGTGCAAACCTTCATGTCC
ATCCTGTCCCGCGGACCACGCGGGGAGACGTTGTCCTCATCTTTTCAACG
GAGAGGGGAAGACGGCTACCTGGCTGATTTGGGGGAAAGCCTAATCCGAG
TAGCCCGGGGAGTGCCCGGGGGTATGTTGGTATTCTTTCCTTCCTATGGA
GTAATGGACCTGTGCCTGCGACAATGGAAAAAAGGGGAAGGGAAGGGGGC
TGGAGGAGGGGTCTACGAACGACTGCAGCGCGTCAAGACAGTTGTCGAGG
AACCACGGAAAGCAGCAGAGCTGCCTGCGTGCATCCTGGCCTATGACGGG
GCGATCAAAGAGGAGGGAGGCGCTATCTTGCTTGCTGTCTGCCGGGGGAA
GGTGAGCGAAGGTATGGATTTTGCCGATCAACGTGCCCGCGCCGTGGTTA
TCACAGGGATCCCTTTCCCACCTGCCCGAGATCCGCGGGTAGGATTGAAA
AAAATGTACCTGGATTCGCTCGCCTCGTCCCCTGCCTCCGTCCCTTCTTC
CATTCAACCATTGAGAGGCATGGAATGGTACCAACAGCAAGCAGCCCGGG
CAGTCAATCAGGCTGTGGGTCGGGTCATCCGTCATCAAAACGACTACGGC
ATTGTCCTTTTCCTGGACGAACGCTTTGCTGCGCCCGCCCAGCGTGCATC
CTTGAGTCAATGGGTACGCCCTCACGTGAGCACGGCGACAAATTTCGAAG
AAGCCATGGAGGGAATCAGGAAATTCTTCGTACGGGTGAAGGGTATCTCG
AGGTTGGTTCCAAGAAGAAGGGTTGGGGCGGGGGCAAGGGCGTCGGGGAC
ACGAGGGGGGAAAGAGGGCGACGAGGATGAATTTGACGAAGAGTGGGAGG
AAGAGGAGGACGGCAAATGGAATGCGATGGAGAGTGTTCAAGTCAGCGGA
AGGAACAGAAAGGGGGCAGGATTTCGAGCAAGAAACCGAGGAGCAGTTGT
CGTGAACGTGACGAAAGTGGACGTGGATGCTGGCTACATCGCCCCTGAGG
CCATTGAGCAAGAACTTCTCCCTTCGAGCCAAGCAGGAATTGGAGGGAAG
AAAGTGGCGCTTCAAAGGTTCTTGGAATTCAAAAGCGCGCTCAAACAGCA
GGAACGTGTCACCCAGGTGATGGAGGGAAAGCCACTGGGTCCTCGACCGT
CGACGCTGTCCCTGTTGCTCGCGCGGAAGGAAGCAGTGCTCTCAAAAGAT
AGTGGAAGCACAGGAGCGGTCAGTGATCGTGAAAGCCTTCGGGAGGCTAG
CGACTGTGAGGTCCGTTCCCCCCGCAAAATTGCAACGTCGGCAAAATGTG
GCACAAGCCTGCGTGAGACGAAGCGAGAGACTGTCGGGATACCCGGAAAG
GAGTCTCTGATGCGCCAAGCGAGCCTCTCCGAACAACTTGGACTCACGCG
GTCAGTATCCGCGTCAGACTCCTCTACCTCGTCGCGTCCCTCTTCTTTCC
AGGACTCAACCAATTTTATCCCGGGTGTCCGCGTTTGTGGGATTGCTTCT
GGCGGAAGCAATGGAGATGGCGAAAAGGCTGCCGATAAATTGATGATTGG
