EWM29553.1, cds1139 (CDS) Nannochloropsis gaditana
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Overview
Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Analyses
This CDS is derived from or has results from the following analyses
Annotated Terms
The following terms have been associated with this CDS:
Homology
BLAST of EWM29553.1 vs. NCBI_GenBank
Match: gi|585112124|gb|EWM29553.1| (hypothetical protein Naga_100006g27 [Nannochloropsis gaditana]) HSP 1 Score: 594.349 bits (1531), Expect = 0.000e+0 Identity = 289/289 (100.00%), Postives = 289/289 (100.00%), Query Frame = 0
Query: 1 MGLLERYHASPHRQKINNVLMVAGFLSLSVPLLAEGVQFILRFRRRTDDKTVTRRAPSKIYRVVVSGGPCSGKTSSLTHLRDACMHAGYEVLVVPEVPTLLMQGGALYPGLDGGPRLVAFEVALIQLQIQMEESFAMIARSTGQPTVILHDRGSVDVAAYLMPSDWLAVLSALGGLSTLDLASRYHQVVHLVTAADGAPSFYTLSNNASRTESAKDSRVIDRRIKSAWSLHPHQVIIGNETDFAGKLAKATDVVLVGAHKFFSEASKETGDIEEGGCGGGENFGRRRFK 289
MGLLERYHASPHRQKINNVLMVAGFLSLSVPLLAEGVQFILRFRRRTDDKTVTRRAPSKIYRVVVSGGPCSGKTSSLTHLRDACMHAGYEVLVVPEVPTLLMQGGALYPGLDGGPRLVAFEVALIQLQIQMEESFAMIARSTGQPTVILHDRGSVDVAAYLMPSDWLAVLSALGGLSTLDLASRYHQVVHLVTAADGAPSFYTLSNNASRTESAKDSRVIDRRIKSAWSLHPHQVIIGNETDFAGKLAKATDVVLVGAHKFFSEASKETGDIEEGGCGGGENFGRRRFK
Sbjct: 1 MGLLERYHASPHRQKINNVLMVAGFLSLSVPLLAEGVQFILRFRRRTDDKTVTRRAPSKIYRVVVSGGPCSGKTSSLTHLRDACMHAGYEVLVVPEVPTLLMQGGALYPGLDGGPRLVAFEVALIQLQIQMEESFAMIARSTGQPTVILHDRGSVDVAAYLMPSDWLAVLSALGGLSTLDLASRYHQVVHLVTAADGAPSFYTLSNNASRTESAKDSRVIDRRIKSAWSLHPHQVIIGNETDFAGKLAKATDVVLVGAHKFFSEASKETGDIEEGGCGGGENFGRRRFK 289
BLAST of EWM29553.1 vs. NCBI_GenBank
Match: gi|551541635|ref|XP_005759087.1| (hypothetical protein EMIHUDRAFT_249770 [Emiliania huxleyi CCMP1516] >gi|485607045|gb|EOD06658.1| hypothetical protein EMIHUDRAFT_249770 [Emiliania huxleyi CCMP1516]) HSP 1 Score: 181.03 bits (458), Expect = 5.387e-52 Identity = 96/201 (47.76%), Postives = 130/201 (64.68%), Query Frame = 0
Query: 60 IYRVVVSGGPCSGKTSSLTHLRDACMHAGYEVLVVPEVPTLLMQGGALYPGLDGGPRLVAFEVALIQLQIQMEESFAMIARSTG-------QPTVILHDRGSVDVAAYLMPSDWLAVLSALGGLSTLDLASRYHQVVHLVTAADGAPSFYTLSNNASRTESAKDSRVIDRRIKSAWSLHPHQVIIGNETDFAGKLAKATDV 253
