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Properties
| Property Name | Value |
|---|
| Product | hypothetical protein |
| Orig transcript id | gnl|cribi|Naga_100006g27.8642.mrna |
| Orig protein id | gnl|cribi|Naga_100006g27.8642 |
| Gbkey | mRNA |
Alignments
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| CM002456.1 | supercontig | CM002456.1:1287536..1289513 - |
Analyses
This mRNA is derived from or has results from the following analyses
Relationships
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
mRNA sequence >rna1140 ID=rna1140|Name=rna1140|organism=Nannochloropsis gaditana|type=mRNA|length=3626bp
CTCTGCTCTTGCTGCCTGTTGATCAATTTTCCACTTCATTCATGTCTGCA
CATATACAGGATTGTCTATGACGTCTCTTGTGACATCATGGCTACGTTCG
AGTGGCGAATTTGCCAATTATAGCGGAGCTGATACGCGGGATAACCGCAA
ATCTATGAAAGAATCAGTGGCCAGTCCACGGTCCGACGAGCGCAGTAACG
ACGGCTTTTCCAAATGCCGTCCTAGAACTTTCGCAGACATGGCGGAGGAA
AACGAAGCGTTGCGGAAAGAAAATGAAATTTTGCAGAAGCAACTTGTGGA
CGAGAAAGAAAAGCATGCAGAGGAGGTCAAAGATCTGATGTATCGCTTGA
CGGAAGTAGAAAAACGCGCATCGGCGGCCGCTCTTGCAACTGGAGCGAAA
GGCGTGAGTGTGGACGCGATTTGTGAAGAAACAAGCGATACAAAGAAAGA
GAAAAAGATAGATGGTCAGGGAGGCATGCACGCAGGAGGGAAAGAAGAGG
AGCCACTGGAGGATCCGTCTAGGAAGAGGGAAGGAGAGAAGGGCATGTGT
GACAGCATGCAGGAGAAATGGGAAGGGACGAGGCTGACGCGCGGTTCATT
CAAGAAGAAGAACGATGAAGACGCCGTCGCCTGGACCTCAAACAACAGTA
TGGCCGGGAATTCCCCCTGTGCGGTCGTCCCGGTCGTGAATCATTTGAAT
GGTATAGACACGCATGCTCCTGGGACTGGGGGCCCACGACGGCCCCAGCA
GGCGCGCATGATGCGTGAATTGAAGAGCATCGGTGCCTTGGACGAGGAGG
CCACGGATGCACGGAATTCGCTGGATTTGCGGCGTTTGGTGGGCCTGGGA
ATGTGGAAATGGTTTGCGGTCGAGCAGGAGGAGGACAAGGGGGGCTGGAA
GCAACGGCGGGAAGGCAATCGTCCCAAGATGTTGCAGTTCCTGGGTGTGT
TCAAGAAGGTCAACATGCGGGCCAAGCCCGCTCCTCAGGTCCTGGTGGAG
TTTCAGCAGCAACCCTGTGAATGGTGGTCCGTGGAGGGCCTTGTGAATGA
GTACAGGGTCTCCACCGTCCGCGGCATCAACATGTTCTACTCCCGGGAGA
AAGTGGCCGCTTTCCTGGAGCGGTTGGAGGGAGGGGAAGGGGTGCGGAAG
AGGGGCGGGCGACAGACGGACCGAGGGGCGGGGACCGAGGAGGAGAAGGA
GGACGGGGGGGAGGGAGGGAAGGAGGCGGACGGAGGAAGGGGGAAGCGGA
GCAGTGGAGTGGAAAGAAAGGGGCACGCAGGCGCTCTCGGACGGCGTAGA
CGGAGGGGTAGGGGGGAAGCGGAAAGGGCGGAGCAGGTCCCGGCCAGGGT