AAAGCAGCAGCGTTCCTCTTTCTCCTTCCCAAGCTCCGTGTCCCCCTCTT
CCGTGTGCTTTGTTCCTCCATCCCTTACCCGTCCCCGAAAGGCTTCGGCT
CTGAACTCGAGTATTTCCGCAGTCATGGTCGATTTACGGCGTGATGAACA
GGGTGTTGACGGCCCGAAGGAGGATGGAGCGGAGGACGGAGGGGACAACA
ACACCGCTCGGGGCAGACAAGGAGAGATCTTACTCCAGAAAACAGGACCA
CCATCAGCTGTGCGATCACACATACAAATACCATCACATCAATCGCCAGG
CCCACAGGGGAATCGTACACTTCTAAAAAATGCGGAAAATTGTAGCGGGT
GCTCGACAGAAGAACTTGTTGCCATACCACCCAGCGTTTCCACATGTTCT
TCACACGGTCTCCACAATATGGGGGAACGAGCAGTCCAAAGCAAAAGCAA
AGGAGATAAGGTTGAGATTGTAGACGGTGCCACGAAACAGAACGGATTTA
GGAAAAAGGAGGAACGTCCAGGGAAATCGGGAGGAGAACAGAAAGCTGAG
CTTGATTTTGTCGAAATGCAGGAATGGCTTGAGGGTGCGAAAGCGAAACT
CTCGCCTGACCGCTTGCTGATTCTCCAGGATCGGGTCAAGGAAGTCTTAA
AAGGGAAAGTCCAGTCTCTGAAAGATTTTCAAGCCTGGACCTCGGCGGCA
AAAGGTGGAGCTGTCGACGTCCTCCTTTCCACGGGCGCTGATCCCACTTT
TTTGTCCCGATTTGCGCAATCTTACTTATCGTCCTTTTTGCGACCTGTAT
TCGATGGTATGGTAAAAACGAGGTACAAACCTTACTCACGGACTCCTCTG
GCGAGGATAGGAGCGAGAAGCGCATCCGTGACAGGGATGGTGGCCACCAT
AGAGCAGGATCCGAATTCATCGGGAAAAACGAACGTTTTTATCGCCCCCG
GGGGAGAAGAGGAATACCTGGTATGTCGACCAGCCAAAAAGGTCAAGGAG
ACCAACAACATAAAATGGGAAGGAGAAAACACATATGACAAAAAGAGTAT
TATCACACAAAATGGGGTTGAGATAGGAAGTAGAGACGAAGAAGTGATTG
AGCGCCTGCAGCACCTAGTCGATCAGGGCCTGGGAGGCTCTAGGTCAGGT
AGCAAGAAAATGAAAGCAAAAGAGGAAAATGGTAGTCACGGCAATCGTCA
GCAGAAATGCCCGATTTGCGACGAGACTTCCTGTGTATTTGTATCACAAT
GTGGGCATACAGCGTGCATGCCTTGCTGGAAACGATGGCTGAACAAGAAG
GGGCGTGAAGAAAAAGGCGCCAAAGTCGGCCTGTGTTTCTACAAGTGTGG
TCCCGTGACCATTTCATCCCTGAGGCGTGTTCTGGCAGGGCCTGTCAAAG
ACGCAGCCTTATGAATAGTTAGAGCTGACAAGCATTGATTTATATTTATT
CCTGTGCCGTTACATAGAGAAACGAAAAATTCTAGGCAAAGTGCAAATAA
TGAACAGAGATATCGGTCACAATAATTTGCAAAAAGCATGAAAGTAAGAC
AGTTATTGCGTCATATGTGGAAAGATC

