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Properties
| Property Name | Value |
|---|
| Product | hypothetical protein |
| Orig transcript id | gnl|cribi|Naga_100006g24.8628.mrna |
| Orig protein id | gnl|cribi|Naga_100006g24.8628 |
| Gbkey | mRNA |
Alignments
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| CM002456.1 | supercontig | CM002456.1:1298261..1300610 - |
Analyses
This mRNA is derived from or has results from the following analyses
Relationships
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
mRNA sequence >rna1143 ID=rna1143|Name=rna1143|organism=Nannochloropsis gaditana|type=mRNA|length=1650bp
GGCTTACATGTCAACATTCTTACCCCTCCCATCCGTCTCTATACAGTTTC
CTCCCGTCCTTTAGTTGTCAGGTGGCTGACCTGCAACGTAGAGCTTCTTC
TTGCTCATTTTTTGGGTGCCTTCGATGACCATGTTCCGGTGCGGTGGTCA
AATCGTGTGCGCGCACTTCGTTTGCTGCTTCCTCCTCCTCGTTTTCCGTC
ACGGCAGCTCCTTGTCTGTCCGTGGTGGTGTTCCAGTTTTCCAAGATTTT
CCTGAGGGTGTGGCTGCATCGGATGGTACCGCTGTTGTTGACGACGACCC
TTGGGCCCCGGTGACTCAGGCAATAAATGACTACCACATGCAAGACTTCG
CGGTGGTAGTAACCAATTCCTCGGGCGTTCAATACCTGTACGAGAAGGGC
AATATTTCTTACACGGATACGGTCATGAATGTGGCAAGCACCACTAAGTG
GGTGTCGGGAACAATGATCATGCGCGTCGTCGCCTCGGGTGCCCTGAGAC
TGAACGACTACTGCCATACTTTCTTCCCCTGGTGGACACGCGACTCCTCC
GATCCCCGCTCCCGCGTTCAGCTCAAACACCTGCTCTCGTTCACCTCCGG
GTATTACCAGCTGACCTACGGCGCCTCCGTTCCTTGCTTTCGCAATGCCT
CCATGGACTACCTGGCGTGCGTGCGCGAGTTGTACGAAACGGTGGAGCTC
CGGTGGGAACCGGGAACGGTCTGGGATTACTCGTCCTTGCATTTGAAAAT
CGCGGGAGGCATGGCCGTGGCCGCCTCGGGTAGAAGTATCCGGGAACTGC
TGGAGGAGACGCTGGCGGAGCTGGGCATGACCAACAGTTACTACGACATG
GGCCAAAATCCCGAGCTGGCTGGTAGTTTGTGGACGACAGGGGAAGACTA
TAACAAGTTCTTGGAGTCGATGTACCTGCATCGGGTGTTGCCGGCAGAGA
TCGTGAAAGAAATGGAGAGCGACCACACACCCTCCCCCGTTGTGAAAGCC
TCCAAGAAAAGCTGGGGCCTGGGGATGGCTGTAGGTCATTACTCTTTTGC
CAACTGGCTGGAATGTTGGGGATCATTGCCGGAACCGCAGCCTTTTCGGC
TGGAGTGCTACGAGAAAAGCATCCATACCTCCCCCGGTGTATTTGGGTAC
TGGCCTCTGATTGACCGTTTCAACAACTATTGGATGCAAATTGTCTACAA
CGGTCCGCCGATCATTGGTTGCATTGACGGCTGGGTGGCCCGCGGAGTCA
TCAAGCCTGTGGTTGATGCAGTGATGGGTGACGAAAAATTCATTCCAGGA
AGAAAGCTTGACATTGAATTGGAGAAGAAGCGTCTTGGAGAGCTTCTCAA
CCTGGATCTTCTTGCACAATGGCCGAATTAAGTGTGCGGATACGAGTACG
AGAAAGCAACACGACTGGGTGGTACATAGTCGTTGGAACATCATTACAAC
AGAGTCGACGGGACGAAATGCGATACAACATTTGTTTGCGAAAAGAACTA
