rna1145, rna1145 (mRNA) Nannochloropsis gaditana | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	rna1145
Unique Name	rna1145
Type	mRNA
Organism	Nannochloropsis gaditana (N. gaditana B-31)
Sequence length	330
Alignment location	CM002456.1:1302217..1305534 -

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Properties


Property Name	Value
Product	Zinc finger, CCCH-type protein
Orig transcript id	gnl\|cribi\|Naga_100006g22.8667.mrna
Orig protein id	gnl\|cribi\|Naga_100006g22.8667
Gbkey	mRNA

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
CM002456.1	supercontig	CM002456.1:1302217..1305534 -

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. gaditana B-31	2014-02-18

Annotated Terms

Homology

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
Naga_100006g22	gene1103	Nannochloropsis gaditana (N. gaditana B-31)	gene

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
EWM29578.1	cds1144	Nannochloropsis gaditana (N. gaditana B-31)	CDS

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
rna1145	rna1145-protein	Nannochloropsis gaditana (N. gaditana B-31)	polypeptide

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at CM002456.1:1302217..1305534-
coding sequence from alignment at CM002456.1:1302217..1305534-

mRNA sequence

>rna1145 ID=rna1145|Name=rna1145|organism=Nannochloropsis gaditana|type=mRNA|length=330bp
ATGTCAAATCATCTCGCAATCTCAGGCCTCAAGAAGGAACATCACGAATC
ATCGTACCCACATTTACACATGTCTGATTCAGAACATATGCATGGGCAAA
AGTTAACGTGCAACTTAAATCCCGGTAATGATGTGGTGGCCCGTTTAAGT
ACCAAAAACCAGGCATGGTGCTACATTCTTCGGCGACGCGCAAACTTGAG
CAACGTCCTTCTTAGTTACTTTGTTATCTACAAGAAGTGGTGGCTTTTAA
AGACGAAACGAGCTGAATGTGGACGACGGTGCTCATTTCTCCTCCATGCG
CGTCTGGCATCCGCTTCATGCTGTAAGTAA

protein sequence of rna1145

>rna1145-protein ID=rna1145-protein|Name=rna1145|organism=Nannochloropsis gaditana|type=polypeptide|length=1105bp
MKAAGGFGGRARDVRKEVKHALNQLRWHLCEEIGVPFASIQLYVSSADYH
NGNGVADDMGGGSDESGDTPRWCRQWVREGRCNRKRCRFKHVLTLAPIGA
RPSHKSSASMAPLLLLEGEEVEAVLTAPSNASAGAGSVGGGSGGSISNYT
LVSSSSSTGQGPMLHRAVFLAVAGQRIVWDKERPEVWEAFVGACLQTVKE
IDPCRNHPGITITKDRGHRVLSPIDTLRHGSSEGSLKLSPEQTKVQDFPP
RSYATGNGLLAFLPMGIVRELFVHYLSPSACARCVRVCRDWAIRAGDEDI
WRYFLASTFGITLPRQSTTRTASKTGKEYQHTFPSAADDYALHCHAPPSS
LFTTTEVDAGAFTMRRRHANEALFCDLSTLALEADGEELTACATAEDSFS
RGTVLVTPPPQLAPKERGEIGENLCENEMAMQTGNGDIVCCAHFFHPRLE
YGRWQHVYWNTEALAESAGGTGGNGERKRRERGVFCLSGLPHEEVAIGNR
DAPGLSPLPRPQQLDRLVSKGRSTSSPGASPSPHPRHLVARFHGHDRGMV
LALHVDEEKDRLISGDVSGCVRLWELHSGRKIGTVDLRTNLSCLVADSRT
LYVGTLKGVLYTIDLEDLSDVRAHRLWGEGPASTISSLCLMQQSVIASTH
RFRPEKILRRGESRRFGEKEEHAKSTPTCSFPPRSDHLDSQGTDLIKSPV
LDARSSALPACATQEDRGIEHKSDSILSRDSGLMRKRSNVPSSSAGRKEK
NTASCEISTQEREDIVPRLVIGFGNGSFMLLHGTQRLMSLTLSDTLSAFP
SPSCSSPSSLLHHLYTLPLAEPACVFLLAMGRKSFVAAACPDRLFLWSDE
DEGKREEGREREMNQPKTEMPVVPLRTFVSSPWALQMEASSNVVKTTKGS
DGKGQTESGRVVDGAMMEPKDWHSGDAPCDVVMLAIWPELEERHAIEDDD
QVASPVIIVTGCNHDDLLRWWDLNDAKGGTMEEAVGHPHPATGPQAVCTA
ITPACVSIKRGVMCDVSHQRRSKEELASLGTLCMTQAAGILLSSHLNGSM
VLWHVGQRQRVASFHRLPLFESLLLTTVGLDTVACYEREIVYARRAAAVE
QTPWV