CTCCCAGGGATGCTTGCGGTGGCGGGAGGGCCGTCAAGCGAACCCGTCGC
AGCACGTCCGCGGAGGAGCCCCCGTCGCACCCCGCCCTTCAAAATGGAGC
AAATGCTCTCGGTCCTTCTCTGCCTCATCCCGTCCGGGCTCAGGCCGCTT
CTGTCGCCCCCAGTGACGCCACCAAACCCATTCTTTGCACGTCCTCCCCC
AGTCCTTCCCTCCCTCCCTCTCCCGCGCCCTCCCCCTCCCCGAAAACCCC
GTCGGCCGGAGCATGAAATCCTTGACGCGTTCATCTCCTTGCACCTGCTC
CCTCCCTCCTCCTCCCTGACCGCCCTTCGAAACTTCAAGTTGGAGCGCTT
GACCGGGTACGGCCTGCGGGAGTACTGGCTGGTGCCGTCCGGGGGGGCCT
TGAAGCCCCAACTGTACACAGCCCGCTTTGGCTCCAAGATCGAAGCCATG
GTCGACACACAGACGGGCAAGACGAAAAAGATGATCGAGGCGGTTTACTC
GGACCGGAGCCGGCATCATTTCGACATGCGGCGGCTCATCGACGGCTTCA
CAGGGACGGAGGGCACCGTGTCGAGGAAAGGTATTGTGGGCTTGTTGAGC
AAGGAGGAGGTGGAGGACGTCTTTCGGGGCAAGAGGAAGCGGAGGCAAGG
CCGACGGGGGGAGAAGAGGCGGCAAGGCTTAGGTCAAAGGGAAAAGGGAT
TGAAGGAGGAGGAAAAAAAACACGAGGGGGAAGAGCTTGCGGGAGTGAAA
GGGGCCGGTGAGGGCAGCCAGGGGACGGTCCCGGGGGGGGAAGGGGAAAA
GGACGATGACGATGGCGAGAGGAATTTGAGCATTGGAGTCGCTGTCAACG
GGAGCCTGAAAAACGAAGGGAAGGGGGTAGGGGAGGAAGTGGAGAAGCAG
GCATTGCCCGAGAGTGCGGAGAAGGGCTCCAAAGAAAGAGGTTTGCTGAC
GGCCTTGTCGATGATGCTACCGAATGCCTTGGGGGGACAAAAGAAGGAGG
GTGATGAGAAGAGGGGAGAGGATGGTATGCTTGGCGTGGAGAAGGCCAGG
TTGGAGTCGCACAGGTCACCAAGTTCCGGCACCGCATTGGCGGCAGCCGC
CCGTATGGCTCTCAGCACGCGGATGGCTAGCAACGGCGTCCCCGCACCGC
AGCTTCCCCAATCTCTCGTTGCTCCGTTTGCTCCCTTGCCGCCTTCGACA
TTTCCCTCTGCCCCTCTCGGACCGGTCGGTCCGACGGACGTCGTGGGCCC
TGCTCGCGGTCACCCTCGACCATCGTCTCCGTCACAGAAAAGCGTCCGCA
CGACATGCAGCCCTGCTCCTGCCGGTCGCCCCTCCTTGCTCTCCCCCGGC
CAAGGAGATCAGAAGGAGAAGTGCGAAGGGGAGGGGCCAACGGTGCTGCG
AAGACAACAGCAAGCGCATAGGCACAAAGAGCAGGCCCTTGATCGACCCA
GTGGCCAGCCTGTTACCCTTGCCGCCTTGGCAAGAGCGGCTGCGGTCTCA
AAGCAACAGTTGAAGCATCTTCCACCGCGCCCACAAGAGCAAGCTTCAGT
GAGGCAGCAGACATGAGGATAGGCAAGCTTTCTAGCCCTCGTTGGGTTTG
CGAAGGTTTGCTTATTCGGTGATGTTTGGATGCAGGTGTTGCAATGAAAT
TTGAGAAGATAAGCGTGGAAATCATCCAAGAGGAGAAATGGCACGTCAAG
AATGTCGGATCGACCCGCACAGCGCAATGAATGGAATGAATCTAGTAGTA
AACATGACCGTGAAAGCTGTAGCCCGTTAAGCGGTGGGAAAGCAACTATT
ATCGGCTGGTTTTATGGAGCGTCATCATTTTTTCCCCCTTACATCTAGTA
TGAAAATCGGTACGGACCAACACATATTTTCGGGAAAGGGTTTCTGAACT
GTAAAAGTCTCAATTGTCGTCCAGTAAGAAGTGTGATTGCTCCCAAAAAA
CAGCTCAGACCTCCCGAGCTGATGTCCTGCACATTTGATCCTGAGTTTCT
