EWM29553.1, cds1139 (CDS) Nannochloropsis gaditana

Overview
NameEWM29553.1
Unique Namecds1139
TypeCDS
OrganismNannochloropsis gaditana (N. gaditana B-31)
Alignment locationCM002456.1:1289168..1289309 -
Alignment locationCM002456.1:1288571..1289042 -
Alignment locationCM002456.1:1287976..1288231 -

Link to JBrowse

Properties
Property NameValue
Protein idEWM29553.1
Producthypothetical protein
Orig transcript idgnl|cribi|Naga_100006g27.8642.mrna
GbkeyCDS
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
CM002456.1supercontigCM002456.1:1289168..1289309 -
CM002456.1supercontigCM002456.1:1288571..1289042 -
CM002456.1supercontigCM002456.1:1287976..1288231 -
Analyses
This CDS is derived from or has results from the following analyses
Analysis NameDate Performed
GO annotation for N. gaditana B312020-04-08
BLAST analysis for N. gaditana B-312020-04-07
InterPro analysis for N. gaditana B-312020-04-06
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
The following terms have been associated with this CDS:
Vocabulary: Cellular Component
TermDefinition
GO:0016020membrane
Vocabulary: INTERPRO
TermDefinition
IPR027417P-loop_NTPase
Homology
BLAST of EWM29553.1 vs. NCBI_GenBank
Match: gi|585112124|gb|EWM29553.1| (hypothetical protein Naga_100006g27 [Nannochloropsis gaditana])

HSP 1 Score: 594.349 bits (1531), Expect = 0.000e+0
Identity = 289/289 (100.00%), Postives = 289/289 (100.00%), Query Frame = 0
Query:    1 MGLLERYHASPHRQKINNVLMVAGFLSLSVPLLAEGVQFILRFRRRTDDKTVTRRAPSKIYRVVVSGGPCSGKTSSLTHLRDACMHAGYEVLVVPEVPTLLMQGGALYPGLDGGPRLVAFEVALIQLQIQMEESFAMIARSTGQPTVILHDRGSVDVAAYLMPSDWLAVLSALGGLSTLDLASRYHQVVHLVTAADGAPSFYTLSNNASRTESAKDSRVIDRRIKSAWSLHPHQVIIGNETDFAGKLAKATDVVLVGAHKFFSEASKETGDIEEGGCGGGENFGRRRFK 289
            MGLLERYHASPHRQKINNVLMVAGFLSLSVPLLAEGVQFILRFRRRTDDKTVTRRAPSKIYRVVVSGGPCSGKTSSLTHLRDACMHAGYEVLVVPEVPTLLMQGGALYPGLDGGPRLVAFEVALIQLQIQMEESFAMIARSTGQPTVILHDRGSVDVAAYLMPSDWLAVLSALGGLSTLDLASRYHQVVHLVTAADGAPSFYTLSNNASRTESAKDSRVIDRRIKSAWSLHPHQVIIGNETDFAGKLAKATDVVLVGAHKFFSEASKETGDIEEGGCGGGENFGRRRFK
Sbjct:    1 MGLLERYHASPHRQKINNVLMVAGFLSLSVPLLAEGVQFILRFRRRTDDKTVTRRAPSKIYRVVVSGGPCSGKTSSLTHLRDACMHAGYEVLVVPEVPTLLMQGGALYPGLDGGPRLVAFEVALIQLQIQMEESFAMIARSTGQPTVILHDRGSVDVAAYLMPSDWLAVLSALGGLSTLDLASRYHQVVHLVTAADGAPSFYTLSNNASRTESAKDSRVIDRRIKSAWSLHPHQVIIGNETDFAGKLAKATDVVLVGAHKFFSEASKETGDIEEGGCGGGENFGRRRFK 289          
BLAST of EWM29553.1 vs. NCBI_GenBank
Match: gi|551541635|ref|XP_005759087.1| (hypothetical protein EMIHUDRAFT_249770 [Emiliania huxleyi CCMP1516] >gi|485607045|gb|EOD06658.1| hypothetical protein EMIHUDRAFT_249770 [Emiliania huxleyi CCMP1516])