mRNA from alignment at CM002456.1:1302217..1305534-

Legend: CDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

>rna1145 ID=rna1145|Name=rna1145|organism=Nannochloropsis gaditana|type=mRNA|length=3318bp|location=Sequence derived from alignment at CM002456.1:1302217..1305534- (Nannochloropsis gaditana)
ATGAAAGCGGCTGGCGGCTTCGGAGGCCGTGCAAGGGACGTGCGAAAAGA
AGTCAAGCATGCGTTGAACCAATTGCGATGGCACTTGTGTGAGGAGATTG
GTGTACCATTTGCTTCGATACAGTTGTATGTTTCAAGTGCGGACTATCAT
AATGGAAACGGGGTGGCAGATGATATGGGAGGTGGGAGTGATGAATCGGG
AGACACGCCGAGGTGGTGCCGGCAATGGGTGCGAGAAGGTCGTTGTAACC
GGAAACGCTGTCGATTTAAACATGTCCTGACATTGGCTCCAATAGGGGCA
CGACCTTCACACAAATCGTCCGCATCCATGGCCCCTCTGCTGTTGTTGGA
AGGGGAGGAAGTGGAAGCCGTCTTAACTGCTCCCTCGAATGCTAGCGCGG
GGGCTGGCAGTGTAGGAGGAGGCAGCGGAGGCAGCATTAGCAACTACACG
CTCGTCTCTTCATCCTCTTCGACCGGACAAGGGCCGATGTTACATCGGGC
AGTCTTTCTTGCCGTAGCGGGGCAGCGAATTGTGTGGGACAAAGAGCGAC
CAGAGGTCTGGGAGGCCTTCGTGGGAGCTTGTCTGCAGACGGTTAAGGAA
ATAGATCCTTGCAGAAATCACCCTGGCATTACCATAACAAAAGATAGAGG
TCATCGTGTACTGAGCCCTATCGACACGCTCCGTCATGGTTCTTCCGAGG
GAAGCCTGAAGCTTTCCCCTGAGCAAACCAAAGTGCAGGATTTTCCTCCT
CGTAGCTACGCCACAGGAAACGGTTTGCTAGCCTTTTTGCCCATGGGAAT
AGTAAGAGAACTCTTTGTACACTATTTATCTCCTTCTGCCTGTGCCCGCT
GTGTAAGGGTTTGTCGGGATTGGGCGATTCGAGCAGGAGACGAAGACATC
TGGCGTTATTTCCTGGCAAGTACATTCGGTATCACTCTGCCCCGCCAATC
GACGACAAGAACCGCAAGCAAGACCGGAAAAGAATATCAGCACACCTTTC
CGTCTGCTGCAGATGATTATGCCCTCCATTGTCATGCCCCGCCGTCTAGC
TTGTTTACGACGACAGAGGTCGATGCGGGCGCGTTCACAATGAGGCGACG
GCATGCAAACGAGGCTCTTTTTTGTGATTTGAGCACCCTGGCCTTGGAAG
CTGACGGAGAGGAGCTCACGGCCTGTGCCACAGCAGAGGACTCATTTTCT
AGAGGCACCGTCCTGGTCACGCCTCCCCCCCAGCTCGCCCCAAAGGAAAG
AGGGGAAATAGGAGAAAATCTTTGCGAAAACGAGATGGCCATGCAGACAG
GTAATGGCGACATTGTCTGTTGCGCACATTTCTTTCACCCTCGTTTGGAA
TACGGGCGCTGGCAGCATGTCTACTGGAACACTGAGGCTCTGGCAGAGTC
CGCGGGAGGGACAGGGGGCAACGGAGAACGGAAAAGAAGGGAAAGGGGAG
TTTTCTGCCTTAGCGGACTACCACACGAGGAGGTGGCAATTGGTAATAGG
