EWM29564.1, cds1154 (CDS) Nannochloropsis gaditana

Overview
NameEWM29564.1
Unique Namecds1154
TypeCDS
OrganismNannochloropsis gaditana (N. gaditana B-31)
Alignment locationCM002456.1:1333336..1334589 +

Link to JBrowse

Properties
Property NameValue
Protein idEWM29564.1
Productnuclease
Orig transcript idgnl|cribi|Naga_100006g13.8653.mrna
GbkeyCDS
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
CM002456.1supercontigCM002456.1:1333336..1334589 +
Analyses
This CDS is derived from or has results from the following analyses
Analysis NameDate Performed
GO annotation for N. gaditana B312020-04-08
BLAST analysis for N. gaditana B-312020-04-07
InterPro analysis for N. gaditana B-312020-04-06
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
The following terms have been associated with this CDS:
Vocabulary: Cellular Component
TermDefinition
GO:0005575cellular_component
Vocabulary: Molecular Function
TermDefinition
GO:0005488binding
Vocabulary: INTERPRO
TermDefinition
IPR016071Staphylococal_nuclease_OB-fold
Homology
BLAST of EWM29564.1 vs. NCBI_GenBank
Match: gi|585112135|gb|EWM29564.1| (nuclease [Nannochloropsis gaditana])

HSP 1 Score: 850.121 bits (2195), Expect = 0.000e+0
Identity = 417/417 (100.00%), Postives = 417/417 (100.00%), Query Frame = 0
Query:    1 MLKAKKEFWKSGVRAGRPKNADEKLREHNTAIRGKFCARGAVSQIEARESHQDRRKRSHKTKGSSSDPLTSIHPPSYSASPCSPSAQTSPPALSYFSSLFPPFFPSHGNRGSIAHVDTTTTRSGQKWALGMILLTLLPRVARKTLLSIASSIPKMQQPSVRAFREGPAKSVNFNSMGARWRRFLQGTKAKAAMAAAVASLALGVSLSPPGTFQRYHTVGEIPGRVFRAQTVLVGKVVRVMDGDTLRIRHTPLFPLLNNHPGSGRLSEETLIIRLAGIDAPELGKGKKQGQAGAEEAKSFVTKKVLDQSVRIKLLGRDQYARAIASVAYGPVASIPFPLPSFLKKDLSTDLVKEGFAVIYRQKGAHYDGKLGTLERYEAWAKAKRKGVWHGRDVELPHQFKARMKKAAAEKTLAPKGG 417
            MLKAKKEFWKSGVRAGRPKNADEKLREHNTAIRGKFCARGAVSQIEARESHQDRRKRSHKTKGSSSDPLTSIHPPSYSASPCSPSAQTSPPALSYFSSLFPPFFPSHGNRGSIAHVDTTTTRSGQKWALGMILLTLLPRVARKTLLSIASSIPKMQQPSVRAFREGPAKSVNFNSMGARWRRFLQGTKAKAAMAAAVASLALGVSLSPPGTFQRYHTVGEIPGRVFRAQTVLVGKVVRVMDGDTLRIRHTPLFPLLNNHPGSGRLSEETLIIRLAGIDAPELGKGKKQGQAGAEEAKSFVTKKVLDQSVRIKLLGRDQYARAIASVAYGPVASIPFPLPSFLKKDLSTDLVKEGFAVIYRQKGAHYDGKLGTLERYEAWAKAKRKGVWHGRDVELPHQFKARMKKAAAEKTLAPKGG
Sbjct:    1 MLKAKKEFWKSGVRAGRPKNADEKLREHNTAIRGKFCARGAVSQIEARESHQDRRKRSHKTKGSSSDPLTSIHPPSYSASPCSPSAQTSPPALSYFSSLFPPFFPSHGNRGSIAHVDTTTTRSGQKWALGMILLTLLPRVARKTLLSIASSIPKMQQPSVRAFREGPAKSVNFNSMGARWRRFLQGTKAKAAMAAAVASLALGVSLSPPGTFQRYHTVGEIPGRVFRAQTVLVGKVVRVMDGDTLRIRHTPLFPLLNNHPGSGRLSEETLIIRLAGIDAPELGKGKKQGQAGAEEAKSFVTKKVLDQSVRIKLLGRDQYARAIASVAYGPVASIPFPLPSFLKKDLSTDLVKEGFAVIYRQKGAHYDGKLGTLERYEAWAKAKRKGVWHGRDVELPHQFKARMKKAAAEKTLAPKGG 417          
BLAST of EWM29564.1 vs. NCBI_GenBank
Match: gi|553193769|ref|XP_005855829.1| (nuclease domain containing protein, partial [Nannochloropsis gaditana CCMP526] >gi|422293230|gb|EKU20530.1| nuclease domain containing protein, partial [Nannochloropsis gaditana CCMP526])