CCCTCAGGATCATATTTTTGCAACTAATCGTCATCAAAGTTATTACGTAT
TTCATGGACGATATTGTAAATGTTGCGGGGTTTTGATCAATAAAACACAA
CCTCCAACCAGTAAAAATATGGACAAAAGTATCAACATTCGCCCTTCCCA back to topprotein sequence of rna1143 >rna1143-protein ID=rna1143-protein|Name=rna1143|organism=Nannochloropsis gaditana|type=polypeptide|length=735bp
MSANSEEQSQVFPHTFTGHLCPLQSDICPEKTLCLAAASCSADTPHCPTV
AQLLFFQEKHVYECSSEAVLTFGRVTARLKTSGELQHERALAIIHTWDTT
SRAQRVDVSCGAANLILRALASLNSTYASPVLQVPVRFGTSVACCPAGEL
LEGVHVPAFVAELDEGATSASCGFIYTGGEFRIWTDLNFSARYFDAEEAN
VYHIQAGVLPCYLFGCIIHRTYQEQFFDRLAVHMLKDNTEEKTMSMVAQT
LGRDQVVTQNLLRIRYVVRNSGHYACLALNVLPIDYPGAMNGESPAATPS
ALSSVMPPAGFPDPVTQFCVQRAALRLGGEGGGIGEAERLHRCTAEREEG
LLPDGLQFSATVEPVPVKGVEVPVSCVLVTVDKHMNSELSATPAGIYDQY
ANTSTSTGSTCGNRSRRNAASLRGSTSVHDFLNESTLLRGQTGAHVSDAA
EIIYYDVSGSISRAPRNDKQACDLDRHEWKLRTSCNSPYQAEDQLLPRLV
SNCRKSWKLKCLKKRKRDIGIAQQRSDTESNSRQKFGNNPSQQDEVNQRK
EEEGERMQRHYELQYQHLPSKTSGDETKETQDSRKPEQAKYQREHTKSQL
SIAGLQKVESSKALASANCTTFSSPALSTYWQKGSPSAQYRHALYPVVLD
QAEIDFGAMRLPLSPSSDNLRAHAEESHLSQRYERLNLDILDYNDINLGS
CSNGNDGPSTHNKCEASQTYLVPSCKTPQHNVETA back to topmRNA from alignment at CM002456.1:1298261..1300610- Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below. >rna1143 ID=rna1143|Name=rna1143|organism=Nannochloropsis gaditana|type=mRNA|length=2350bp|location=Sequence derived from alignment at CM002456.1:1298261..1300610- (Nannochloropsis gaditana)
ATGTCGGCAAACTCTGAAGAGCAATCTCAAGTTTTTCCGCATACGTTCAC
AGGGCACTTGTGTCCCCTGCAATCGGATATTTGTCCTGAGAAGACCCTAT
GCTTGGCAGCGGCTTCGTGCTCCGCGGATACCCCACATTGTCCTACGGTA
GCTCAGCTCCTTTTTTTTCAAGAAAAGCACGTTTATGAATGTAGCAGTGA
AGCAGTGCTCACCTTTGGACGCGTCACCGCCCGATTAAAAACCTCTGGCG
AGCTTCAGCATGAGAGAGCCCTAGCCATAATGTACGTTGTGGCTGTTTAC
CTGGGTTTTGTCAGAAAGAGGAAACAAAATGCCATCGGGAGGAAGTAACG
GGGATGATTGCTTATTTCATGCAATAACTTTACGCTCTTTTTCACTTATT
TTCTGAAAACAATGTCCACGCAGTCATACATGGGACACAACTTCACGTGC
ACAACGTGTCGACGTCTCTTGCGGTGCAGCCAATTTAATTCTTCGTGCTC
TGGCCAGTCTGAATAGTACCTACGCATCTCCTGTCCTGCAAGTCCCCGTT
CGTTTCGGTACCTCTGTTGCCTGTTGCCCTGCGGGTGAGCTTTTAGAGGG
CGTACACGTGCCCGCTTTTGTGGCTGAGTTAGATGAGGGAGCTACATCAG
CGTCATGTGGCTTCATTTACACCGGTGGAGAATTTCGAATTTGGACTGAT
CTAAATTTCTCGGCAAGGTATTTTGATGCTGAGGAGGCAAATGTTTACCA