GATGCCCCCGGCTTGTCTCCTTTACCTCGGCCCCAGCAGCTTGACCGTCT
TGTCTCCAAGGGTCGCTCTACTTCCTCTCCTGGTGCGTCGCCCTCGCCGC
ATCCGCGTCACCTGGTGGCCCGCTTTCATGGACACGACCGGGGCATGGTC
CTAGCTTTGCATGTGGATGAAGAAAAGGATCGTTTGATTTCCGGGGATGT
GTCTGGCTGTGTGCGGCTGTGGGAACTGCACTCTGGACGCAAAATTGGAA
CAGTAGATCTGCGGACTAACCTCTCATGCCTGGTAGCCGATTCGCGTACG
CTTTACGTAGGGACCTTGAAAGGGGTTTTGTACACAATAGATTTGGAAGA
CCTGTCGGATGTGCGAGCGCACCGATTGTGGGGTGAGGGGCCGGCCAGCA
CCATTTCTTCCCTCTGTCTTATGCAACAGTCCGTCATTGCGTCGACCCAC
CGCTTCCGCCCCGAGAAAATTCTCCGGCGCGGCGAAAGTAGAAGATTTGG
GGAAAAAGAGGAGCACGCCAAATCGACACCTACTTGTTCTTTTCCCCCTC
GCTCCGACCACTTGGATTCTCAGGGCACGGACTTAATTAAGAGTCCCGTC
CTGGACGCGCGGTCTTCTGCCTTACCGGCTTGCGCGACGCAAGAAGACAG
AGGTATAGAACACAAAAGTGACAGCATACTCAGCCGTGACAGTGGGCTTA
TGCGCAAAAGGAGCAACGTACCAAGTAGCAGTGCGGGTAGGAAGGAGAAA
AATACGGCTTCTTGCGAGATTTCTACACAGGAAAGGGAGGATATTGTGCC
GCGCCTGGTCATCGGCTTTGGTAATGGATCATTCATGCTTTTGCACGGAA
CACAGCGACTCATGTCGCTGACTTTGTCGGATACGCTCTCCGCATTTCCC
TCTCCTTCTTGTTCTTCTCCTTCTTCGCTCCTCCACCACCTGTATACCCT
CCCTCTCGCAGAACCCGCATGCGTCTTTCTGTTGGCGATGGGACGTAAAT
CCTTTGTCGCCGCCGCTTGCCCTGATCGACTCTTCCTATGGTCGGACGAA
GACGAGGGGAAGCGAGAAGAAGGGAGAGAGCGCGAAATGAATCAACCGAA
AACAGAAATGCCAGTAGTCCCTTTGCGGACGTTTGTGTCGAGCCCCTGGG
CCCTCCAAATGGAAGCTTCTAGCAATGTAGTGAAGACAACAAAGGGCTCA
GATGGAAAAGGGCAGACAGAGTCAGGGCGGGTGGTGGATGGAGCAATGAT
GGAGCCAAAGGATTGGCACAGTGGAGACGCGCCGTGCGATGTCGTGATGT
TAGCGATCTGGCCGGAACTTGAGGAGAGGCATGCGATAGAGGACGATGAT
CAGGTAGCGTCACCCGTGATTATTGTGACAGGATGCAATCATGACGACTT
GTTGCGGTGGTGGGATCTGAACGATGCGAAGGGTGGTACAATGGAAGAGG
CAGTTGGCCATCCGCATCCCGCGACAGGCCCGCAGGCCGTTTGCACGGCC
ATTACACCTGCTTGCGTCAGCATCAAAAGAGGGGTTATGTGTGACGTAAG
TCATCAGCGACGGAGCAAGGAAGAGCTGGCAAGTTTGGGAACCTTGTGCA
TGACACAGGCAGCGGGTATCCTCCTTTCGTCCCATCTGAACGGGTCTATG
GTACTATGGCACGTCGGACAGCGACAAAGAGTGGCTTCCTTTCATAGGCT
TCCTCTCTTTGAGTCATTGCTCCTGACAACGGTGGGATTGGATACAGTCG
CATGCTATGAAAGAGAAATTGTTTATGCACGACGCGCGGCTGCTGTGGAA
CAAACGCCTTGGGTTTGA

