EWM29539.1, cds1142 (CDS) Nannochloropsis gaditana

Overview
NameEWM29539.1
Unique Namecds1142
TypeCDS
OrganismNannochloropsis gaditana (N. gaditana B-31)
Alignment locationCM002456.1:1300330..1300610 -
Alignment locationCM002456.1:1298261..1300187 -

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Properties
Property NameValue
Protein idEWM29539.1
Producthypothetical protein
Orig transcript idgnl|cribi|Naga_100006g24.8628.mrna
GbkeyCDS
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
CM002456.1supercontigCM002456.1:1300330..1300610 -
CM002456.1supercontigCM002456.1:1298261..1300187 -
Analyses
This CDS is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST analysis for N. gaditana B-312020-04-07
InterPro analysis for N. gaditana B-312020-04-06
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
Homology
BLAST of EWM29539.1 vs. NCBI_GenBank
Match: gi|585112110|gb|EWM29539.1| (hypothetical protein Naga_100006g24 [Nannochloropsis gaditana])

HSP 1 Score: 1535.39 bits (3974), Expect = 0.000e+0
Identity = 735/735 (100.00%), Postives = 735/735 (100.00%), Query Frame = 0
Query:    1 MSANSEEQSQVFPHTFTGHLCPLQSDICPEKTLCLAAASCSADTPHCPTVAQLLFFQEKHVYECSSEAVLTFGRVTARLKTSGELQHERALAIIHTWDTTSRAQRVDVSCGAANLILRALASLNSTYASPVLQVPVRFGTSVACCPAGELLEGVHVPAFVAELDEGATSASCGFIYTGGEFRIWTDLNFSARYFDAEEANVYHIQAGVLPCYLFGCIIHRTYQEQFFDRLAVHMLKDNTEEKTMSMVAQTLGRDQVVTQNLLRIRYVVRNSGHYACLALNVLPIDYPGAMNGESPAATPSALSSVMPPAGFPDPVTQFCVQRAALRLGGEGGGIGEAERLHRCTAEREEGLLPDGLQFSATVEPVPVKGVEVPVSCVLVTVDKHMNSELSATPAGIYDQYANTSTSTGSTCGNRSRRNAASLRGSTSVHDFLNESTLLRGQTGAHVSDAAEIIYYDVSGSISRAPRNDKQACDLDRHEWKLRTSCNSPYQAEDQLLPRLVSNCRKSWKLKCLKKRKRDIGIAQQRSDTESNSRQKFGNNPSQQDEVNQRKEEEGERMQRHYELQYQHLPSKTSGDETKETQDSRKPEQAKYQREHTKSQLSIAGLQKVESSKALASANCTTFSSPALSTYWQKGSPSAQYRHALYPVVLDQAEIDFGAMRLPLSPSSDNLRAHAEESHLSQRYERLNLDILDYNDINLGSCSNGNDGPSTHNKCEASQTYLVPSCKTPQHNVETA 735
            MSANSEEQSQVFPHTFTGHLCPLQSDICPEKTLCLAAASCSADTPHCPTVAQLLFFQEKHVYECSSEAVLTFGRVTARLKTSGELQHERALAIIHTWDTTSRAQRVDVSCGAANLILRALASLNSTYASPVLQVPVRFGTSVACCPAGELLEGVHVPAFVAELDEGATSASCGFIYTGGEFRIWTDLNFSARYFDAEEANVYHIQAGVLPCYLFGCIIHRTYQEQFFDRLAVHMLKDNTEEKTMSMVAQTLGRDQVVTQNLLRIRYVVRNSGHYACLALNVLPIDYPGAMNGESPAATPSALSSVMPPAGFPDPVTQFCVQRAALRLGGEGGGIGEAERLHRCTAEREEGLLPDGLQFSATVEPVPVKGVEVPVSCVLVTVDKHMNSELSATPAGIYDQYANTSTSTGSTCGNRSRRNAASLRGSTSVHDFLNESTLLRGQTGAHVSDAAEIIYYDVSGSISRAPRNDKQACDLDRHEWKLRTSCNSPYQAEDQLLPRLVSNCRKSWKLKCLKKRKRDIGIAQQRSDTESNSRQKFGNNPSQQDEVNQRKEEEGERMQRHYELQYQHLPSKTSGDETKETQDSRKPEQAKYQREHTKSQLSIAGLQKVESSKALASANCTTFSSPALSTYWQKGSPSAQYRHALYPVVLDQAEIDFGAMRLPLSPSSDNLRAHAEESHLSQRYERLNLDILDYNDINLGSCSNGNDGPSTHNKCEASQTYLVPSCKTPQHNVETA
Sbjct:    1 MSANSEEQSQVFPHTFTGHLCPLQSDICPEKTLCLAAASCSADTPHCPTVAQLLFFQEKHVYECSSEAVLTFGRVTARLKTSGELQHERALAIIHTWDTTSRAQRVDVSCGAANLILRALASLNSTYASPVLQVPVRFGTSVACCPAGELLEGVHVPAFVAELDEGATSASCGFIYTGGEFRIWTDLNFSARYFDAEEANVYHIQAGVLPCYLFGCIIHRTYQEQFFDRLAVHMLKDNTEEKTMSMVAQTLGRDQVVTQNLLRIRYVVRNSGHYACLALNVLPIDYPGAMNGESPAATPSALSSVMPPAGFPDPVTQFCVQRAALRLGGEGGGIGEAERLHRCTAEREEGLLPDGLQFSATVEPVPVKGVEVPVSCVLVTVDKHMNSELSATPAGIYDQYANTSTSTGSTCGNRSRRNAASLRGSTSVHDFLNESTLLRGQTGAHVSDAAEIIYYDVSGSISRAPRNDKQACDLDRHEWKLRTSCNSPYQAEDQLLPRLVSNCRKSWKLKCLKKRKRDIGIAQQRSDTESNSRQKFGNNPSQQDEVNQRKEEEGERMQRHYELQYQHLPSKTSGDETKETQDSRKPEQAKYQREHTKSQLSIAGLQKVESSKALASANCTTFSSPALSTYWQKGSPSAQYRHALYPVVLDQAEIDFGAMRLPLSPSSDNLRAHAEESHLSQRYERLNLDILDYNDINLGSCSNGNDGPSTHNKCEASQTYLVPSCKTPQHNVETA 735          
BLAST of EWM29539.1 vs. NCBI_GenBank
Match: gi|585107465|gb|EWM25637.1| (hypothetical protein Naga_100037g11 [Nannochloropsis gaditana] >gi|585107466|gb|EWM25638.1| hypothetical protein Naga_100037g11 [Nannochloropsis gaditana])