TATACAGGCAGGAGTCCTCCCATGCTACCTTTTTGGCTGCATAATCCATC
GGACTTACCAAGAACAATTCTTTGACCGCTTAGCTGTACACATGCTGAAA
GACAATACTGAAGAAAAAACCATGTCAATGGTGGCTCAAACGCTAGGAAG
GGACCAGGTCGTCACGCAGAACCTTTTGCGCATCCGGTACGTGGTGCGAA
ATAGCGGCCATTACGCATGTCTAGCTTTGAATGTGCTTCCCATAGATTAC
CCTGGTGCCATGAACGGGGAATCGCCTGCTGCTACACCCTCTGCTTTGTC
GTCGGTGATGCCACCAGCTGGGTTTCCCGATCCAGTCACGCAATTTTGTG
TGCAGAGGGCGGCGTTACGACTTGGAGGAGAGGGGGGAGGGATTGGAGAA
GCAGAGCGATTACATCGGTGTACGGCGGAAAGGGAGGAAGGCCTCTTACC
TGATGGTCTTCAATTCTCAGCGACAGTAGAACCTGTACCGGTGAAGGGCG
TTGAGGTCCCGGTCTCGTGTGTTTTAGTCACGGTAGACAAACACATGAAC
TCGGAGTTGTCGGCCACACCGGCTGGAATATACGATCAATATGCTAATAC
TAGCACTTCTACTGGGAGCACCTGTGGGAACAGAAGTCGAAGGAATGCTG
CTTCACTTCGTGGTAGCACGAGCGTCCATGACTTCTTAAATGAATCTACC
TTGCTTCGTGGGCAGACAGGAGCACACGTATCCGACGCAGCAGAGATTAT
TTACTACGATGTATCGGGTTCAATATCGCGCGCCCCCCGCAACGATAAGC
AAGCTTGCGATCTTGATCGTCATGAGTGGAAGCTGCGCACATCGTGTAAC
AGCCCTTATCAGGCTGAAGACCAGCTTTTGCCGCGACTTGTATCAAATTG
CCGAAAGAGCTGGAAGCTCAAGTGTCTTAAAAAAAGGAAACGGGACATTG
GGATTGCACAGCAACGCAGTGATACTGAGTCAAACAGCCGGCAGAAATTT
GGAAACAATCCCTCTCAGCAAGATGAGGTTAATCAGCGCAAAGAAGAAGA
GGGCGAAAGAATGCAACGGCATTACGAGCTACAGTATCAGCATCTTCCCT
CCAAAACCTCGGGCGATGAGACTAAGGAAACTCAAGATTCTAGGAAGCCG
GAGCAGGCCAAATACCAGCGAGAGCATACAAAGTCCCAATTAAGTATCGC
GGGTCTACAAAAAGTAGAGTCGAGTAAAGCCCTCGCCTCCGCCAACTGTA
CCACATTCTCATCTCCTGCCTTGTCTACATATTGGCAAAAGGGTTCTCCA
TCAGCACAGTATCGACACGCCCTCTATCCTGTGGTATTGGATCAAGCTGA
GATTGACTTTGGAGCCATGCGTCTTCCTCTGTCCCCATCCTCTGATAATT
TGCGTGCTCATGCTGAAGAATCGCACCTATCTCAGCGCTACGAACGATTA
AATCTTGATATTCTTGACTATAATGACATTAATCTTGGTAGCTGTAGCAA
TGGGAATGACGGACCGAGTACTCACAATAAGTGTGAAGCAAGCCAAACGT
ATCTCGTTCCGTCCTGTAAGACTCCTCAGCACAACGTTGAGACCGCCTAA
back to topCoding sequence (CDS) from alignment at CM002456.1:1298261..1300610- >rna1143 ID=rna1143|Name=rna1143|organism=Nannochloropsis gaditana|type=CDS|length=4416bp|location=Sequence derived from alignment at CM002456.1:1298261..1300610- (Nannochloropsis gaditana)
TCATACATGGGACACAACTTCACGTGCACAACGTGTCGACGTCTCTTGCG
GTGCAGCCAATTTAATTCTTCGTGCTCTGGCCAGTCTGAATAGTACCTAC
GCATCTCCTGTCCTGCAAGTCCCCGTTCGTTTCGGTACCTCTGTTGCCTG
TTGCCCTGCGGGTGAGCTTTTAGAGGGCGTACACGTGCCCGCTTTTGTGG
CTGAGTTAGATGAGGGAGCTACATCAGCGTCATGTGGCTTCATTTACACC