HSP 1 Score: 273.863 bits (699), Expect = 1.300e-88
Identity = 135/135 (100.00%), Postives = 135/135 (100.00%), Query Frame = 0
Query:  283 GKGKKQGQAGAEEAKSFVTKKVLDQSVRIKLLGRDQYARAIASVAYGPVASIPFPLPSFLKKDLSTDLVKEGFAVIYRQKGAHYDGKLGTLERYEAWAKAKRKGVWHGRDVELPHQFKARMKKAAAEKTLAPKGG 417
            GKGKKQGQAGAEEAKSFVTKKVLDQSVRIKLLGRDQYARAIASVAYGPVASIPFPLPSFLKKDLSTDLVKEGFAVIYRQKGAHYDGKLGTLERYEAWAKAKRKGVWHGRDVELPHQFKARMKKAAAEKTLAPKGG
Sbjct:    1 GKGKKQGQAGAEEAKSFVTKKVLDQSVRIKLLGRDQYARAIASVAYGPVASIPFPLPSFLKKDLSTDLVKEGFAVIYRQKGAHYDGKLGTLERYEAWAKAKRKGVWHGRDVELPHQFKARMKKAAAEKTLAPKGG 135          
BLAST of EWM29564.1 vs. NCBI_GenBank
Match: gi|298708921|emb|CBJ30876.1| (conserved unknown protein [Ectocarpus siliculosus])

HSP 1 Score: 155.606 bits (392), Expect = 7.052e-41
Identity = 88/220 (40.00%), Postives = 127/220 (57.73%), Query Frame = 0
Query:  190 KAAMAAAVASLALGVSLSPP--GTFQRYHTVGEIPGRVFRAQTVLVGKVVRVMDGDTLRIRHTPLFPL-LNNHPGSGRL-SEETLIIRLAGIDAPELGKGKKQGQAGAEEAKSFVTKKVLDQSVRIKLLGRDQYARAIASVAYGPVASIPFPLPSFLKKDLSTDLVKEGFAVIYRQKGAHYDGKLGTLERYEAWAKAKRKGVWHGRDVELPHQFKARMKK 405
            +A++A   A +  G  +S P     + Y TV +IP  +F+    L G VV V DGD++R+RH P  PL L N   +G+  SE+TL IRL  +D PE+       Q  + EAK+F  + +  + V+IKLL  DQY RA+  V YG     PF      +KD+S +L+K G  V+YRQ GA YD +  +L  YE  AK++++GVW   + E P Q+KAR+K+
Sbjct:   60 RASIAIFTAGMLFGCCISSPVSANIRLYRTVPDIPKSMFKNHASLNGNVVTVSDGDSIRVRHKPNIPLPLPNRDMTGKKNSEQTLQIRLYAVDCPEVAHFGNPAQPFSAEAKAFTKEALQGKPVKIKLLSMDQYNRAVCRVQYG---KWPF------RKDISAELLKNGLGVVYRQGGAEYDSREESLTEYEKSAKSRKEGVWSRSNGETPAQYKARIKQ 270          
BLAST of EWM29564.1 vs. NCBI_GenBank
Match: gi|669147556|ref|XP_008609340.1| (hypothetical protein SDRG_05404 [Saprolegnia diclina VS20] >gi|530738936|gb|EQC37178.1| hypothetical protein SDRG_05404 [Saprolegnia diclina VS20])