+ R+V++GGPC GK SSL H A AG++VL VPEVPT+++ GG +PG GG +LVAFE AL+Q Q Q+E SF +A STG +P+V++ DRG +DVAAY+ W VL GLS L RY V+HLVTAADGA S Y R SAK+++ +D IK A++LHP+ ++ N TDFAG+L + +D+
Sbjct: 88 VTRIVLTGGPCGGKHSSLKHFTGALTAAGFDVLTVPEVPTIMLNGGCQFPGQQGGQKLVAFETALVQAQRQLERSFVKVAASTGNALCRARRPSVVVFDRGILDVAAYVPRVIWRKVLFE-NGLSEEQLCHRYDLVLHLVTAADGAESHYKTDG---RHHSAKEAKALDAAIKEAYALHPNFQVVDNSTDFAGELPQESDI 284
BLAST of EWM29553.1 vs. NCBI_GenBank
Match: gi|470397452|ref|XP_004335236.1| (hypothetical protein ACA1_100600 [Acanthamoeba castellanii str. Neff] >gi|440791991|gb|ELR13223.1| hypothetical protein ACA1_100600 [Acanthamoeba castellanii str. Neff]) HSP 1 Score: 169.474 bits (428), Expect = 2.698e-47 Identity = 92/219 (42.01%), Postives = 132/219 (60.27%), Query Frame = 0
Query: 58 SKIYRVVVSGGPCSGKTSSLTHLRDACMHAGYEVLVVPEVPTLLMQGGALYPGLDGGPRLVAFEVALIQLQIQMEESFAMIARSTGQPTVILHDRGSVDVAAYLMPSDWLAVLSALGGLSTLDLASRYHQVVHLVTAADGAPSFYTLSNNASRTESAKDSRVIDRRIKSAWSLHPHQVIIGNETDFAGKLAKAT---DVVLVGAHKFFSEASKETGDIE 273
S++Y VV++GGPC GK+++L L GYEV VPE+PTL+ G +L+AFE ++ QIQ+EES IA + +PTVIL DR ++D++AYL S W +L L ++ L RY VVHLVTAA+GA S+YT +NNA+RTE + +R +D ++K AW H + N TDF GK+ + D VL HK + +KET +++
Sbjct: 92 SQVYTVVLTGGPCGGKSTALATLTKHLRAQGYEVYSVPEIPTLVFTAGVPTISSMNEEQLLAFEKQILTTQIQLEESMKKIASAMDKPTVILLDRAALDISAYLPYSFWKKLLQDLD-ITEKQLRERYTAVVHLVTAANGAESYYTTANNAARTEGIEQARELDDKVKHAWIAHTRTFVADNTTDFPGKMQRVCSFLDDVLTSQHK--AAPTKETPEVK 307
BLAST of EWM29553.1 vs. NCBI_GenBank
Match: gi|954194601|gb|KRX07331.1| (P-loop containing nucleoside triphosphate hydrolase [Pseudocohnilembus persalinus]) HSP 1 Score: 171.014 bits (432), Expect = 4.008e-47 Identity = 97/252 (38.49%), Postives = 141/252 (55.95%), Query Frame = 0
Query: 60 IYRVVVSGGPCSGKTSSLTHLRDACMHAGYEVLVVPEVPTLLMQGGALYPGLDGG---PRLVAFEVALIQLQIQMEESFAMIARSTGQPTVILHDRGSVDVAAYLMPSDWLAVLSALGGLSTLDLASRYHQVVHLVTAADGAPSFYTLSNNASRTESAKDSRVIDRRIKSAWSLHPHQVIIGNETD-FAGKLAKATDVV-----LVGAHKFF-----------SEASKETGDIEEG---GCGGGEN-FGRRR 287
IYR+ ++GGPC+GKT++L L+D G++V VVPEVPTL M+GG + + GG ++ F+ L++ Q+ +E+ F +A G+P+VIL+DRG +D AY+ W AVL S RY V+H+VTAADGA FYTL NNA+R E A +R++D+ +++AW+ HPH + I N D F K+ V L A F S+ +T D+EE G EN + R+R