GGTGGAGAATTTCGAATTTGGACTGATCTAAATTTCTCGGCAAGGTATTT
TGATGCTGAGGAGGCAAATGTTTACCATATACAGGCAGGAGTCCTCCCAT
GCTACCTTTTTGGCTGCATAATCCATCGGACTTACCAAGAACAATTCTTT
GACCGCTTAGCTGTACACATGCTGAAAGACAATACTGAAGAAAAAACCAT
GTCAATGGTGGCTCAAACGCTAGGAAGGGACCAGGTCGTCACGCAGAACC
TTTTGCGCATCCGGTACGTGGTGCGAAATAGCGGCCATTACGCATGTCTA
GCTTTGAATGTGCTTCCCATAGATTACCCTGGTGCCATGAACGGGGAATC
GCCTGCTGCTACACCCTCTGCTTTGTCGTCGGTGATGCCACCAGCTGGGT
TTCCCGATCCAGTCACGCAATTTTGTGTGCAGAGGGCGGCGTTACGACTT
GGAGGAGAGGGGGGAGGGATTGGAGAAGCAGAGCGATTACATCGGTGTAC
GGCGGAAAGGGAGGAAGGCCTCTTACCTGATGGTCTTCAATTCTCAGCGA
CAGTAGAACCTGTACCGGTGAAGGGCGTTGAGGTCCCGGTCTCGTGTGTT
TTAGTCACGGTAGACAAACACATGAACTCGGAGTTGTCGGCCACACCGGC
TGGAATATACGATCAATATGCTAATACTAGCACTTCTACTGGGAGCACCT
GTGGGAACAGAAGTCGAAGGAATGCTGCTTCACTTCGTGGTAGCACGAGC
GTCCATGACTTCTTAAATGAATCTACCTTGCTTCGTGGGCAGACAGGAGC
ACACGTATCCGACGCAGCAGAGATTATTTACTACGATGTATCGGGTTCAA
TATCGCGCGCCCCCCGCAACGATAAGCAAGCTTGCGATCTTGATCGTCAT
GAGTGGAAGCTGCGCACATCGTGTAACAGCCCTTATCAGGCTGAAGACCA
GCTTTTGCCGCGACTTGTATCAAATTGCCGAAAGAGCTGGAAGCTCAAGT
GTCTTAAAAAAAGGAAACGGGACATTGGGATTGCACAGCAACGCAGTGAT
ACTGAGTCAAACAGCCGGCAGAAATTTGGAAACAATCCCTCTCAGCAAGA
TGAGGTTAATCAGCGCAAAGAAGAAGAGGGCGAAAGAATGCAACGGCATT
ACGAGCTACAGTATCAGCATCTTCCCTCCAAAACCTCGGGCGATGAGACT
AAGGAAACTCAAGATTCTAGGAAGCCGGAGCAGGCCAAATACCAGCGAGA
GCATACAAAGTCCCAATTAAGTATCGCGGGTCTACAAAAAGTAGAGTCGA
GTAAAGCCCTCGCCTCCGCCAACTGTACCACATTCTCATCTCCTGCCTTG
TCTACATATTGGCAAAAGGGTTCTCCATCAGCACAGTATCGACACGCCCT
CTATCCTGTGGTATTGGATCAAGCTGAGATTGACTTTGGAGCCATGCGTC
TTCCTCTGTCCCCATCCTCTGATAATTTGCGTGCTCATGCTGAAGAATCG
CACCTATCTCAGCGCTACGAACGATTAAATCTTGATATTCTTGACTATAA
TGACATTAATCTTGGTAGCTGTAGCAATGGGAATGACGGACCGAGTACTC
ACAATAAGTGTGAAGCAAGCCAAACGTATCTCGTTCCGTCCTGTAAGACT
CCTCAGCACAACGTTGAGACCGCCTAAATGTCGGCAAACTCTGAAGAGCA
ATCTCAAGTTTTTCCGCATACGTTCACAGGGCACTTGTGTCCCCTGCAAT
CGGATATTTGTCCTGAGAAGACCCTATGCTTGGCAGCGGCTTCGTGCTCC
GCGGATACCCCACATTGTCCTACGGTAGCTCAGCTCCTTTTTTTTCAAGA
AAAGCACGTTTATGAATGTAGCAGTGAAGCAGTGCTCACCTTTGGACGCG
TCACCGCCCGATTAAAAACCTCTGGCGAGCTTCAGCATGAGAGAGCCCTA
GCCATAATTCATACATGGGACACAACTTCACGTGCACAACGTGTCGACGT
CTCTTGCGGTGCAGCCAATTTAATTCTTCGTGCTCTGGCCAGTCTGAATA
GTACCTACGCATCTCCTGTCCTGCAAGTCCCCGTTCGTTTCGGTACCTCT