ACATTGTTATAGATAAGAAGCTCACTCAAGCTCAAAACCTGCATGTAAGC
TTTCAACCACTGTTGTCGTTCAATACCCCCCACAAGCTGAGAAACATGGA
ACAGTAGTGCTTGAACATGAGGTTCTTCTTTTATCACTTCTATTATTCCG
TTCCCACTGTGAACTTCTCTCGGGCATATTGCAACAGTCGCTGCGGGGTC
GACGGCCCACTCCCACCATCTCTTGACCCCTTCTTCCGCGGACTGGTTCC
GATGCTCACCATATTTGTAACCACCT back to topprotein sequence of rna1140 >rna1140-protein ID=rna1140-protein|Name=rna1140|organism=Nannochloropsis gaditana|type=polypeptide|length=289bp
MGLLERYHASPHRQKINNVLMVAGFLSLSVPLLAEGVQFILRFRRRTDDK
TVTRRAPSKIYRVVVSGGPCSGKTSSLTHLRDACMHAGYEVLVVPEVPTL
LMQGGALYPGLDGGPRLVAFEVALIQLQIQMEESFAMIARSTGQPTVILH
DRGSVDVAAYLMPSDWLAVLSALGGLSTLDLASRYHQVVHLVTAADGAPS
FYTLSNNASRTESAKDSRVIDRRIKSAWSLHPHQVIIGNETDFAGKLAKA
TDVVLVGAHKFFSEASKETGDIEEGGCGGGENFGRRRFK back to topmRNA from alignment at CM002456.1:1287536..1289513- Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below. >rna1140 ID=rna1140|Name=rna1140|organism=Nannochloropsis gaditana|type=mRNA|length=1978bp|location=Sequence derived from alignment at CM002456.1:1287536..1289513- (Nannochloropsis gaditana)
TAACTAGATCTTTGCGTGGAATATCTCGACCCTGTGTAGTTTGGCGGGAG
AGCACAATTGCGCACACGGCGTGATACATGAAATGAAGGAACGTGTTTCG
GGGTCATATATACGGCGAGGGGTATCAAACAAAGTCTAAACCTCAGCTCA
CGTTGTCATCATGAAATCCAGATATTGATAAAGCCCTACACTTCCATTTG
GTGAATGGGATTGCTGGAACGCTACCATGCCTCGCCTCATCGACAAAAAA
TCAACAACGTTCTGATGGTGGCTGGGTTCCTATCTCTCTCCGTCCCTTTG
CTTGCAGAAGGCGTGCAATTCATTCTCCGCTTCCGTCGCCGCACTGGTAA
ATCAAATGTAACAATCGTATACTTACTCTGTAGGCCATGTGATAAGAAGA
AAGCGGTTTTCGCAATGATTTTTTCAATTTCAAATCTCTGCGCCGTTTTT
CCCTCCATGCGTTCCTCTTAGACGACAAGACTGTGACCCGAAGAGCACCC
AGCAAGATCTACCGTGTCGTCGTGTCGGGCGGGCCATGTTCTGGCAAAAC
CTCGTCGCTTACTCACCTCCGTGACGCGTGCATGCATGCAGGATATGAAG
TGTTAGTGGTCCCGGAGGTTCCCACGCTACTCATGCAAGGGGGAGCTCTT
TACCCCGGGCTGGATGGTGGGCCTCGCCTTGTTGCGTTCGAAGTTGCGCT
TATTCAATTGCAAATCCAAATGGAGGAGTCCTTCGCAATGATAGCGCGTT
CGACGGGTCAACCTACTGTCATCCTGCATGACAGAGGAAGTGTAGATGTA
GCGGCTTACTTAATGCCGTCGGACTGGCTAGCTGTCCTTTCGGCCTTGGG
AGGACTCAGTACCTTAGACTTGGCGTCGCGGTACCATCAAGTTGTTCATC
TTGTGACGGCAGCAGACGGAGCGCCTTCTTTTTACACCCTCAGGTATTTT