Sbjct: 8 IYRICLTGGPCAGKTTALNQLKDHLSQKGFKVFVVPEVPTLTMEGGGMI--VMGGLSQEKICQFQGLLMKAQMDLEDYFYNLAVLAGKPSVILYDRGVMDPKAYMDEPTWQAVLDLYNYNSVYLRDKRYQVVLHMVTAADGAEKFYTLENNAARYEDAPTARIVDKNLQNAWAGHPHHIFIDNSGDGFEAKIKNTIHAVEKYIGLANAKSFQKKFTVKSVNIPSDQKYQTFDVEESYVKPTDGAENQYLRKR 257
BLAST of EWM29553.1 vs. NCBI_GenBank
Match: gi|551548222|ref|XP_005761754.1| (hypothetical protein EMIHUDRAFT_216731 [Emiliania huxleyi CCMP1516] >gi|551621328|ref|XP_005791125.1| hypothetical protein EMIHUDRAFT_251702 [Emiliania huxleyi CCMP1516] >gi|485610630|gb|EOD09325.1| hypothetical protein EMIHUDRAFT_216731 [Emiliania huxleyi CCMP1516] >gi|485644815|gb|EOD38696.1| hypothetical protein EMIHUDRAFT_251702 [Emiliania huxleyi CCMP1516]) HSP 1 Score: 163.696 bits (413), Expect = 1.832e-45 Identity = 98/270 (36.30%), Postives = 149/270 (55.19%), Query Frame = 0
Query: 2 GLLERYH-ASPHRQKINNVLMVAGFLSLSVPLLAEGVQFILRFRRRTDDKTVTRRAPSKIYRVVVSGGPCSGKTSSLTHLRDACMHAGYEVLVVPEVPTLLMQGG---ALYPGLDGGPRLVAFEVALIQLQIQMEESFAMIARSTGQPTVILHDRGSVDVAAYLMPSDWLAVLSALGGLSTLDLASRYHQVVHLVTAADGAPSFYTLSNNAS-------RTESAKDSRVIDRRIKSAWSLHPHQVIIGNETDFAGKLAKATDVVLVGAHK 260
G YH + + + ++VA L+ S LLA R ++T RAP + + ++GGPC+GKTS+LT L + AG+ ++V E+ TL+ GG A+ P L AF+ +L++LQ+Q+E++ A + +T PT+++ DRG++D +Y+ P W AVL A+G L SRY V+HLVTAADGAP Y N R ES +++ V DRR ++AW+ HP +VII N F+ K A +L+ AH+
Sbjct: 12 GFCYPYHRVATAEESYHLAVVVALCLTFSAALLAP------RLVAAALHSSLTARAPQNLVTIALTGGPCAGKTSALTALEASAKSAGFHLMVTTEIATLMRAGGCDEAITPAL-------AFQTSLVRLQVQLEDALAAVGAATDLPTILITDRGAMDAKSYMSPHTWSAVLEAIGATEE-SLLSRYDGVIHLVTAADGAPQSYKWGNVTDDSGHWVYRKESPEEAIVTDRRTQAAWAAHPRRVIIPNAGSFSNKTKHAAMAMLMIAHE 267
BLAST of EWM29553.1 vs. NCBI_GenBank
Match: gi|922863385|gb|KOO30836.1| (aaa domain protein, partial [Chrysochromulina sp. CCMP291]) HSP 1 Score: 166.392 bits (420), Expect = 3.475e-45 Identity = 97/233 (41.63%), Postives = 139/233 (59.66%), Query Frame = 0
Query: 53 TRRAPSKIYRVVVSGGPCSGKTSSLTHLRDACMHAGYEVLVVPEVPTLLMQGGALYPGLDGGPRLVAFEVALIQLQIQMEESFAMIARSTGQPTVILHDRGSVDVAAYLMPSDWLAVLSALGGLSTLDLASR--------YHQVVHLVTAADGAPSFYTLSNNAS----RTESAKDSRVIDRR-------IKSA----------WS-LHPHQVIIGNETDFAGKLAKATDVVL 255
