EWM29539.1, cds1142 (CDS) Nannochloropsis gaditana
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Overview
Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Analyses
This CDS is derived from or has results from the following analyses
Annotated Terms
Homology
BLAST of EWM29539.1 vs. NCBI_GenBank
Match: gi|585112110|gb|EWM29539.1| (hypothetical protein Naga_100006g24 [Nannochloropsis gaditana]) HSP 1 Score: 1535.39 bits (3974), Expect = 0.000e+0 Identity = 735/735 (100.00%), Postives = 735/735 (100.00%), Query Frame = 0
Query: 1 MSANSEEQSQVFPHTFTGHLCPLQSDICPEKTLCLAAASCSADTPHCPTVAQLLFFQEKHVYECSSEAVLTFGRVTARLKTSGELQHERALAIIHTWDTTSRAQRVDVSCGAANLILRALASLNSTYASPVLQVPVRFGTSVACCPAGELLEGVHVPAFVAELDEGATSASCGFIYTGGEFRIWTDLNFSARYFDAEEANVYHIQAGVLPCYLFGCIIHRTYQEQFFDRLAVHMLKDNTEEKTMSMVAQTLGRDQVVTQNLLRIRYVVRNSGHYACLALNVLPIDYPGAMNGESPAATPSALSSVMPPAGFPDPVTQFCVQRAALRLGGEGGGIGEAERLHRCTAEREEGLLPDGLQFSATVEPVPVKGVEVPVSCVLVTVDKHMNSELSATPAGIYDQYANTSTSTGSTCGNRSRRNAASLRGSTSVHDFLNESTLLRGQTGAHVSDAAEIIYYDVSGSISRAPRNDKQACDLDRHEWKLRTSCNSPYQAEDQLLPRLVSNCRKSWKLKCLKKRKRDIGIAQQRSDTESNSRQKFGNNPSQQDEVNQRKEEEGERMQRHYELQYQHLPSKTSGDETKETQDSRKPEQAKYQREHTKSQLSIAGLQKVESSKALASANCTTFSSPALSTYWQKGSPSAQYRHALYPVVLDQAEIDFGAMRLPLSPSSDNLRAHAEESHLSQRYERLNLDILDYNDINLGSCSNGNDGPSTHNKCEASQTYLVPSCKTPQHNVETA 735
MSANSEEQSQVFPHTFTGHLCPLQSDICPEKTLCLAAASCSADTPHCPTVAQLLFFQEKHVYECSSEAVLTFGRVTARLKTSGELQHERALAIIHTWDTTSRAQRVDVSCGAANLILRALASLNSTYASPVLQVPVRFGTSVACCPAGELLEGVHVPAFVAELDEGATSASCGFIYTGGEFRIWTDLNFSARYFDAEEANVYHIQAGVLPCYLFGCIIHRTYQEQFFDRLAVHMLKDNTEEKTMSMVAQTLGRDQVVTQNLLRIRYVVRNSGHYACLALNVLPIDYPGAMNGESPAATPSALSSVMPPAGFPDPVTQFCVQRAALRLGGEGGGIGEAERLHRCTAEREEGLLPDGLQFSATVEPVPVKGVEVPVSCVLVTVDKHMNSELSATPAGIYDQYANTSTSTGSTCGNRSRRNAASLRGSTSVHDFLNESTLLRGQTGAHVSDAAEIIYYDVSGSISRAPRNDKQACDLDRHEWKLRTSCNSPYQAEDQLLPRLVSNCRKSWKLKCLKKRKRDIGIAQQRSDTESNSRQKFGNNPSQQDEVNQRKEEEGERMQRHYELQYQHLPSKTSGDETKETQDSRKPEQAKYQREHTKSQLSIAGLQKVESSKALASANCTTFSSPALSTYWQKGSPSAQYRHALYPVVLDQAEIDFGAMRLPLSPSSDNLRAHAEESHLSQRYERLNLDILDYNDINLGSCSNGNDGPSTHNKCEASQTYLVPSCKTPQHNVETA
Sbjct: 1 MSANSEEQSQVFPHTFTGHLCPLQSDICPEKTLCLAAASCSADTPHCPTVAQLLFFQEKHVYECSSEAVLTFGRVTARLKTSGELQHERALAIIHTWDTTSRAQRVDVSCGAANLILRALASLNSTYASPVLQVPVRFGTSVACCPAGELLEGVHVPAFVAELDEGATSASCGFIYTGGEFRIWTDLNFSARYFDAEEANVYHIQAGVLPCYLFGCIIHRTYQEQFFDRLAVHMLKDNTEEKTMSMVAQTLGRDQVVTQNLLRIRYVVRNSGHYACLALNVLPIDYPGAMNGESPAATPSALSSVMPPAGFPDPVTQFCVQRAALRLGGEGGGIGEAERLHRCTAEREEGLLPDGLQFSATVEPVPVKGVEVPVSCVLVTVDKHMNSELSATPAGIYDQYANTSTSTGSTCGNRSRRNAASLRGSTSVHDFLNESTLLRGQTGAHVSDAAEIIYYDVSGSISRAPRNDKQACDLDRHEWKLRTSCNSPYQAEDQLLPRLVSNCRKSWKLKCLKKRKRDIGIAQQRSDTESNSRQKFGNNPSQQDEVNQRKEEEGERMQRHYELQYQHLPSKTSGDETKETQDSRKPEQAKYQREHTKSQLSIAGLQKVESSKALASANCTTFSSPALSTYWQKGSPSAQYRHALYPVVLDQAEIDFGAMRLPLSPSSDNLRAHAEESHLSQRYERLNLDILDYNDINLGSCSNGNDGPSTHNKCEASQTYLVPSCKTPQHNVETA 735