HSP 1 Score: 181.03 bits (458), Expect = 5.387e-52
Identity = 96/201 (47.76%), Postives = 130/201 (64.68%), Query Frame = 0
Query:   60 IYRVVVSGGPCSGKTSSLTHLRDACMHAGYEVLVVPEVPTLLMQGGALYPGLDGGPRLVAFEVALIQLQIQMEESFAMIARSTG-------QPTVILHDRGSVDVAAYLMPSDWLAVLSALGGLSTLDLASRYHQVVHLVTAADGAPSFYTLSNNASRTESAKDSRVIDRRIKSAWSLHPHQVIIGNETDFAGKLAKATDV 253
            + R+V++GGPC GK SSL H   A   AG++VL VPEVPT+++ GG  +PG  GG +LVAFE AL+Q Q Q+E SF  +A STG       +P+V++ DRG +DVAAY+    W  VL    GLS   L  RY  V+HLVTAADGA S Y       R  SAK+++ +D  IK A++LHP+  ++ N TDFAG+L + +D+
Sbjct:   88 VTRIVLTGGPCGGKHSSLKHFTGALTAAGFDVLTVPEVPTIMLNGGCQFPGQQGGQKLVAFETALVQAQRQLERSFVKVAASTGNALCRARRPSVVVFDRGILDVAAYVPRVIWRKVLFE-NGLSEEQLCHRYDLVLHLVTAADGAESHYKTDG---RHHSAKEAKALDAAIKEAYALHPNFQVVDNSTDFAGELPQESDI 284          
BLAST of EWM29553.1 vs. NCBI_GenBank
Match: gi|470397452|ref|XP_004335236.1| (hypothetical protein ACA1_100600 [Acanthamoeba castellanii str. Neff] >gi|440791991|gb|ELR13223.1| hypothetical protein ACA1_100600 [Acanthamoeba castellanii str. Neff])

HSP 1 Score: 169.474 bits (428), Expect = 2.698e-47
Identity = 92/219 (42.01%), Postives = 132/219 (60.27%), Query Frame = 0
Query:   58 SKIYRVVVSGGPCSGKTSSLTHLRDACMHAGYEVLVVPEVPTLLMQGGALYPGLDGGPRLVAFEVALIQLQIQMEESFAMIARSTGQPTVILHDRGSVDVAAYLMPSDWLAVLSALGGLSTLDLASRYHQVVHLVTAADGAPSFYTLSNNASRTESAKDSRVIDRRIKSAWSLHPHQVIIGNETDFAGKLAKAT---DVVLVGAHKFFSEASKETGDIE 273
            S++Y VV++GGPC GK+++L  L       GYEV  VPE+PTL+   G          +L+AFE  ++  QIQ+EES   IA +  +PTVIL DR ++D++AYL  S W  +L  L  ++   L  RY  VVHLVTAA+GA S+YT +NNA+RTE  + +R +D ++K AW  H    +  N TDF GK+ +     D VL   HK  +  +KET +++
Sbjct:   92 SQVYTVVLTGGPCGGKSTALATLTKHLRAQGYEVYSVPEIPTLVFTAGVPTISSMNEEQLLAFEKQILTTQIQLEESMKKIASAMDKPTVILLDRAALDISAYLPYSFWKKLLQDLD-ITEKQLRERYTAVVHLVTAANGAESYYTTANNAARTEGIEQARELDDKVKHAWIAHTRTFVADNTTDFPGKMQRVCSFLDDVLTSQHK--AAPTKETPEVK 307          
BLAST of EWM29553.1 vs. NCBI_GenBank
Match: gi|954194601|gb|KRX07331.1| (P-loop containing nucleoside triphosphate hydrolase [Pseudocohnilembus persalinus])

HSP 1 Score: 171.014 bits (432), Expect = 4.008e-47
Identity = 97/252 (38.49%), Postives = 141/252 (55.95%), Query Frame = 0
Query:   60 IYRVVVSGGPCSGKTSSLTHLRDACMHAGYEVLVVPEVPTLLMQGGALYPGLDGG---PRLVAFEVALIQLQIQMEESFAMIARSTGQPTVILHDRGSVDVAAYLMPSDWLAVLSALGGLSTLDLASRYHQVVHLVTAADGAPSFYTLSNNASRTESAKDSRVIDRRIKSAWSLHPHQVIIGNETD-FAGKLAKATDVV-----LVGAHKFF-----------SEASKETGDIEEG---GCGGGEN-FGRRR 287
            IYR+ ++GGPC+GKT++L  L+D     G++V VVPEVPTL M+GG +   + GG    ++  F+  L++ Q+ +E+ F  +A   G+P+VIL+DRG +D  AY+    W AVL      S      RY  V+H+VTAADGA  FYTL NNA+R E A  +R++D+ +++AW+ HPH + I N  D F  K+      V     L  A  F            S+   +T D+EE       G EN + R+R
Sbjct:    8 IYRICLTGGPCAGKTTALNQLKDHLSQKGFKVFVVPEVPTLTMEGGGMI--VMGGLSQEKICQFQGLLMKAQMDLEDYFYNLAVLAGKPSVILYDRGVMDPKAYMDEPTWQAVLDLYNYNSVYLRDKRYQVVLHMVTAADGAEKFYTLENNAARYEDAPTARIVDKNLQNAWAGHPHHIFIDNSGDGFEAKIKNTIHAVEKYIGLANAKSFQKKFTVKSVNIPSDQKYQTFDVEESYVKPTDGAENQYLRKR 257          
BLAST of EWM29553.1 vs. NCBI_GenBank
Match: gi|551548222|ref|XP_005761754.1| (hypothetical protein EMIHUDRAFT_216731 [Emiliania huxleyi CCMP1516] >gi|551621328|ref|XP_005791125.1| hypothetical protein EMIHUDRAFT_251702 [Emiliania huxleyi CCMP1516] >gi|485610630|gb|EOD09325.1| hypothetical protein EMIHUDRAFT_216731 [Emiliania huxleyi CCMP1516] >gi|485644815|gb|EOD38696.1| hypothetical protein EMIHUDRAFT_251702 [Emiliania huxleyi CCMP1516])