protein sequence of rna1155

>rna1155-protein ID=rna1155-protein|Name=rna1155|organism=Nannochloropsis gaditana|type=polypeptide|length=417bp
MLKAKKEFWKSGVRAGRPKNADEKLREHNTAIRGKFCARGAVSQIEARES
HQDRRKRSHKTKGSSSDPLTSIHPPSYSASPCSPSAQTSPPALSYFSSLF
PPFFPSHGNRGSIAHVDTTTTRSGQKWALGMILLTLLPRVARKTLLSIAS
SIPKMQQPSVRAFREGPAKSVNFNSMGARWRRFLQGTKAKAAMAAAVASL
ALGVSLSPPGTFQRYHTVGEIPGRVFRAQTVLVGKVVRVMDGDTLRIRHT
PLFPLLNNHPGSGRLSEETLIIRLAGIDAPELGKGKKQGQAGAEEAKSFV
TKKVLDQSVRIKLLGRDQYARAIASVAYGPVASIPFPLPSFLKKDLSTDL
VKEGFAVIYRQKGAHYDGKLGTLERYEAWAKAKRKGVWHGRDVELPHQFK
ARMKKAAAEKTLAPKGG

mRNA from alignment at CM002456.1:1333034..1334802+

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>rna1155 ID=rna1155|Name=rna1155|organism=Nannochloropsis gaditana|type=mRNA|length=1769bp|location=Sequence derived from alignment at CM002456.1:1333034..1334802+ (Nannochloropsis gaditana)
agaccGTGTTGGAAGTTTGCTTCGCCAGGCAAAGATAATATAAGTGTCGG
ATTCTACGAAAGAGACAGGCTGGCATGTTCCTTCTCTCGACGCCTCAACT
CACTCCTCCTCTAATTTTAAACATATTATACTTTCCCTTTTGGTTCGCAG
CGTGCGAAAATTTCAATTATCACATGTATCTATATTAATTCACTATCTCT
CTGTGGCCATTTCAATAGGTTTCGCCGCGATAGACAATTTCCAGTGCTTC
AATCAGCTAACATACTTTACTCGGCTAATTATTCGCGAGGGGACTTGTCT
ACATGctaaaagcaaaaaaagagtTTTGGAAGAGCGGTGTGCGTGCTGGA
CGACCAAAAAATGCAGACGAAAAATTAAGGGAACACAATACGGCTATACG
CGGGAAATTTTGTGCCAGGGGCGCTGTTTCGCAAATTGAAGCCCGCGAGT
CTCACCAGgacagaagaaaaagaagccatAAAACAAAAGGAAGCAGCTCT
GATCCTCTTACCTCCATCCACCCTCCGTCATACTCAGCGTCACCTTGCAG
TCCTTCTGCACAAACCTCACCGCCGGCTCTGTCctatttttcttcccttt
tcccgccattcTTTCCCAGCCATGGCAACAGAGGTAGCATCGCGCATGTC
GACACCACAACCACTAGAAGTGGACAAAAATGGGCCCTTGGAATGATACT
CctaaccctccttcctcgcgtaGCCAGAAAAACTCTCCTTAGTATTGCCA
GCAGCATCCCGAAAATGCAGCAGCCTTCCGTTCGAGCTTTCCGTGAAGGA
CCTGCCAAAAGCGTAAACTTCAACTCTATGGGGGCCCGTTGGCGTCGATT
CCTGCAGGGGACTAAAgccaaggccgccatggcggccGCTGTGGCATCGT
TGGCACTCGGCGTGTCTTTGAGCCCCCCCGGGACTTTCCAAAGGTATCAC
ACCGTCGGTGAGATCCCGGGAAGAGTGTTTCGGGCACAGACCGTCCTGGT
CGGCAAGGTGGTGCGCGTCATGGACGGTGACACCCTCCGTATCAGGCACA
CCCCTTTATTCCCCCTCCTGAACAACCATCCAGGCTCGGGGCGGCTGTCC
GAAGAGACCTTGATCATCCGCTTGGCGGGCATCGACGCGCCTGAACtcgg
gaaagggaagaaacagGGACAAGCGGGCGCCGAGGAAGCCAAGAGTTTCG
TGACGAAAAAGGTGCTGGATCAAAGCGTCCGTATTAAACTCCTAGGCCGT
GACCAGTACGCGCGTGCCATCGCCTCCGTTGCTTACGGCCCTgttgcctc
catccctttcccgttGCCGTCGTTTTTAAAGAAAGATCTCTCCACCGACT
TGGTAAAAGAAGGATTTGCCGTCATTTATCGACAGAAAGGAGCCCATTAC
GACGGGAAATTGGGGACGTTGGAAAGGTACGAAGCCTGGGCGaaagcgaa
gaggaaaggcgtCTGGCATGGGAGGGATGTGGAGCTTCCGCACCAGTTCA
AAGCGCGGAtgaaaaaggcggcggccgagaagACCTTGGCTCccaaggga
gggtgaggcaccagagaaagaagaaaagaggacgatggaaggcgaaggga
tgcctggtggaggccacGTTACATATGGGCCTACATGGCTTCATCGTGGC
GATTGGAGATGTCATCAATTGACCCCTTTTTGTGTCATCAATTGACCGCT
TTCTGAGCAAAAAAACTGTAAACAAGGATAATCAATgcctccttgcttcc
ctcttctgtGCATGCTTCC