CGCATCTATCCCTCTGTCTTGTCTCCCCGTTGTCCGCTCCCGACTTGGAC
TTTATCCTCGATGATCCAGGTAGAGAGAGGCTCGGAGGTGTGCGCTTGAC
ATGTTCTCGATGATCCAGGTAGAGAGAGGCTCGGAGGTGTGCGCTTGACA
TGTTTGTGTGCATGTTCTCACCTTCGTTACGTAGCCCTCGTCCTGTGCTA
CAGCTGGCAATTGTACTGTGGCATCTTTCAATCCAGCACGACACGTCGTT
TTCACAAACGTTTTATTTCTTTTCTAACTGCCAGTTCAATGCTCTCATTA
TTTCCTCTTTTATGTATCGTAACATGGAACAGCAATAATGCTTCCCGCAC
CGAGTCCGCAAAAGATTCCCGTGTTATTGACCGTCGCATTAAATCGGCAT
GGAGTCTGCACCCACACCAAGTGATAATAGGAAATGAGACTGATTTTGCA
GGAAAACTCGCGAAAGCCACAGATGTTGTACTAGTGGGGGCACACAAATT
TTTCAGTGAGGCGTCGAAAGAGACAGGCGATATCGAGGAGGGAGGCTGTG
GAGGAGGGGAAAATTTTGGGAGAAGGAGATTTAAGTAGTACATACTCGTT
TGGTCTCAGCAAGGAATGTTTTCTTATTTTTCTTGGGATTGAGAGATACC
TTCTATTATCAAGGCATTGTGTCCATCTCTAAATGGGCAGTGTATACCTT
GGACGAAGTTCTCTTCCAGGACTTTTTGGTCGTCCCGATCGGCAATAAAC
TTGACTGAATGTTCTTTGCAGCATATGTAGTACATCCACAAATCTAATCA
CGCTTCCTCAGCGCAAAGGTTCCACTTTCTGGGGGGGGAGTGACGCGTAC
GTTACTGTCGGGTATTCGTCCGGGATTCGAGCTACACACTAAGCCAACCT
GCAATGAAAGCTCTTGAGAAACCAGGCAAAAATATACCATCTCTCCAAAA
CGTGAGATTAGGATTGGTACATTACCCAGGCAATATCTTCCACTATGATG
CCCGCCTTGAAAGGAAAAGAAAACGTCC back to topCoding sequence (CDS) from alignment at CM002456.1:1287536..1289513- >rna1140 ID=rna1140|Name=rna1140|organism=Nannochloropsis gaditana|type=CDS|length=2610bp|location=Sequence derived from alignment at CM002456.1:1287536..1289513- (Nannochloropsis gaditana)
CAATAATGCTTCCCGCACCGAGTCCGCAAAAGATTCCCGTGTTATTGACC
GTCGCATTAAATCGGCATGGAGTCTGCACCCACACCAAGTGATAATAGGA
AATGAGACTGATTTTGCAGGAAAACTCGCGAAAGCCACAGATGTTGTACT
AGTGGGGGCACACAAATTTTTCAGTGAGGCGTCGAAAGAGACAGGCGATA
TCGAGGAGGGAGGCTGTGGAGGAGGGGAAAATTTTGGGAGAAGGAGATTT
AAGTAGACGACAAGACTGTGACCCGAAGAGCACCCAGCAAGATCTACCGT
GTCGTCGTGTCGGGCGGGCCATGTTCTGGCAAAACCTCGTCGCTTACTCA
CCTCCGTGACGCGTGCATGCATGCAGGATATGAAGTGTTAGTGGTCCCGG
AGGTTCCCACGCTACTCATGCAAGGGGGAGCTCTTTACCCCGGGCTGGAT
GGTGGGCCTCGCCTTGTTGCGTTCGAAGTTGCGCTTATTCAATTGCAAAT
CCAAATGGAGGAGTCCTTCGCAATGATAGCGCGTTCGACGGGTCAACCTA
CTGTCATCCTGCATGACAGAGGAAGTGTAGATGTAGCGGCTTACTTAATG
CCGTCGGACTGGCTAGCTGTCCTTTCGGCCTTGGGAGGACTCAGTACCTT
AGACTTGGCGTCGCGGTACCATCAAGTTGTTCATCTTGTGACGGCAGCAG