+RRA ++ + VV +GGPC GK+S+L L A G++VL+VPEVPT+L GG +YPG+ GG +L+ +E +++LQ+QMEESF IA STGQPTV++ +RG +D+ AYL W VL L+ ++A+R Y V+HL TAA+GA FY+ N RTE+A+++R +D R IK A W +H V+I N TDF K+ +A+ VL
Sbjct: 138 SRRAAARCFTVVFTGGPCGGKSSTLGPLASALRAEGWQVLLVPEVPTILKTGGCIYPGVAGGSKLLEYEKGVLELQLQMEESFLRIAASTGQPTVLIMERGLLDLPAYLPTKQWRQVLRD-NALTETEIAARYDLVLQIPYDLVLHLKTAAEGAEPFYSTLNTTPTDGVRTETAEEARELDARSGGNQGVIKEARELDARIFLIWKRVHRSVVVIDNSTDFGQKVTRASGAVL 369
BLAST of EWM29553.1 vs. NCBI_GenBank
Match: gi|640652084|ref|WP_025078544.1| (ATPase AAA [Prevotella fusca] >gi|913018952|gb|AKU69905.1| AAA family ATPase [Prevotella fusca JCM 17724]) HSP 1 Score: 164.851 bits (416), Expect = 5.863e-45 Identity = 79/192 (41.15%), Postives = 123/192 (64.06%), Query Frame = 0
Query: 62 RVVVSGGPCSGKTSSLTHLRDACMHAGYEVLVVPEVPTLLMQGGALYPGLDGGPRLVAF----EVALIQLQIQMEESFAMIARSTGQPTVILHDRGSVDVAAYLMPSDWLAVLSALGGLSTLDLASRYHQVVHLVTAADGAPSFYTLSNNASRTESAKDSRVIDRRIKSAWSLHPHQVIIGNETDFAGKLAK 249
R+V++GGPC+GKT++L + + GY+V ++PEVPTL Q G Y L P AF E A +++Q+ +E+ F +A + +PT+I+ DRG++D++AY+ P W + + G S+ DL +RY V+HLV+AADGA FYT +NNA RTE + +R +D+++ AWS HPH +I N +F K+ +
Sbjct: 3 RIVLTGGPCAGKTTALVKIIEHFSSLGYKVFIIPEVPTLFSQAGMDY--LTDNP---AFFYEGEKATLEMQLALEDKFTCMAETIDKPTIIVCDRGTMDISAYMKPEMWKEITTG-AGTSSEDLRARYDAVLHLVSAADGAEQFYTTANNAERTEGLELARELDKKVIQAWSEHPHLRVINNHENFDTKINR 188
BLAST of EWM29553.1 vs. NCBI_GenBank
Match: gi|545435218|ref|WP_021673152.1| (hypothetical protein [Prevotella sp. F0091] >gi|543967135|gb|ERJ73532.1| hypothetical protein HMPREF9148_02611 [Prevotella sp. F0091]) HSP 1 Score: 164.081 bits (414), Expect = 1.288e-44 Identity = 75/188 (39.89%), Postives = 121/188 (64.36%), Query Frame = 0
Query: 62 RVVVSGGPCSGKTSSLTHLRDACMHAGYEVLVVPEVPTLLMQGGALYPGLDGGPRLVAFEVALIQLQIQMEESFAMIARSTGQPTVILHDRGSVDVAAYLMPSDWLAVLSALGGLSTLDLASRYHQVVHLVTAADGAPSFYTLSNNASRTESAKDSRVIDRRIKSAWSLHPHQVIIGNETDFAGKLAK 249
R+V++GGPC+GKT++L + + GY+V ++PEVPTL Q G Y D E A +++Q+ +E+ F +A + +PT+I+ DRG++D++AY+ P W + + +G S+ +L +RY V+HLV+AADGA FYT +NNA RTE + +R +D+++ AWS HPH +I N +F K+ +
Sbjct: 3 RIVLTGGPCAGKTTALVKIIEHFSSLGYKVFIIPEVPTLFTQAGMDYLT-DNAAFFYEGEKATLEMQLALEDKFTCMAETIDKPTIIVCDRGTMDISAYMKPEMWQEITAGVGT-SSEELRARYDAVLHLVSAADGAEQFYTTANNAHRTEGLELARELDKKVIQAWSEHPHLRVINNHENFDTKIKR 188