Coding sequence (CDS) from alignment at CM002456.1:1302217..1305534-

>rna1145 ID=rna1145|Name=rna1145|organism=Nannochloropsis gaditana|type=CDS|length=3318bp|location=Sequence derived from alignment at CM002456.1:1302217..1305534- (Nannochloropsis gaditana)
ATGAAAGCGGCTGGCGGCTTCGGAGGCCGTGCAAGGGACGTGCGAAAAGA
AGTCAAGCATGCGTTGAACCAATTGCGATGGCACTTGTGTGAGGAGATTG
GTGTACCATTTGCTTCGATACAGTTGTATGTTTCAAGTGCGGACTATCAT
AATGGAAACGGGGTGGCAGATGATATGGGAGGTGGGAGTGATGAATCGGG
AGACACGCCGAGGTGGTGCCGGCAATGGGTGCGAGAAGGTCGTTGTAACC
GGAAACGCTGTCGATTTAAACATGTCCTGACATTGGCTCCAATAGGGGCA
CGACCTTCACACAAATCGTCCGCATCCATGGCCCCTCTGCTGTTGTTGGA
AGGGGAGGAAGTGGAAGCCGTCTTAACTGCTCCCTCGAATGCTAGCGCGG
GGGCTGGCAGTGTAGGAGGAGGCAGCGGAGGCAGCATTAGCAACTACACG
CTCGTCTCTTCATCCTCTTCGACCGGACAAGGGCCGATGTTACATCGGGC
AGTCTTTCTTGCCGTAGCGGGGCAGCGAATTGTGTGGGACAAAGAGCGAC
CAGAGGTCTGGGAGGCCTTCGTGGGAGCTTGTCTGCAGACGGTTAAGGAA
ATAGATCCTTGCAGAAATCACCCTGGCATTACCATAACAAAAGATAGAGG
TCATCGTGTACTGAGCCCTATCGACACGCTCCGTCATGGTTCTTCCGAGG
GAAGCCTGAAGCTTTCCCCTGAGCAAACCAAAGTGCAGGATTTTCCTCCT
CGTAGCTACGCCACAGGAAACGGTTTGCTAGCCTTTTTGCCCATGGGAAT
AGTAAGAGAACTCTTTGTACACTATTTATCTCCTTCTGCCTGTGCCCGCT
GTGTAAGGGTTTGTCGGGATTGGGCGATTCGAGCAGGAGACGAAGACATC
TGGCGTTATTTCCTGGCAAGTACATTCGGTATCACTCTGCCCCGCCAATC
GACGACAAGAACCGCAAGCAAGACCGGAAAAGAATATCAGCACACCTTTC
CGTCTGCTGCAGATGATTATGCCCTCCATTGTCATGCCCCGCCGTCTAGC
TTGTTTACGACGACAGAGGTCGATGCGGGCGCGTTCACAATGAGGCGACG
GCATGCAAACGAGGCTCTTTTTTGTGATTTGAGCACCCTGGCCTTGGAAG
CTGACGGAGAGGAGCTCACGGCCTGTGCCACAGCAGAGGACTCATTTTCT
AGAGGCACCGTCCTGGTCACGCCTCCCCCCCAGCTCGCCCCAAAGGAAAG
AGGGGAAATAGGAGAAAATCTTTGCGAAAACGAGATGGCCATGCAGACAG
GTAATGGCGACATTGTCTGTTGCGCACATTTCTTTCACCCTCGTTTGGAA
TACGGGCGCTGGCAGCATGTCTACTGGAACACTGAGGCTCTGGCAGAGTC
CGCGGGAGGGACAGGGGGCAACGGAGAACGGAAAAGAAGGGAAAGGGGAG
TTTTCTGCCTTAGCGGACTACCACACGAGGAGGTGGCAATTGGTAATAGG
GATGCCCCCGGCTTGTCTCCTTTACCTCGGCCCCAGCAGCTTGACCGTCT