ACGGAGCGCCTTCTTTTTACACCCTCAGATGGGATTGCTGGAACGCTACC
ATGCCTCGCCTCATCGACAAAAAATCAACAACGTTCTGATGGTGGCTGGG
TTCCTATCTCTCTCCGTCCCTTTGCTTGCAGAAGGCGTGCAATTCATTCT
CCGCTTCCGTCGCCGCACTGCAATAATGCTTCCCGCACCGAGTCCGCAAA
AGATTCCCGTGTTATTGACCGTCGCATTAAATCGGCATGGAGTCTGCACC
CACACCAAGTGATAATAGGAAATGAGACTGATTTTGCAGGAAAACTCGCG
AAAGCCACAGATGTTGTACTAGTGGGGGCACACAAATTTTTCAGTGAGGC
GTCGAAAGAGACAGGCGATATCGAGGAGGGAGGCTGTGGAGGAGGGGAAA
ATTTTGGGAGAAGGAGATTTAAGTAGACGACAAGACTGTGACCCGAAGAG
CACCCAGCAAGATCTACCGTGTCGTCGTGTCGGGCGGGCCATGTTCTGGC
AAAACCTCGTCGCTTACTCACCTCCGTGACGCGTGCATGCATGCAGGATA
TGAAGTGTTAGTGGTCCCGGAGGTTCCCACGCTACTCATGCAAGGGGGAG
CTCTTTACCCCGGGCTGGATGGTGGGCCTCGCCTTGTTGCGTTCGAAGTT
GCGCTTATTCAATTGCAAATCCAAATGGAGGAGTCCTTCGCAATGATAGC
GCGTTCGACGGGTCAACCTACTGTCATCCTGCATGACAGAGGAAGTGTAG
ATGTAGCGGCTTACTTAATGCCGTCGGACTGGCTAGCTGTCCTTTCGGCC
TTGGGAGGACTCAGTACCTTAGACTTGGCGTCGCGGTACCATCAAGTTGT
TCATCTTGTGACGGCAGCAGACGGAGCGCCTTCTTTTTACACCCTCAGAT
GGGATTGCTGGAACGCTACCATGCCTCGCCTCATCGACAAAAAATCAACA
ACGTTCTGATGGTGGCTGGGTTCCTATCTCTCTCCGTCCCTTTGCTTGCA
GAAGGCGTGCAATTCATTCTCCGCTTCCGTCGCCGCACTGCAATAATGCT
TCCCGCACCGAGTCCGCAAAAGATTCCCGTGTTATTGACCGTCGCATTAA
ATCGGCATGGAGTCTGCACCCACACCAAGTGATAATAGGAAATGAGACTG
ATTTTGCAGGAAAACTCGCGAAAGCCACAGATGTTGTACTAGTGGGGGCA
CACAAATTTTTCAGTGAGGCGTCGAAAGAGACAGGCGATATCGAGGAGGG
AGGCTGTGGAGGAGGGGAAAATTTTGGGAGAAGGAGATTTAAGTAGACGA
CAAGACTGTGACCCGAAGAGCACCCAGCAAGATCTACCGTGTCGTCGTGT
CGGGCGGGCCATGTTCTGGCAAAACCTCGTCGCTTACTCACCTCCGTGAC
GCGTGCATGCATGCAGGATATGAAGTGTTAGTGGTCCCGGAGGTTCCCAC
GCTACTCATGCAAGGGGGAGCTCTTTACCCCGGGCTGGATGGTGGGCCTC
GCCTTGTTGCGTTCGAAGTTGCGCTTATTCAATTGCAAATCCAAATGGAG
GAGTCCTTCGCAATGATAGCGCGTTCGACGGGTCAACCTACTGTCATCCT
GCATGACAGAGGAAGTGTAGATGTAGCGGCTTACTTAATGCCGTCGGACT
GGCTAGCTGTCCTTTCGGCCTTGGGAGGACTCAGTACCTTAGACTTGGCG
TCGCGGTACCATCAAGTTGTTCATCTTGTGACGGCAGCAGACGGAGCGCC
TTCTTTTTACACCCTCAGATGGGATTGCTGGAACGCTACCATGCCTCGCC
TCATCGACAAAAAATCAACAACGTTCTGATGGTGGCTGGGTTCCTATCTC
TCTCCGTCCCTTTGCTTGCAGAAGGCGTGCAATTCATTCTCCGCTTCCGT
CGCCGCACTG back to top
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