EWM29578.1, cds1144 (CDS) Nannochloropsis gaditana

Overview
NameEWM29578.1
Unique Namecds1144
TypeCDS
OrganismNannochloropsis gaditana (N. gaditana B-31)
Alignment locationCM002456.1:1302217..1305534 -

Link to JBrowse

Properties
Property NameValue
Protein idEWM29578.1
ProductZinc finger, CCCH-type protein
Orig transcript idgnl|cribi|Naga_100006g22.8667.mrna
GbkeyCDS
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
CM002456.1supercontigCM002456.1:1302217..1305534 -
Analyses
This CDS is derived from or has results from the following analyses
Analysis NameDate Performed
GO annotation for N. gaditana B312020-04-08
BLAST analysis for N. gaditana B-312020-04-07
InterPro analysis for N. gaditana B-312020-04-06
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
The following terms have been associated with this CDS:
Vocabulary: Molecular Function
TermDefinition
GO:0046872metal ion binding
GO:0005515protein binding
Vocabulary: INTERPRO
TermDefinition
IPR001810F-box_dom
IPR017986WD40_repeat_dom
IPR000571Znf_CCCH
IPR015943WD40/YVTN_repeat-like_dom
Homology
[Close]
BLAST of EWM29578.1 vs. NCBI_GenBank
Match: gi|585112149|gb|EWM29578.1| (Zinc finger, CCCH-type protein [Nannochloropsis gaditana])