HSP 1 Score: 186.422 bits (472), Expect = 4.774e-46
Identity = 101/273 (37.00%), Postives = 154/273 (56.41%), Query Frame = 0
Query:   62 YECSSEAVLTFGRVTARLKTSGELQHERALAIIHTWDTTSRAQRVDVSCGAANLILRALASLNSTYASPVLQVPVRFGTSVACCPAGELLEGVHVPAFVAELDEGATSASCGFIYTGGEFRIWTDLNFSARYFDAEEANVYHIQAGVLPCYLFGCIIHRTYQEQFFDRLAVHMLKDNTEEKTMSMVAQTLGRDQVVTQNLLRIRYVVRNSGHYACLALNVLPIDYPGAMNGESPAATPSALSSVMP-PAGFPDPVTQFCVQRAALRLGGEGGG 333
            Y+  + A   F +V A+LK  G+LQH++ALAII TW+      +VD +CG  NL+LR LAS   +    + QV +R   S+      +L+E  ++PA V  L E A S SCGF++  G FR+WT+  FSA Y   E+ N +    G+LP + FG I     ++ F++ +A HML D++E  T SMV++T+GRD  + + L+ IRY + N G  +  A+N+ P++Y  A   +S A + S  S+++  P     P +    +  A   GGE GG
Sbjct:   33 YDHCALAARKFAQVAAQLKAVGKLQHDKALAIIRTWERCCELNKVDATCGVTNLLLRVLASPTPSGVDCIPQVQMRTDLSLWLLSIDKLMEPKNMPATVRSLREEAVSMSCGFVHAHGTFRVWTNDRFSAEYMSTEKVNNWLADTGLLPFFCFGTIFSPASRDNFYEYVAEHMLADSSEGHTTSMVSETVGRDGRLMKRLVTIRYEILNGGQNSYFAMNLRPLEYSNAAVHDSIATSVSFSSTLISTPQLSLSPRSMSRARIGAFLAGGEKGG 305          
BLAST of EWM29539.1 vs. NCBI_GenBank
Match: gi|585110393|gb|EWM28051.1| (fungal specific transcription [Nannochloropsis gaditana])