TGTCTCCAAGGGTCGCTCTACTTCCTCTCCTGGTGCGTCGCCCTCGCCGC
ATCCGCGTCACCTGGTGGCCCGCTTTCATGGACACGACCGGGGCATGGTC
CTAGCTTTGCATGTGGATGAAGAAAAGGATCGTTTGATTTCCGGGGATGT
GTCTGGCTGTGTGCGGCTGTGGGAACTGCACTCTGGACGCAAAATTGGAA
CAGTAGATCTGCGGACTAACCTCTCATGCCTGGTAGCCGATTCGCGTACG
CTTTACGTAGGGACCTTGAAAGGGGTTTTGTACACAATAGATTTGGAAGA
CCTGTCGGATGTGCGAGCGCACCGATTGTGGGGTGAGGGGCCGGCCAGCA
CCATTTCTTCCCTCTGTCTTATGCAACAGTCCGTCATTGCGTCGACCCAC
CGCTTCCGCCCCGAGAAAATTCTCCGGCGCGGCGAAAGTAGAAGATTTGG
GGAAAAAGAGGAGCACGCCAAATCGACACCTACTTGTTCTTTTCCCCCTC
GCTCCGACCACTTGGATTCTCAGGGCACGGACTTAATTAAGAGTCCCGTC
CTGGACGCGCGGTCTTCTGCCTTACCGGCTTGCGCGACGCAAGAAGACAG
AGGTATAGAACACAAAAGTGACAGCATACTCAGCCGTGACAGTGGGCTTA
TGCGCAAAAGGAGCAACGTACCAAGTAGCAGTGCGGGTAGGAAGGAGAAA
AATACGGCTTCTTGCGAGATTTCTACACAGGAAAGGGAGGATATTGTGCC
GCGCCTGGTCATCGGCTTTGGTAATGGATCATTCATGCTTTTGCACGGAA
CACAGCGACTCATGTCGCTGACTTTGTCGGATACGCTCTCCGCATTTCCC
TCTCCTTCTTGTTCTTCTCCTTCTTCGCTCCTCCACCACCTGTATACCCT
CCCTCTCGCAGAACCCGCATGCGTCTTTCTGTTGGCGATGGGACGTAAAT
CCTTTGTCGCCGCCGCTTGCCCTGATCGACTCTTCCTATGGTCGGACGAA
GACGAGGGGAAGCGAGAAGAAGGGAGAGAGCGCGAAATGAATCAACCGAA
AACAGAAATGCCAGTAGTCCCTTTGCGGACGTTTGTGTCGAGCCCCTGGG
CCCTCCAAATGGAAGCTTCTAGCAATGTAGTGAAGACAACAAAGGGCTCA
GATGGAAAAGGGCAGACAGAGTCAGGGCGGGTGGTGGATGGAGCAATGAT
GGAGCCAAAGGATTGGCACAGTGGAGACGCGCCGTGCGATGTCGTGATGT
TAGCGATCTGGCCGGAACTTGAGGAGAGGCATGCGATAGAGGACGATGAT
CAGGTAGCGTCACCCGTGATTATTGTGACAGGATGCAATCATGACGACTT
GTTGCGGTGGTGGGATCTGAACGATGCGAAGGGTGGTACAATGGAAGAGG
CAGTTGGCCATCCGCATCCCGCGACAGGCCCGCAGGCCGTTTGCACGGCC
ATTACACCTGCTTGCGTCAGCATCAAAAGAGGGGTTATGTGTGACGTAAG
TCATCAGCGACGGAGCAAGGAAGAGCTGGCAAGTTTGGGAACCTTGTGCA
TGACACAGGCAGCGGGTATCCTCCTTTCGTCCCATCTGAACGGGTCTATG
GTACTATGGCACGTCGGACAGCGACAAAGAGTGGCTTCCTTTCATAGGCT
TCCTCTCTTTGAGTCATTGCTCCTGACAACGGTGGGATTGGATACAGTCG
CATGCTATGAAAGAGAAATTGTTTATGCACGACGCGCGGCTGCTGTGGAA
CAAACGCCTTGGGTTTGA

Synonyms

Publications