HSP 1 Score: 2273.43 bits (5890), Expect = 0.000e+0
Identity = 1105/1105 (100.00%), Postives = 1105/1105 (100.00%), Query Frame = 0 
Query:    1 MKAAGGFGGRARDVRKEVKHALNQLRWHLCEEIGVPFASIQLYVSSADYHNGNGVADDMGGGSDESGDTPRWCRQWVREGRCNRKRCRFKHVLTLAPIGARPSHKSSASMAPLLLLEGEEVEAVLTAPSNASAGAGSVGGGSGGSISNYTLVSSSSSTGQGPMLHRAVFLAVAGQRIVWDKERPEVWEAFVGACLQTVKEIDPCRNHPGITITKDRGHRVLSPIDTLRHGSSEGSLKLSPEQTKVQDFPPRSYATGNGLLAFLPMGIVRELFVHYLSPSACARCVRVCRDWAIRAGDEDIWRYFLASTFGITLPRQSTTRTASKTGKEYQHTFPSAADDYALHCHAPPSSLFTTTEVDAGAFTMRRRHANEALFCDLSTLALEADGEELTACATAEDSFSRGTVLVTPPPQLAPKERGEIGENLCENEMAMQTGNGDIVCCAHFFHPRLEYGRWQHVYWNTEALAESAGGTGGNGERKRRERGVFCLSGLPHEEVAIGNRDAPGLSPLPRPQQLDRLVSKGRSTSSPGASPSPHPRHLVARFHGHDRGMVLALHVDEEKDRLISGDVSGCVRLWELHSGRKIGTVDLRTNLSCLVADSRTLYVGTLKGVLYTIDLEDLSDVRAHRLWGEGPASTISSLCLMQQSVIASTHRFRPEKILRRGESRRFGEKEEHAKSTPTCSFPPRSDHLDSQGTDLIKSPVLDARSSALPACATQEDRGIEHKSDSILSRDSGLMRKRSNVPSSSAGRKEKNTASCEISTQEREDIVPRLVIGFGNGSFMLLHGTQRLMSLTLSDTLSAFPSPSCSSPSSLLHHLYTLPLAEPACVFLLAMGRKSFVAAACPDRLFLWSDEDEGKREEGREREMNQPKTEMPVVPLRTFVSSPWALQMEASSNVVKTTKGSDGKGQTESGRVVDGAMMEPKDWHSGDAPCDVVMLAIWPELEERHAIEDDDQVASPVIIVTGCNHDDLLRWWDLNDAKGGTMEEAVGHPHPATGPQAVCTAITPACVSIKRGVMCDVSHQRRSKEELASLGTLCMTQAAGILLSSHLNGSMVLWHVGQRQRVASFHRLPLFESLLLTTVGLDTVACYEREIVYARRAAAVEQTPWV 1105
            MKAAGGFGGRARDVRKEVKHALNQLRWHLCEEIGVPFASIQLYVSSADYHNGNGVADDMGGGSDESGDTPRWCRQWVREGRCNRKRCRFKHVLTLAPIGARPSHKSSASMAPLLLLEGEEVEAVLTAPSNASAGAGSVGGGSGGSISNYTLVSSSSSTGQGPMLHRAVFLAVAGQRIVWDKERPEVWEAFVGACLQTVKEIDPCRNHPGITITKDRGHRVLSPIDTLRHGSSEGSLKLSPEQTKVQDFPPRSYATGNGLLAFLPMGIVRELFVHYLSPSACARCVRVCRDWAIRAGDEDIWRYFLASTFGITLPRQSTTRTASKTGKEYQHTFPSAADDYALHCHAPPSSLFTTTEVDAGAFTMRRRHANEALFCDLSTLALEADGEELTACATAEDSFSRGTVLVTPPPQLAPKERGEIGENLCENEMAMQTGNGDIVCCAHFFHPRLEYGRWQHVYWNTEALAESAGGTGGNGERKRRERGVFCLSGLPHEEVAIGNRDAPGLSPLPRPQQLDRLVSKGRSTSSPGASPSPHPRHLVARFHGHDRGMVLALHVDEEKDRLISGDVSGCVRLWELHSGRKIGTVDLRTNLSCLVADSRTLYVGTLKGVLYTIDLEDLSDVRAHRLWGEGPASTISSLCLMQQSVIASTHRFRPEKILRRGESRRFGEKEEHAKSTPTCSFPPRSDHLDSQGTDLIKSPVLDARSSALPACATQEDRGIEHKSDSILSRDSGLMRKRSNVPSSSAGRKEKNTASCEISTQEREDIVPRLVIGFGNGSFMLLHGTQRLMSLTLSDTLSAFPSPSCSSPSSLLHHLYTLPLAEPACVFLLAMGRKSFVAAACPDRLFLWSDEDEGKREEGREREMNQPKTEMPVVPLRTFVSSPWALQMEASSNVVKTTKGSDGKGQTESGRVVDGAMMEPKDWHSGDAPCDVVMLAIWPELEERHAIEDDDQVASPVIIVTGCNHDDLLRWWDLNDAKGGTMEEAVGHPHPATGPQAVCTAITPACVSIKRGVMCDVSHQRRSKEELASLGTLCMTQAAGILLSSHLNGSMVLWHVGQRQRVASFHRLPLFESLLLTTVGLDTVACYEREIVYARRAAAVEQTPWV
Sbjct:    1 MKAAGGFGGRARDVRKEVKHALNQLRWHLCEEIGVPFASIQLYVSSADYHNGNGVADDMGGGSDESGDTPRWCRQWVREGRCNRKRCRFKHVLTLAPIGARPSHKSSASMAPLLLLEGEEVEAVLTAPSNASAGAGSVGGGSGGSISNYTLVSSSSSTGQGPMLHRAVFLAVAGQRIVWDKERPEVWEAFVGACLQTVKEIDPCRNHPGITITKDRGHRVLSPIDTLRHGSSEGSLKLSPEQTKVQDFPPRSYATGNGLLAFLPMGIVRELFVHYLSPSACARCVRVCRDWAIRAGDEDIWRYFLASTFGITLPRQSTTRTASKTGKEYQHTFPSAADDYALHCHAPPSSLFTTTEVDAGAFTMRRRHANEALFCDLSTLALEADGEELTACATAEDSFSRGTVLVTPPPQLAPKERGEIGENLCENEMAMQTGNGDIVCCAHFFHPRLEYGRWQHVYWNTEALAESAGGTGGNGERKRRERGVFCLSGLPHEEVAIGNRDAPGLSPLPRPQQLDRLVSKGRSTSSPGASPSPHPRHLVARFHGHDRGMVLALHVDEEKDRLISGDVSGCVRLWELHSGRKIGTVDLRTNLSCLVADSRTLYVGTLKGVLYTIDLEDLSDVRAHRLWGEGPASTISSLCLMQQSVIASTHRFRPEKILRRGESRRFGEKEEHAKSTPTCSFPPRSDHLDSQGTDLIKSPVLDARSSALPACATQEDRGIEHKSDSILSRDSGLMRKRSNVPSSSAGRKEKNTASCEISTQEREDIVPRLVIGFGNGSFMLLHGTQRLMSLTLSDTLSAFPSPSCSSPSSLLHHLYTLPLAEPACVFLLAMGRKSFVAAACPDRLFLWSDEDEGKREEGREREMNQPKTEMPVVPLRTFVSSPWALQMEASSNVVKTTKGSDGKGQTESGRVVDGAMMEPKDWHSGDAPCDVVMLAIWPELEERHAIEDDDQVASPVIIVTGCNHDDLLRWWDLNDAKGGTMEEAVGHPHPATGPQAVCTAITPACVSIKRGVMCDVSHQRRSKEELASLGTLCMTQAAGILLSSHLNGSMVLWHVGQRQRVASFHRLPLFESLLLTTVGLDTVACYEREIVYARRAAAVEQTPWV 1105
The following BLAST results are available for this feature:
BLAST of EWM29578.1 vs. NCBI_GenBank
Analysis Date: 2020-04-07 (BLAST analysis for N. gaditana B-31)
Total hits: 1
Match NameE-valueIdentityDescription
gi|585112149|gb|EWM29578.1|0.000e+0100.00Zinc finger, CCCH-type protein [Nannochloropsis ga... [more]
back to top
Relationships

This CDS is a part of the following mRNA feature(s):

Feature NameUnique NameSpeciesType
rna1145rna1145Nannochloropsis gaditana (N. gaditana B-31)mRNA


Sequences
Synonyms
Publications