HSP 1 Score: 145.206 bits (365), Expect = 3.339e-32
Identity = 81/254 (31.89%), Postives = 128/254 (50.39%), Query Frame = 0
Query:   64 CSSEAVLTFGRVTARLKTSGELQHERALAIIHTWDTTSRAQRVDVSCGAANLILRALASLNSTYASPVL-----------QVPVRFGTSVACCPAGELLEGVHVPAFVAELDEGATSASCGFIYTGGEFRIWTDLNFSARYFDAEEANVYHIQAGVLPCYLFGCIIHRTYQEQFFDRLAVHMLKDNTEEKTMSMVAQTLGRDQVVTQNLLRIRYVVRNSGHYACLALNVLPIDYPG-AMNGESPAATPSALSSV 305
            C + A L FG    R+  +G LQH + LAI+ TWD  +    +D+SCGA+  I+R LA   S   +              + PV +   +      + L+  H+P++V+ L +G  SA  G++Y  G++R+WT   F+ R+  A   N    Q  +LPC+LFG  +    +  F+  L  +ML    E + M++ A  +  D  V + L+R RY+V N G Y+C AL+ L I  PG  +    P   PS+++S 
Sbjct:  602 CKTTAPL-FGETVLRMIDTGRLQHLKTLAILRTWDFYNHKHGIDISCGASAAIVRVLALRKSAAYTSGSGESSESVGTNAEQPVEWNDDLLAMDRQDALDQAHMPSYVSSLQDGGDSAVGGYVYCSGQYRLWTGKRFADRFMTASTVNSLFDQTKILPCFLFGSFLAPNDRPNFYRSLIEYMLGPTREGREMTVTADVMELDGHVFKALVRARYMVLNEGQYSCFALSFLQI--PGLPVRFVPPTIHPSSIASA 852          
BLAST of EWM29539.1 vs. NCBI_GenBank
Match: gi|553178084|ref|XP_005852521.1| (hypothetical protein NGA_0534002 [Nannochloropsis gaditana CCMP526] >gi|422296012|gb|EKU23311.1| hypothetical protein NGA_0534002 [Nannochloropsis gaditana CCMP526])