HSP 1 Score: 163.696 bits (413), Expect = 1.832e-45
Identity = 98/270 (36.30%), Postives = 149/270 (55.19%), Query Frame = 0
Query:    2 GLLERYH-ASPHRQKINNVLMVAGFLSLSVPLLAEGVQFILRFRRRTDDKTVTRRAPSKIYRVVVSGGPCSGKTSSLTHLRDACMHAGYEVLVVPEVPTLLMQGG---ALYPGLDGGPRLVAFEVALIQLQIQMEESFAMIARSTGQPTVILHDRGSVDVAAYLMPSDWLAVLSALGGLSTLDLASRYHQVVHLVTAADGAPSFYTLSNNAS-------RTESAKDSRVIDRRIKSAWSLHPHQVIIGNETDFAGKLAKATDVVLVGAHK 260
            G    YH  +   +  +  ++VA  L+ S  LLA       R        ++T RAP  +  + ++GGPC+GKTS+LT L  +   AG+ ++V  E+ TL+  GG   A+ P L       AF+ +L++LQ+Q+E++ A +  +T  PT+++ DRG++D  +Y+ P  W AVL A+G      L SRY  V+HLVTAADGAP  Y   N          R ES +++ V DRR ++AW+ HP +VII N   F+ K   A   +L+ AH+
Sbjct:   12 GFCYPYHRVATAEESYHLAVVVALCLTFSAALLAP------RLVAAALHSSLTARAPQNLVTIALTGGPCAGKTSALTALEASAKSAGFHLMVTTEIATLMRAGGCDEAITPAL-------AFQTSLVRLQVQLEDALAAVGAATDLPTILITDRGAMDAKSYMSPHTWSAVLEAIGATEE-SLLSRYDGVIHLVTAADGAPQSYKWGNVTDDSGHWVYRKESPEEAIVTDRRTQAAWAAHPRRVIIPNAGSFSNKTKHAAMAMLMIAHE 267          
BLAST of EWM29553.1 vs. NCBI_GenBank
Match: gi|922863385|gb|KOO30836.1| (aaa domain protein, partial [Chrysochromulina sp. CCMP291])

HSP 1 Score: 166.392 bits (420), Expect = 3.475e-45
Identity = 97/233 (41.63%), Postives = 139/233 (59.66%), Query Frame = 0
Query:   53 TRRAPSKIYRVVVSGGPCSGKTSSLTHLRDACMHAGYEVLVVPEVPTLLMQGGALYPGLDGGPRLVAFEVALIQLQIQMEESFAMIARSTGQPTVILHDRGSVDVAAYLMPSDWLAVLSALGGLSTLDLASR--------YHQVVHLVTAADGAPSFYTLSNNAS----RTESAKDSRVIDRR-------IKSA----------WS-LHPHQVIIGNETDFAGKLAKATDVVL 255
            +RRA ++ + VV +GGPC GK+S+L  L  A    G++VL+VPEVPT+L  GG +YPG+ GG +L+ +E  +++LQ+QMEESF  IA STGQPTV++ +RG +D+ AYL    W  VL     L+  ++A+R        Y  V+HL TAA+GA  FY+  N       RTE+A+++R +D R       IK A          W  +H   V+I N TDF  K+ +A+  VL
Sbjct:  138 SRRAAARCFTVVFTGGPCGGKSSTLGPLASALRAEGWQVLLVPEVPTILKTGGCIYPGVAGGSKLLEYEKGVLELQLQMEESFLRIAASTGQPTVLIMERGLLDLPAYLPTKQWRQVLRD-NALTETEIAARYDLVLQIPYDLVLHLKTAAEGAEPFYSTLNTTPTDGVRTETAEEARELDARSGGNQGVIKEARELDARIFLIWKRVHRSVVVIDNSTDFGQKVTRASGAVL 369          
BLAST of EWM29553.1 vs. NCBI_GenBank
Match: gi|640652084|ref|WP_025078544.1| (ATPase AAA [Prevotella fusca] >gi|913018952|gb|AKU69905.1| AAA family ATPase [Prevotella fusca JCM 17724])