HSP 1 Score: 151.369 bits (381), Expect = 4.577e-40
Identity = 91/209 (43.54%), Postives = 124/209 (59.33%), Query Frame = 0
Query:  199 SLALGVSLSPPGT---FQRYHTVGEIPGRVFRAQTVLVGKVVRVMDGDTLRIRHTPLFPLLNNHPGS--GRLSEETLIIRLAGIDAPELGKGKKQGQAGAEEAKSFVTKKVLDQSVRIKLLGRDQYARAIASVAYGPVASIPFPLPSFLKKDLSTDLVKEGFAVIYRQKGAHYDGKLGTLERYEAWAKAKRKGVWHGRDVELPHQFKAR 402
            ++ LG+ L  P     FQR+ TV +IP   F  +  L GKVV V DGDT+R+RH    P L N  G   G+L+E TL +R+AG+D PE  K  + GQ   EEAK+++  ++ DQ V  KLL +DQY+RA+  V YG  AS     P+    ++S +L+++G+A IYRQ GA Y G L T E  EA A+ KR  +W     E P Q+KAR
Sbjct:   14 AVGLGLGLLIPHLQKPFQRFSTVNDIPKEFFEQERTLRGKVVSVTDGDTIRVRH---MPWLANGDGDFKGKLTETTLQLRVAGVDCPETAKFGRTGQPFGEEAKAWLKGELQDQVVSFKLLMKDQYSRAVCMVYYGSWAS-----PT----NVSEELLRQGYANIYRQSGAVYGGLLETFEALEAEAREKRVHIWSLDKRETPAQYKAR 210          
BLAST of EWM29564.1 vs. NCBI_GenBank
Match: gi|813128551|ref|XP_012197543.1| (hypothetical protein SPRG_03573 [Saprolegnia parasitica CBS 223.65] >gi|641537809|gb|KDO31653.1| hypothetical protein SPRG_03573 [Saprolegnia parasitica CBS 223.65])

HSP 1 Score: 149.443 bits (376), Expect = 2.499e-39
Identity = 90/209 (43.06%), Postives = 123/209 (58.85%), Query Frame = 0
Query:  199 SLALGVSLSPPGT---FQRYHTVGEIPGRVFRAQTVLVGKVVRVMDGDTLRIRHTPLFPLLNNHPGS--GRLSEETLIIRLAGIDAPELGKGKKQGQAGAEEAKSFVTKKVLDQSVRIKLLGRDQYARAIASVAYGPVASIPFPLPSFLKKDLSTDLVKEGFAVIYRQKGAHYDGKLGTLERYEAWAKAKRKGVWHGRDVELPHQFKAR 402
            ++ LG+ L  P     FQR+ TV +IP   F  +  L GKVV V DGDT+R+RH P    L N  G   G+L+E TL +R+AG+D PE  K  + GQ   EEAK+++  ++ DQ V  KLL +DQY+RA+  V YG  A+   P+      ++S +L++ G+A IYRQ GA Y G L T E  EA A+ KR  +W     E P Q+KAR
Sbjct:   14 AVGLGLGLLIPHLQKPFQRFSTVNDIPKEFFEHERTLRGKVVSVTDGDTIRVRHVPW---LANGDGDFKGKLTETTLQLRVAGVDCPETAKFGRTGQPFGEEAKAWLKGELQDQVVSFKLLMKDQYSRAVCLVYYGSWAA---PM------NVSEELLRHGYANIYRQSGAVYGGLLETFEALEAEAREKRVNIWSLDKRETPAQYKAR 210          
BLAST of EWM29564.1 vs. NCBI_GenBank
Match: gi|1210520009|dbj|GAX21153.1| (hypothetical protein FisN_23Hu168 [Fistulifera solaris])

HSP 1 Score: 149.443 bits (376), Expect = 2.361e-38
Identity = 90/208 (43.27%), Postives = 118/208 (56.73%), Query Frame = 0
Query:  206 LSPPGTFQRYHTVGEIPGRVFRAQTVLVGKVVRVMDGDTLRIRHTPLFPLLNN--HPGSGRLSEETLIIRLAGIDAPELGKGKKQ-GQAGAEEAKSFVTKKVLDQSVRIKLLGRDQYARAIASVAYGPVASIPFPLPSFLKKDLSTDLVKEGFAVIYRQKGAHYDGKLGTLERYEAWAKAKRKGVWH-GRDVELPHQFKARMKKAAAE 409
            L P    Q++ TV +IP   F  +  +   V RV DGDT+R+RH P F + N    P  G+LS++T+ +RL G+D PEL K K Q  Q  AEEAK F  K +  Q V +  LG+DQY RAIA V   PV+++   LP    KD S +LV  GFA IYR KGA Y G    LE  +  A+ +++G+W  GR      + K R KK AAE
Sbjct:   83 LGPFSALQQFDTVSDIPAEFFANRRSIYAFVERVTDGDTIRVRHYPGFSIFNQPVEPLKGKLSDKTIKVRLYGVDTPELAKNKNQSSQPFAEEAKEFTKKLLFHQKVVVTFLGKDQYGRAIAQVQTIPVSTLGGTLPP---KDASVELVGAGFAEIYRGKGAEYFGLKDILEDRQTRAQIEKRGIWSLGRAWVSAAEEKKRRKKEAAE 287          
BLAST of EWM29564.1 vs. NCBI_GenBank
Match: gi|1173944722|gb|OQR93424.1| (hypothetical protein ACHHYP_02548 [Achlya hypogyna])