HSP 1 Score: 130.954 bits (328), Expect = 4.802e-30
Identity = 77/227 (33.92%), Postives = 113/227 (49.78%), Query Frame = 0
Query:   71 TFGRVTARLKTSGELQHERALAIIHTWDTTSRAQRVDVSCGAANLILRALASLNSTYASPVLQ-VPVRFGTSVACC-------PAGELLEGVHVPAFVAEL-----DEGATSASCGFIYTGGEFRIWTDLNFSARYFDAEEANVYHIQAGVLPCYLFGCIIHRTYQEQFFDRLAVHMLKDNTEEKTMSMVAQTLGRDQVVTQNLLRIRYVVRNSGHYACLALNVLPI 284
            TF  +  RL+ +G LQH +   I+  WD      + DV+CGA       L  L    ASP+   VP+ +  S+          P  E L   H+P +V  L      EGA  A CG+ Y  G F++WTD  F+ +Y+ A EAN    Q  VLPCYL+GC+ H   +  F++ L  ++L    E + ++MVA+ L  D      L++ R+ V N G Y   A++ LP+
Sbjct:   36 TFTYIGYRLRKAGRLQHYKLQGILRAWDVYCYRTKTDVTCGA-------LLGLYRILASPIPHGVPICYQASLQENISMYDDRPIEEKLSPHHMPEYVLRLCMESRKEGA--AVCGYTYVNGHFQLWTDTLFAEKYYTATEANARFTQFAVLPCYLYGCLFHPRDRPCFYELLVEYLLTKGDERRRLAMVAEVLRNDGTSEACLVQARHTVMNDGQYLAFAMSFLPL 253          
BLAST of EWM29539.1 vs. NCBI_GenBank
Match: gi|585112121|gb|EWM29550.1| (hypothetical protein Naga_100006g18 [Nannochloropsis gaditana] >gi|585112122|gb|EWM29551.1| hypothetical protein Naga_100006g18 [Nannochloropsis gaditana])

HSP 1 Score: 133.65 bits (335), Expect = 1.278e-28
Identity = 78/230 (33.91%), Postives = 114/230 (49.57%), Query Frame = 0
Query:   68 AVLTFGRVTARLKTSGELQHERALAIIHTWDTTSRAQRVDVSCGAANLILRALASLNSTYASPVLQ-VPVRFGTSVACC-------PAGELLEGVHVPAFVAEL-----DEGATSASCGFIYTGGEFRIWTDLNFSARYFDAEEANVYHIQAGVLPCYLFGCIIHRTYQEQFFDRLAVHMLKDNTEEKTMSMVAQTLGRDQVVTQNLLRIRYVVRNSGHYACLALNVLPI 284
            A  TF  +  RL+ +G LQH +   I+  WD      + DV+CGA       L  L    ASP+   VP+ +  S+          P  E L   H+P +V  L      EGA  A CG+ Y  G F++WTD  F+ +Y+ A EAN    Q  VLPCYL+GC+ H   +  F++ L  ++L    E + ++MVA+ L  D      L++ R+ V N G Y   A++ LP+
Sbjct:   33 AATTFTYIGYRLRKAGRLQHYKLQGILRAWDVYCYRTKTDVTCGA-------LLGLYRILASPIPHGVPICYQASLQENISMYDDRPIEEKLSPHHMPEYVLRLCMESRKEGA--AVCGYTYVNGHFQLWTDTLFAEKYYTATEANARFTQFAVLPCYLYGCLFHPRDRPCFYELLVEYLLTKGDERRRLAMVAEVLRNDGTSEACLVQARHTVMNDGQYLAFAMSFLPL 253          
The following BLAST results are available for this feature:
BLAST of EWM29539.1 vs. NCBI_GenBank
Analysis Date: 2020-04-07 (BLAST analysis for N. gaditana B-31)
Total hits: 5
Match NameE-valueIdentityDescription
gi|585112110|gb|EWM29539.1|0.000e+0100.00hypothetical protein Naga_100006g24 [Nannochlorops... [more]
gi|585107465|gb|EWM25637.1|4.774e-4637.00hypothetical protein Naga_100037g11 [Nannochlorops... [more]
gi|585110393|gb|EWM28051.1|3.339e-3231.89fungal specific transcription [Nannochloropsis gad... [more]
gi|553178084|ref|XP_005852521.1|4.802e-3033.92hypothetical protein NGA_0534002 [Nannochloropsis ... [more]
gi|585112121|gb|EWM29550.1|1.278e-2833.91hypothetical protein Naga_100006g18 [Nannochlorops... [more]
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Relationships

This CDS is a part of the following mRNA feature(s):

Feature NameUnique NameSpeciesType
rna1143rna1143Nannochloropsis gaditana (N. gaditana B-31)mRNA


Sequences
Synonyms
Publications