HSP 1 Score: 164.851 bits (416), Expect = 5.863e-45
Identity = 79/192 (41.15%), Postives = 123/192 (64.06%), Query Frame = 0
Query:   62 RVVVSGGPCSGKTSSLTHLRDACMHAGYEVLVVPEVPTLLMQGGALYPGLDGGPRLVAF----EVALIQLQIQMEESFAMIARSTGQPTVILHDRGSVDVAAYLMPSDWLAVLSALGGLSTLDLASRYHQVVHLVTAADGAPSFYTLSNNASRTESAKDSRVIDRRIKSAWSLHPHQVIIGNETDFAGKLAK 249
            R+V++GGPC+GKT++L  + +     GY+V ++PEVPTL  Q G  Y  L   P   AF    E A +++Q+ +E+ F  +A +  +PT+I+ DRG++D++AY+ P  W  + +   G S+ DL +RY  V+HLV+AADGA  FYT +NNA RTE  + +R +D+++  AWS HPH  +I N  +F  K+ +
Sbjct:    3 RIVLTGGPCAGKTTALVKIIEHFSSLGYKVFIIPEVPTLFSQAGMDY--LTDNP---AFFYEGEKATLEMQLALEDKFTCMAETIDKPTIIVCDRGTMDISAYMKPEMWKEITTG-AGTSSEDLRARYDAVLHLVSAADGAEQFYTTANNAERTEGLELARELDKKVIQAWSEHPHLRVINNHENFDTKINR 188          
BLAST of EWM29553.1 vs. NCBI_GenBank
Match: gi|545435218|ref|WP_021673152.1| (hypothetical protein [Prevotella sp. F0091] >gi|543967135|gb|ERJ73532.1| hypothetical protein HMPREF9148_02611 [Prevotella sp. F0091])

HSP 1 Score: 164.081 bits (414), Expect = 1.288e-44
Identity = 75/188 (39.89%), Postives = 121/188 (64.36%), Query Frame = 0
Query:   62 RVVVSGGPCSGKTSSLTHLRDACMHAGYEVLVVPEVPTLLMQGGALYPGLDGGPRLVAFEVALIQLQIQMEESFAMIARSTGQPTVILHDRGSVDVAAYLMPSDWLAVLSALGGLSTLDLASRYHQVVHLVTAADGAPSFYTLSNNASRTESAKDSRVIDRRIKSAWSLHPHQVIIGNETDFAGKLAK 249
            R+V++GGPC+GKT++L  + +     GY+V ++PEVPTL  Q G  Y   D        E A +++Q+ +E+ F  +A +  +PT+I+ DRG++D++AY+ P  W  + + +G  S+ +L +RY  V+HLV+AADGA  FYT +NNA RTE  + +R +D+++  AWS HPH  +I N  +F  K+ +
Sbjct:    3 RIVLTGGPCAGKTTALVKIIEHFSSLGYKVFIIPEVPTLFTQAGMDYLT-DNAAFFYEGEKATLEMQLALEDKFTCMAETIDKPTIIVCDRGTMDISAYMKPEMWQEITAGVGT-SSEELRARYDAVLHLVSAADGAEQFYTTANNAHRTEGLELARELDKKVIQAWSEHPHLRVINNHENFDTKIKR 188          
BLAST of EWM29553.1 vs. NCBI_GenBank
Match: gi|492916465|ref|WP_006044811.1| (ATPase AAA [Prevotella pallens] >gi|339613965|gb|EGQ18678.1| hypothetical protein HMPREF9144_1123 [Prevotella pallens ATCC 700821])