Coding sequence (CDS) from alignment at CM002456.1:1333034..1334802+

>rna1155 ID=rna1155|Name=rna1155|organism=Nannochloropsis gaditana|type=CDS|length=1254bp|location=Sequence derived from alignment at CM002456.1:1333034..1334802+ (Nannochloropsis gaditana)
ATGctaaaagcaaaaaaagagtTTTGGAAGAGCGGTGTGCGTGCTGGACG
ACCAAAAAATGCAGACGAAAAATTAAGGGAACACAATACGGCTATACGCG
GGAAATTTTGTGCCAGGGGCGCTGTTTCGCAAATTGAAGCCCGCGAGTCT
CACCAGgacagaagaaaaagaagccatAAAACAAAAGGAAGCAGCTCTGA
TCCTCTTACCTCCATCCACCCTCCGTCATACTCAGCGTCACCTTGCAGTC
CTTCTGCACAAACCTCACCGCCGGCTCTGTCctatttttcttcccttttc
ccgccattcTTTCCCAGCCATGGCAACAGAGGTAGCATCGCGCATGTCGA
CACCACAACCACTAGAAGTGGACAAAAATGGGCCCTTGGAATGATACTCc
taaccctccttcctcgcgtaGCCAGAAAAACTCTCCTTAGTATTGCCAGC
AGCATCCCGAAAATGCAGCAGCCTTCCGTTCGAGCTTTCCGTGAAGGACC
TGCCAAAAGCGTAAACTTCAACTCTATGGGGGCCCGTTGGCGTCGATTCC
TGCAGGGGACTAAAgccaaggccgccatggcggccGCTGTGGCATCGTTG
GCACTCGGCGTGTCTTTGAGCCCCCCCGGGACTTTCCAAAGGTATCACAC
CGTCGGTGAGATCCCGGGAAGAGTGTTTCGGGCACAGACCGTCCTGGTCG
GCAAGGTGGTGCGCGTCATGGACGGTGACACCCTCCGTATCAGGCACACC
CCTTTATTCCCCCTCCTGAACAACCATCCAGGCTCGGGGCGGCTGTCCGA
AGAGACCTTGATCATCCGCTTGGCGGGCATCGACGCGCCTGAACtcggga
aagggaagaaacagGGACAAGCGGGCGCCGAGGAAGCCAAGAGTTTCGTG
ACGAAAAAGGTGCTGGATCAAAGCGTCCGTATTAAACTCCTAGGCCGTGA
CCAGTACGCGCGTGCCATCGCCTCCGTTGCTTACGGCCCTgttgcctcca
tccctttcccgttGCCGTCGTTTTTAAAGAAAGATCTCTCCACCGACTTG
GTAAAAGAAGGATTTGCCGTCATTTATCGACAGAAAGGAGCCCATTACGA
CGGGAAATTGGGGACGTTGGAAAGGTACGAAGCCTGGGCGaaagcgaaga
ggaaaggcgtCTGGCATGGGAGGGATGTGGAGCTTCCGCACCAGTTCAAA
GCGCGGAtgaaaaaggcggcggccgagaagACCTTGGCTCccaagggagg
gtga

Synonyms

Publications