BLAST of EWM29553.1 vs. NCBI_GenBank
Match: gi|492916465|ref|WP_006044811.1| (ATPase AAA [Prevotella pallens] >gi|339613965|gb|EGQ18678.1| hypothetical protein HMPREF9144_1123 [Prevotella pallens ATCC 700821]) HSP 1 Score: 163.696 bits (413), Expect = 1.970e-44 Identity = 75/189 (39.68%), Postives = 119/189 (62.96%), Query Frame = 0
Query: 62 RVVVSGGPCSGKTSSLTHLRDACMHAGYEVLVVPEVPTLLMQGGALYPGLDGGPRLVAFEVALIQLQIQMEESFAMIARSTGQPTVILHDRGSVDVAAYLMPSDWLAVLSALGGLSTLDLASRYHQVVHLVTAADGAPSFYTLSNNASRTESAKDSRVIDRRIKSAWSLHPHQVIIGNETDFAGKLAKA 250
++V++GGPC+GKT++L + + GY+V ++PE+PTL +Q G Y D E A +++QI +E+ F +A+S QP +I+ DRG++D++AY+ P W ++S ++ L SRY V+HLV+AADGA FYT + N RTE + +R++D+++ AWS HPH +I N DF KL +
Sbjct: 3 KIVLTGGPCAGKTTALVKIMEHFSSIGYKVFIIPELPTLFLQAGMDYLT-DNKDLFYEGEKATLEMQIALEDKFLQMAKSVKQPVLIVCDRGTMDISAYMNPVLWNQIISD-AKMNNEMLRSRYDAVLHLVSAADGAEQFYTTATNNKRTEGIELARILDKKVIQAWSEHPHLRVINNHEDFETKLERV 189
BLAST of EWM29553.1 vs. NCBI_GenBank
Match: gi|738979056|ref|WP_036862313.1| (ATPase AAA [Prevotella melaninogenica] >gi|690810173|gb|KGF54526.1| ATPase AAA [Prevotella melaninogenica DNF00666]) HSP 1 Score: 163.31 bits (412), Expect = 2.462e-44 Identity = 75/188 (39.89%), Postives = 120/188 (63.83%), Query Frame = 0
Query: 62 RVVVSGGPCSGKTSSLTHLRDACMHAGYEVLVVPEVPTLLMQGGALYPGLDGGPRLVAFEVALIQLQIQMEESFAMIARSTGQPTVILHDRGSVDVAAYLMPSDWLAVLSALGGLSTLDLASRYHQVVHLVTAADGAPSFYTLSNNASRTESAKDSRVIDRRIKSAWSLHPHQVIIGNETDFAGKLAK 249
R+V++GGPC+GKT++L + + GY+V ++PEVPTL Q G Y D E A +++Q+ +E+ F +A + +PT+I+ DRG++D++AY+ P W + + +G S +L +RY V+HLV+AADGA FYT +NNA R E + +RV+D+++ AWS HPH +I N +F K+ +
Sbjct: 3 RIVLTGGPCAGKTTALVKIIEHFSSLGYKVFIIPEVPTLFSQAGMDYLT-DNAAFFYEGEKATLEVQLALEDKFTRMAETIDKPTIIVCDRGTMDISAYMKPEMWKEITAGVGTTSE-ELRARYDAVLHLVSAADGAEQFYTTANNAERKEGLELARVLDKKVIQAWSEHPHLRVINNHENFDTKINR 188 The following BLAST results are available for this feature:
BLAST of EWM29553.1 vs. NCBI_GenBank
Analysis Date: 2020-04-07 (BLAST analysis for N. gaditana B-31) Total hits: 10
Relationships
This CDS is a part of the following mRNA feature(s):
Sequences
Synonyms
Publications
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