BLAST of EWM29539.1 vs. NCBI_GenBank
Match: gi|585107465|gb|EWM25637.1| (hypothetical protein Naga_100037g11 [Nannochloropsis gaditana] >gi|585107466|gb|EWM25638.1| hypothetical protein Naga_100037g11 [Nannochloropsis gaditana]) HSP 1 Score: 186.422 bits (472), Expect = 4.774e-46 Identity = 101/273 (37.00%), Postives = 154/273 (56.41%), Query Frame = 0
Query: 62 YECSSEAVLTFGRVTARLKTSGELQHERALAIIHTWDTTSRAQRVDVSCGAANLILRALASLNSTYASPVLQVPVRFGTSVACCPAGELLEGVHVPAFVAELDEGATSASCGFIYTGGEFRIWTDLNFSARYFDAEEANVYHIQAGVLPCYLFGCIIHRTYQEQFFDRLAVHMLKDNTEEKTMSMVAQTLGRDQVVTQNLLRIRYVVRNSGHYACLALNVLPIDYPGAMNGESPAATPSALSSVMP-PAGFPDPVTQFCVQRAALRLGGEGGG 333
Y+ + A F +V A+LK G+LQH++ALAII TW+ +VD +CG NL+LR LAS + + QV +R S+ +L+E ++PA V L E A S SCGF++ G FR+WT+ FSA Y E+ N + G+LP + FG I ++ F++ +A HML D++E T SMV++T+GRD + + L+ IRY + N G + A+N+ P++Y A +S A + S S+++ P P + + A GGE GG
Sbjct: 33 YDHCALAARKFAQVAAQLKAVGKLQHDKALAIIRTWERCCELNKVDATCGVTNLLLRVLASPTPSGVDCIPQVQMRTDLSLWLLSIDKLMEPKNMPATVRSLREEAVSMSCGFVHAHGTFRVWTNDRFSAEYMSTEKVNNWLADTGLLPFFCFGTIFSPASRDNFYEYVAEHMLADSSEGHTTSMVSETVGRDGRLMKRLVTIRYEILNGGQNSYFAMNLRPLEYSNAAVHDSIATSVSFSSTLISTPQLSLSPRSMSRARIGAFLAGGEKGG 305
BLAST of EWM29539.1 vs. NCBI_GenBank
Match: gi|585110393|gb|EWM28051.1| (fungal specific transcription [Nannochloropsis gaditana]) HSP 1 Score: 145.206 bits (365), Expect = 3.339e-32 Identity = 81/254 (31.89%), Postives = 128/254 (50.39%), Query Frame = 0
Query: 64 CSSEAVLTFGRVTARLKTSGELQHERALAIIHTWDTTSRAQRVDVSCGAANLILRALASLNSTYASPVL-----------QVPVRFGTSVACCPAGELLEGVHVPAFVAELDEGATSASCGFIYTGGEFRIWTDLNFSARYFDAEEANVYHIQAGVLPCYLFGCIIHRTYQEQFFDRLAVHMLKDNTEEKTMSMVAQTLGRDQVVTQNLLRIRYVVRNSGHYACLALNVLPIDYPG-AMNGESPAATPSALSSV 305
C + A L FG R+ +G LQH + LAI+ TWD + +D+SCGA+ I+R LA S + + PV + + + L+ H+P++V+ L +G SA G++Y G++R+WT F+ R+ A N Q +LPC+LFG + + F+ L +ML E + M++ A + D V + L+R RY+V N G Y+C AL+ L I PG + P PS+++S
Sbjct: 602 CKTTAPL-FGETVLRMIDTGRLQHLKTLAILRTWDFYNHKHGIDISCGASAAIVRVLALRKSAAYTSGSGESSESVGTNAEQPVEWNDDLLAMDRQDALDQAHMPSYVSSLQDGGDSAVGGYVYCSGQYRLWTGKRFADRFMTASTVNSLFDQTKILPCFLFGSFLAPNDRPNFYRSLIEYMLGPTREGREMTVTADVMELDGHVFKALVRARYMVLNEGQYSCFALSFLQI--PGLPVRFVPPTIHPSSIASA 852