HSP 1 Score: 144.05 bits (362), Expect = 2.835e-37
Identity = 90/216 (41.67%), Postives = 122/216 (56.48%), Query Frame = 0
Query:  195 AAVASLALGVSLSPPGTFQR----YHTVGEIPGRVFRAQTVLVGKVVRVMDGDTLRIRHTPLFPLLNNHPGS--GRLSEETLIIRLAGIDAPELGKGKKQGQAGAEEAKSFVTKKVLDQSVRIKLLGRDQYARAIASVAYGPVASIPFPLPSFLKKDLSTDLVKEGFAVIYRQKGAHYDGKLGTLERYEAWAKAKRKGVWHGRDVELPHQFKARMK 404
            A    LALG+  S    FQR      TV +IP   F  +  L GKVV V DGDT+R+RH    PLL +  G   G+L+E T+ +R+AG+D PE  K  + GQ   EEAK+++  ++ DQ V  KLL +DQY+RA+  V YG  AS          +++S +L+K G+A IYRQ GA Y G L T E  EA A  ++  +W     E P Q+KAR +
Sbjct:   12 AFAVGLALGLGYS---HFQRPFKVLATVNDIPKEYFEQERTLKGKVVAVTDGDTIRVRH---MPLLGSGEGDFKGKLTETTMQLRIAGVDCPETAKFGRPGQPFGEEAKAWLKSQIQDQVVTFKLLMKDQYSRAVCMVYYGSWAS---------PQNVSEELLKLGYANIYRQSGAVYGGLLETFEALEAAACEQKLNIWSQAKRETPAQYKARTR 212          
BLAST of EWM29564.1 vs. NCBI_GenBank
Match: gi|1173949221|gb|OQR97285.1| (hypothetical protein THRCLA_21961 [Thraustotheca clavata])

HSP 1 Score: 142.895 bits (359), Expect = 9.520e-37
Identity = 83/194 (42.78%), Postives = 113/194 (58.25%), Query Frame = 0
Query:  212 FQRYHTVGEIPGRVFRAQTVLVGKVVRVMDGDTLRIRHTPLFPLLNNHPGS--GRLSEETLIIRLAGIDAPELGKGKKQGQAGAEEAKSFVTKKVLDQSVRIKLLGRDQYARAIASVAYGPVASIPFPLPSFLKKDLSTDLVKEGFAVIYRQKGAHYDGKLGTLERYEAWAKAKRKGVWH-GRDVELPHQFKAR 402
            F+R++TV +IP   F  +  + GKV+ V DGDT+R+RH P    L N  G   G+L+E TL IR+AG+DAPE  K  + GQ   E+AK ++  ++ DQ V IKLL +DQY RA+  V YG  AS          K+ S +L+K G+A IYRQ GA Y G L   E  E  A+  +  +W  G   E P ++KAR
Sbjct:   29 FKRFNTVNDIPKEYFDEEQTIRGKVITVTDGDTIRVRHVPW---LANGDGDFKGKLTETTLQIRIAGVDAPETAKFGRTGQPFGEDAKQWLKDELFDQIVSIKLLMKDQYGRAVCMVYYGSWAS---------PKNASEELLKAGYANIYRQSGAVYGGLLDKFEALEDEARKNKVKIWSLGDKRETPAEYKAR 210          
BLAST of EWM29564.1 vs. NCBI_GenBank
Match: gi|1173952780|gb|OQS00371.1| (hypothetical protein THRCLA_05975 [Thraustotheca clavata])