HSP 1 Score: 163.696 bits (413), Expect = 1.970e-44
Identity = 75/189 (39.68%), Postives = 119/189 (62.96%), Query Frame = 0
Query:   62 RVVVSGGPCSGKTSSLTHLRDACMHAGYEVLVVPEVPTLLMQGGALYPGLDGGPRLVAFEVALIQLQIQMEESFAMIARSTGQPTVILHDRGSVDVAAYLMPSDWLAVLSALGGLSTLDLASRYHQVVHLVTAADGAPSFYTLSNNASRTESAKDSRVIDRRIKSAWSLHPHQVIIGNETDFAGKLAKA 250
            ++V++GGPC+GKT++L  + +     GY+V ++PE+PTL +Q G  Y   D        E A +++QI +E+ F  +A+S  QP +I+ DRG++D++AY+ P  W  ++S    ++   L SRY  V+HLV+AADGA  FYT + N  RTE  + +R++D+++  AWS HPH  +I N  DF  KL + 
Sbjct:    3 KIVLTGGPCAGKTTALVKIMEHFSSIGYKVFIIPELPTLFLQAGMDYLT-DNKDLFYEGEKATLEMQIALEDKFLQMAKSVKQPVLIVCDRGTMDISAYMNPVLWNQIISD-AKMNNEMLRSRYDAVLHLVSAADGAEQFYTTATNNKRTEGIELARILDKKVIQAWSEHPHLRVINNHEDFETKLERV 189          
BLAST of EWM29553.1 vs. NCBI_GenBank
Match: gi|738979056|ref|WP_036862313.1| (ATPase AAA [Prevotella melaninogenica] >gi|690810173|gb|KGF54526.1| ATPase AAA [Prevotella melaninogenica DNF00666])

HSP 1 Score: 163.31 bits (412), Expect = 2.462e-44
Identity = 75/188 (39.89%), Postives = 120/188 (63.83%), Query Frame = 0
Query:   62 RVVVSGGPCSGKTSSLTHLRDACMHAGYEVLVVPEVPTLLMQGGALYPGLDGGPRLVAFEVALIQLQIQMEESFAMIARSTGQPTVILHDRGSVDVAAYLMPSDWLAVLSALGGLSTLDLASRYHQVVHLVTAADGAPSFYTLSNNASRTESAKDSRVIDRRIKSAWSLHPHQVIIGNETDFAGKLAK 249
            R+V++GGPC+GKT++L  + +     GY+V ++PEVPTL  Q G  Y   D        E A +++Q+ +E+ F  +A +  +PT+I+ DRG++D++AY+ P  W  + + +G  S  +L +RY  V+HLV+AADGA  FYT +NNA R E  + +RV+D+++  AWS HPH  +I N  +F  K+ +
Sbjct:    3 RIVLTGGPCAGKTTALVKIIEHFSSLGYKVFIIPEVPTLFSQAGMDYLT-DNAAFFYEGEKATLEVQLALEDKFTRMAETIDKPTIIVCDRGTMDISAYMKPEMWKEITAGVGTTSE-ELRARYDAVLHLVSAADGAEQFYTTANNAERKEGLELARVLDKKVIQAWSEHPHLRVINNHENFDTKINR 188          
The following BLAST results are available for this feature:
BLAST of EWM29553.1 vs. NCBI_GenBank
Analysis Date: 2020-04-07 (BLAST analysis for N. gaditana B-31)
Total hits: 10
Match NameE-valueIdentityDescription
gi|585112124|gb|EWM29553.1|0.000e+0100.00hypothetical protein Naga_100006g27 [Nannochlorops... [more]
gi|551541635|ref|XP_005759087.1|5.387e-5247.76hypothetical protein EMIHUDRAFT_249770 [Emiliania ... [more]
gi|470397452|ref|XP_004335236.1|2.698e-4742.01hypothetical protein ACA1_100600 [Acanthamoeba cas... [more]
gi|954194601|gb|KRX07331.1|4.008e-4738.49P-loop containing nucleoside triphosphate hydrolas... [more]
gi|551548222|ref|XP_005761754.1|1.832e-4536.30hypothetical protein EMIHUDRAFT_216731 [Emiliania ... [more]
gi|922863385|gb|KOO30836.1|3.475e-4541.63aaa domain protein, partial [Chrysochromulina sp. ... [more]
gi|640652084|ref|WP_025078544.1|5.863e-4541.15ATPase AAA [Prevotella fusca] >gi|913018952|gb|AKU... [more]
gi|545435218|ref|WP_021673152.1|1.288e-4439.89hypothetical protein [Prevotella sp. F0091] >gi|54... [more]
gi|492916465|ref|WP_006044811.1|1.970e-4439.68ATPase AAA [Prevotella pallens] >gi|339613965|gb|E... [more]
gi|738979056|ref|WP_036862313.1|2.462e-4439.89ATPase AAA [Prevotella melaninogenica] >gi|6908101... [more]
back to top
Relationships

This CDS is a part of the following mRNA feature(s):

Feature NameUnique NameSpeciesType
rna1140rna1140Nannochloropsis gaditana (N. gaditana B-31)mRNA


Sequences
Synonyms
Publications