BLAST of EWM29539.1 vs. NCBI_GenBank
Match: gi|553178084|ref|XP_005852521.1| (hypothetical protein NGA_0534002 [Nannochloropsis gaditana CCMP526] >gi|422296012|gb|EKU23311.1| hypothetical protein NGA_0534002 [Nannochloropsis gaditana CCMP526]) HSP 1 Score: 130.954 bits (328), Expect = 4.802e-30 Identity = 77/227 (33.92%), Postives = 113/227 (49.78%), Query Frame = 0
Query: 71 TFGRVTARLKTSGELQHERALAIIHTWDTTSRAQRVDVSCGAANLILRALASLNSTYASPVLQ-VPVRFGTSVACC-------PAGELLEGVHVPAFVAEL-----DEGATSASCGFIYTGGEFRIWTDLNFSARYFDAEEANVYHIQAGVLPCYLFGCIIHRTYQEQFFDRLAVHMLKDNTEEKTMSMVAQTLGRDQVVTQNLLRIRYVVRNSGHYACLALNVLPI 284
TF + RL+ +G LQH + I+ WD + DV+CGA L L ASP+ VP+ + S+ P E L H+P +V L EGA A CG+ Y G F++WTD F+ +Y+ A EAN Q VLPCYL+GC+ H + F++ L ++L E + ++MVA+ L D L++ R+ V N G Y A++ LP+
Sbjct: 36 TFTYIGYRLRKAGRLQHYKLQGILRAWDVYCYRTKTDVTCGA-------LLGLYRILASPIPHGVPICYQASLQENISMYDDRPIEEKLSPHHMPEYVLRLCMESRKEGA--AVCGYTYVNGHFQLWTDTLFAEKYYTATEANARFTQFAVLPCYLYGCLFHPRDRPCFYELLVEYLLTKGDERRRLAMVAEVLRNDGTSEACLVQARHTVMNDGQYLAFAMSFLPL 253
BLAST of EWM29539.1 vs. NCBI_GenBank
Match: gi|585112121|gb|EWM29550.1| (hypothetical protein Naga_100006g18 [Nannochloropsis gaditana] >gi|585112122|gb|EWM29551.1| hypothetical protein Naga_100006g18 [Nannochloropsis gaditana]) HSP 1 Score: 133.65 bits (335), Expect = 1.278e-28 Identity = 78/230 (33.91%), Postives = 114/230 (49.57%), Query Frame = 0
Query: 68 AVLTFGRVTARLKTSGELQHERALAIIHTWDTTSRAQRVDVSCGAANLILRALASLNSTYASPVLQ-VPVRFGTSVACC-------PAGELLEGVHVPAFVAEL-----DEGATSASCGFIYTGGEFRIWTDLNFSARYFDAEEANVYHIQAGVLPCYLFGCIIHRTYQEQFFDRLAVHMLKDNTEEKTMSMVAQTLGRDQVVTQNLLRIRYVVRNSGHYACLALNVLPI 284
A TF + RL+ +G LQH + I+ WD + DV+CGA L L ASP+ VP+ + S+ P E L H+P +V L EGA A CG+ Y G F++WTD F+ +Y+ A EAN Q VLPCYL+GC+ H + F++ L ++L E + ++MVA+ L D L++ R+ V N G Y A++ LP+
Sbjct: 33 AATTFTYIGYRLRKAGRLQHYKLQGILRAWDVYCYRTKTDVTCGA-------LLGLYRILASPIPHGVPICYQASLQENISMYDDRPIEEKLSPHHMPEYVLRLCMESRKEGA--AVCGYTYVNGHFQLWTDTLFAEKYYTATEANARFTQFAVLPCYLYGCLFHPRDRPCFYELLVEYLLTKGDERRRLAMVAEVLRNDGTSEACLVQARHTVMNDGQYLAFAMSFLPL 253 The following BLAST results are available for this feature:
BLAST of EWM29539.1 vs. NCBI_GenBank
Analysis Date: 2020-04-07 (BLAST analysis for N. gaditana B-31) Total hits: 5
Relationships
This CDS is a part of the following mRNA feature(s):
Sequences
Synonyms
Publications
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