HSP 1 Score: 139.043 bits (349), Expect = 6.019e-35
Identity = 96/256 (37.50%), Postives = 134/256 (52.34%), Query Frame = 0
Query:  155 MQQPSVRAFREGPAKSVN--FNSMGARWRRFLQGTKAKAAMAAAVASLALGVSL-SPPGTFQRYHTVGEIPGRVFRAQTVLVGKVVRVMDGDTLRIRHTPLFPLLNNHPGS--GRLSEETLIIRLAGIDAPELGKGKKQGQAGAEEAKSFVTKKVLDQSVRIKLLGRDQYARAIASVAYGPVASIPFPLPSFLKKDLSTDLVKEGFAVIYRQKGAHYDGKLGTLERYEAWAKAKRKGVW-HGRDVELPHQFKARMK 404
            M   ++R   E   K +N  F  +      FL   K    + A    L LG+++      FQR+ TV EIP  +F+ Q  +  K + V DGDTLR+RH P        PG+  G+LSE T+ IRL  ID PE  K   QGQ   +EAK ++TK + D+ + + LL +DQYARA+  V YG     PF      KKD S +L+K G A +YRQ GA Y GK    ++ E  AK ++  +W  G   E   ++KAR++
Sbjct:    1 MDIETIRKEAEAQWKRINTQFGQLDVGKMAFLH-DKNVQLIGAFTFGLVLGLAIPKVRAPFQRFSTVEEIPNFMFQEQRKIRAKAISVSDGDTLRVRHLPFL----RGPGNMDGKLSETTMQIRLCAIDTPETPKFGNQGQPFGDEAKEYLTKILGDRKLMLTLLQKDQYARAVCLVEYGWG---PF------KKDASEELLKAGLANVYRQTGAVYGGKQSVYDKLEERAKNQKLKMWSQGDKFETTSEYKARIR 242          
BLAST of EWM29564.1 vs. NCBI_GenBank
Match: gi|301110250|ref|XP_002904205.1| (conserved hypothetical protein [Phytophthora infestans T30-4] >gi|262096331|gb|EEY54383.1| conserved hypothetical protein [Phytophthora infestans T30-4])

HSP 1 Score: 135.961 bits (341), Expect = 2.679e-34
Identity = 80/206 (38.83%), Postives = 117/206 (56.80%), Query Frame = 0
Query:  200 LALGVSLSPPGTFQRYHTVGEIPGRVFRAQTVLVGKVVRVMDGDTLRIRHTPLFPLLNNHPGSGRLSEETLIIRLAGIDAPELGKGKKQGQAGAEEAKSFVTKKVLDQSVRIKLLGRDQYARAIASVAYGPVASIPFPLPSFLKKDLSTDLVKEGFAVIYRQKGAHYDGKLGTLERYEAWAKAKRKGVW-HGRDVELPHQFKARMK 404
            L L +S  P   F+R+ TV ++P R+F  +  +    V   DGDTLR+RH PLF    ++   G+LS+ TL IRLAGID PE  K    GQ   +EAK +++  +  + + + LL +DQYARA+  V YG     PF      ++D S +++K G   +YRQ GA Y GK    E  E  +K K++G+W  G+ +E    +KARM+
Sbjct:    7 LRLPLSAGPSQPFRRFSTVEDLPNRLFHQEGKIKAAAVNFSDGDTLRVRHLPLFRGAGSY--DGKLSDHTLQIRLAGIDTPETAKFGNPGQPFGDEAKKWLSSTLEGRKLTLTLLHKDQYARAVCLVQYG---WWPF------RRDASAEILKVGLGQVYRQAGAVYGGKQEIYEMLEEKSKKKKRGIWSQGKKMESSSDYKARMR 201          
The following BLAST results are available for this feature:
BLAST of EWM29564.1 vs. NCBI_GenBank
Analysis Date: 2020-04-07 (BLAST analysis for N. gaditana B-31)
Total hits: 10
Match NameE-valueIdentityDescription
gi|585112135|gb|EWM29564.1|0.000e+0100.00nuclease [Nannochloropsis gaditana][more]
gi|553193769|ref|XP_005855829.1|1.300e-88100.00nuclease domain containing protein, partial [Nanno... [more]
gi|298708921|emb|CBJ30876.1|7.052e-4140.00conserved unknown protein [Ectocarpus siliculosus][more]
gi|669147556|ref|XP_008609340.1|4.577e-4043.54hypothetical protein SDRG_05404 [Saprolegnia dicli... [more]
gi|813128551|ref|XP_012197543.1|2.499e-3943.06hypothetical protein SPRG_03573 [Saprolegnia paras... [more]
gi|1210520009|dbj|GAX21153.1|2.361e-3843.27hypothetical protein FisN_23Hu168 [Fistulifera sol... [more]
gi|1173944722|gb|OQR93424.1|2.835e-3741.67hypothetical protein ACHHYP_02548 [Achlya hypogyna... [more]
gi|1173949221|gb|OQR97285.1|9.520e-3742.78hypothetical protein THRCLA_21961 [Thraustotheca c... [more]
gi|1173952780|gb|OQS00371.1|6.019e-3537.50hypothetical protein THRCLA_05975 [Thraustotheca c... [more]
gi|301110250|ref|XP_002904205.1|2.679e-3438.83conserved hypothetical protein [Phytophthora infes... [more]
back to top
Relationships

This CDS is a part of the following mRNA feature(s):

Feature NameUnique NameSpeciesType
rna1155rna1155Nannochloropsis gaditana (N. gaditana B-31)mRNA


Sequences
Synonyms
Publications