GTTGCCTGTTGCCCTGCGGGTGAGCTTTTAGAGGGCGTACACGTGCCCGC
TTTTGTGGCTGAGTTAGATGAGGGAGCTACATCAGCGTCATGTGGCTTCA
TTTACACCGGTGGAGAATTTCGAATTTGGACTGATCTAAATTTCTCGGCA
AGGTATTTTGATGCTGAGGAGGCAAATGTTTACCATATACAGGCAGGAGT
CCTCCCATGCTACCTTTTTGGCTGCATAATCCATCGGACTTACCAAGAAC
AATTCTTTGACCGCTTAGCTGTACACATGCTGAAAGACAATACTGAAGAA
AAAACCATGTCAATGGTGGCTCAAACGCTAGGAAGGGACCAGGTCGTCAC
GCAGAACCTTTTGCGCATCCGGTACGTGGTGCGAAATAGCGGCCATTACG
CATGTCTAGCTTTGAATGTGCTTCCCATAGATTACCCTGGTGCCATGAAC
GGGGAATCGCCTGCTGCTACACCCTCTGCTTTGTCGTCGGTGATGCCACC
AGCTGGGTTTCCCGATCCAGTCACGCAATTTTGTGTGCAGAGGGCGGCGT
TACGACTTGGAGGAGAGGGGGGAGGGATTGGAGAAGCAGAGCGATTACAT
CGGTGTACGGCGGAAAGGGAGGAAGGCCTCTTACCTGATGGTCTTCAATT
CTCAGCGACAGTAGAACCTGTACCGGTGAAGGGCGTTGAGGTCCCGGTCT
CGTGTGTTTTAGTCACGGTAGACAAACACATGAACTCGGAGTTGTCGGCC
ACACCGGCTGGAATATACGATCAATATGCTAATACTAGCACTTCTACTGG
GAGCACCTGTGGGAACAGAAGTCGAAGGAATGCTGCTTCACTTCGTGGTA
GCACGAGCGTCCATGACTTCTTAAATGAATCTACCTTGCTTCGTGGGCAG
ACAGGAGCACACGTATCCGACGCAGCAGAGATTATTTACTACGATGTATC
GGGTTCAATATCGCGCGCCCCCCGCAACGATAAGCAAGCTTGCGATCTTG
ATCGTCATGAGTGGAAGCTGCGCACATCGTGTAACAGCCCTTATCAGGCT
GAAGACCAGCTTTTGCCGCGACTTGTATCAAATTGCCGAAAGAGCTGGAA
GCTCAAGTGTCTTAAAAAAAGGAAACGGGACATTGGGATTGCACAGCAAC
GCAGTGATACTGAGTCAAACAGCCGGCAGAAATTTGGAAACAATCCCTCT
CAGCAAGATGAGGTTAATCAGCGCAAAGAAGAAGAGGGCGAAAGAATGCA
ACGGCATTACGAGCTACAGTATCAGCATCTTCCCTCCAAAACCTCGGGCG
ATGAGACTAAGGAAACTCAAGATTCTAGGAAGCCGGAGCAGGCCAAATAC
CAGCGAGAGCATACAAAGTCCCAATTAAGTATCGCGGGTCTACAAAAAGT
AGAGTCGAGTAAAGCCCTCGCCTCCGCCAACTGTACCACATTCTCATCTC
CTGCCTTGTCTACATATTGGCAAAAGGGTTCTCCATCAGCACAGTATCGA
CACGCCCTCTATCCTGTGGTATTGGATCAAGCTGAGATTGACTTTGGAGC
CATGCGTCTTCCTCTGTCCCCATCCTCTGATAATTTGCGTGCTCATGCTG
AAGAATCGCACCTATCTCAGCGCTACGAACGATTAAATCTTGATATTCTT
GACTATAATGACATTAATCTTGGTAGCTGTAGCAATGGGAATGACGGACC
GAGTACTCACAATAAGTGTGAAGCAAGCCAAACGTATCTCGTTCCGTCCT
GTAAGACTCCTCAGCACAACGTTGAGACCGCCTAAATGTCGGCAAACTCT
GAAGAGCAATCTCAAGTTTTTCCGCATACGTTCACAGGGCACTTGTGTCC
CCTGCAATCGGATATTTGTCCTGAGAAGACCCTATGCTTGGCAGCGGCTT
CGTGCTCCGCGGATACCCCACATTGTCCTACGGTAGCTCAGCTCCTTTTT
TTTCAAGAAAAGCACGTTTATGAATGTAGCAGTGAAGCAGTGCTCACCTT
TGGACGCGTCACCGCCCGATTAAAAACCTCTGGCGAGCTTCAGCATGAGA
GAGCCCTAGCCATAAT back to top
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