rna1135, rna1135 (mRNA) Nannochloropsis gaditana | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	rna1135
Unique Name	rna1135
Type	mRNA
Organism	Nannochloropsis gaditana (N. gaditana B-31)
Sequence length	2232
Alignment location	CM002456.1:1275368..1278443 +

Link to JBrowse

Properties


Property Name	Value
Product	hypothetical protein
Orig transcript id	gnl\|cribi\|Naga_100006g31.8659.mrna
Orig protein id	gnl\|cribi\|Naga_100006g31.8659
Gbkey	mRNA
Note	encoded by transcript variant 2; alternatively spliced

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
CM002456.1	supercontig	CM002456.1:1275368..1278443 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. gaditana B-31	2014-02-18

Annotated Terms

Homology

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
Naga_100006g31	gene1094	Nannochloropsis gaditana (N. gaditana B-31)	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
rna1135	rna1135-protein	Nannochloropsis gaditana (N. gaditana B-31)	polypeptide

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
EWM29570.1	cds1134	Nannochloropsis gaditana (N. gaditana B-31)	CDS

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at CM002456.1:1275368..1278443+
coding sequence from alignment at CM002456.1:1275368..1278443+

mRNA sequence

>rna1135 ID=rna1135|Name=rna1135|organism=Nannochloropsis gaditana|type=mRNA|length=2232bp
CCATCACCATTGCTCCATATTTTCCTCGTCCTCCTCCTTGTCCTTCCATG
TTATCTTCGTTTCCCTTTTTTGTCCTCCTTTCACTTCATCTTCACGTACT
TGATTATATTTACGTATTGAAGCCGCACACTTTAATAAATGATGATCGAT
GTACAGATTTACCCACGATAGTATCGGCCGTCACTTGCGTGTGGCCTTTC
TGTCTACCCTGCATATTCCTTTTCCATCTCGCCGATCTTTCCACCATTGA
ATAGCGCTACGAACCTGAAGTCCACAATAAGTTCCTTTATAATGATTTTG
AAGATGATTTGTGTTCTGCCTTCCATTCATACTCTCTTCCATGCTTGTTA
TTGACCCGTAACGATGAAAAGCTTCATATCTGCCAGAATAAACTTCTAAA
ATCTCTGCCGGATATTTGACAGCTCTTAACACCATAAAATCAATCAGAAT
TTATTTCATAACGAGTGAAATGTCAAAATGGTTGCCCCTTGACAAAGCAA
ATTTATCAAACCTCATGTGGGCAGTTGCTTCATGTCCTGCCTCCCGGACA
CACAGCCATGGCCATAGACGTCGTGCATTTTTCTTTTAACGCATTTTAAA
GCAGCCAGACCGCAATTGATGGTTGCCTCTATCAGCCAAAGGGGTCGTCT
TGTTTCCCCGCGTCACTGCGTGGGAGCCTGGGATTAATTTATGCAAGGGC
AGCAGGGAGCTTGTCAATGCTCGCCCATATCACACGATGTCTCGCCTCGA
CCTCAACTTCCACTTCCTTTTGCCTTCAATTTCTTGTTCTCGTTCGACAA
TTTCTTCTCACAAATGTACAGGCGTGCGTTATTGCGTGCGCAAGGAGGCG
AATGGCAGACTTAATCATACACAGGAAGGATGACAATCAAGAGAAGTACT
TCCAAGAAGAACGACCTTCCCCTGGCATCCTGGTCCTTCTCCTTGATCGA
CCGCGCAAGAAAAATGCCATAACCGGCGCCATGTATTTGGACTTGGCCGA
TGCCATGGATAGGGCGGCAATGGACGAGTCGGTGACATGTTTGGTGCTCA
CAGGGAAAGGCGACTACTTCTCATCGGGAGCAGATTTGACGGACGAATCG
TGGACTCCCGACCCAGAGCATAAAATGGAGACGTCACCGGCGGCCATTTT
TATGAAGGCCTTATCCCATTTTCCTAAATTAGTGGTAGCTGCCGTGAATG
GCCCCGCGATCGGGATCGCCGTCACCCTTCTCTGCCACGTGGACCTTGCA
TACGCAGCCCCTCACGCCACGTTCTGGACGCCCTTCTTACGGATGGCCAT
CGTCCCGGAGTACGCCTCCTCCGCCCTTTTCCCTCTCACCATGGGCCGTA
GCAAGGCGAGCGAGCTCCTCTTCTTGGGCAAGAAGTTCACCGCGACGGAG
GCACAAGCCTCGCACCTCATCAGCGAAATCATCCCCACGGACCGTTTGCT
TACGGAGGTCCTATTGCGGCTGGAGGACATGCTGGCTAAACCGTTGGTTC
AAAAATCCGTTGTCGCTTTCAAGGCCCTCATGAAGAGCCAACGGTTGCGG
GAGGTGGACGACGTCATCAAAGCTGAGTTTCGTGCCTTTGACGATCGGAT
CGCGGAGGGGGACGTGGCTTTCGCCATCGGTCAGCTCTTACAAAGCCGGC
TATAACACATCGTGAGGTTCCCCCATCTTGTCTGCCCTTCCCTCCGCCCA
GGCATGCTGTGCCTGTGTGGCGCGCCCGCTCCCTTGTCCGTGCTGGACTT
TTGAGGCCATGACCGAAAAGGCCGAAGAGGAGGAGTGAGAAGGGAGTGAG
GTCATTTGCGTTATGTACATAAGATCCGTGGGTGGCGGTGTATGACGACA
AAAAACAGACGGCAACGCCGGCAGAAGCGTCGACTTAACTCGGCGCACGC
CCCAAGGGCGAAGGCCGGGGAAGGGACTGTGCCCTCCCAAAGAACAAGGA
CAGGCGGAAGGCTGTTCAAAGGCCCTGCCTGTTCGAGGGCCGCACGGCTT
CACCTATCCGGCCCGGCGGAGGGACACGCTTTCCATGTCAAGTTTTCTTT
TTGGTACCCTACGGCTGCCACCAGATTCCCCGTTGCTCCATCCGTCCTCC
ATCCCTTCTCCCACCCCCTCACCGCCGCCGGTGCATGCCTCCAATACCGG
TCATGGCTCCCCGGCTCTTCCCTCCCCCTCCTCGCCTCAGCCCTTGACCG
AACATTCTCCTGGCTCCCGCCCCCCCTGTATC

protein sequence of rna1135

>rna1135-protein ID=rna1135-protein|Name=rna1135|organism=Nannochloropsis gaditana|type=polypeptide|length=458bp
MSRRPAALITPPSASSGHILPHIYHPCPWRRVRMLSTRRAGLGGLSTMFL
FNTVRAFLALPSSICPPTSQPYIPSIRSRSMGSAIVSMPRPTSTPSSTPA
HTIKMATSSPSTPNPAPPAGIQATTRPRSDTIDPSAYIAPSVGLPTTVSP
SSLGDFKTCPRLYRFRHLEKIPEPPSEVMVRGSMVHDALDELFSQPPEKR
SKEVLHDIFRAVWLKRRDKYLELFPSTEDQRAFGMAGLKLLSNYLKVETP
AEQEPLMREFRMRVPFPDGPSVTGILDRVDVEPGSGEWVVVDYKTGKAPA
LKYSDAVNERIMNDKFFQLKVYALLLEQVKQRTPTRLKLIYLGPSPPQLS
PSPSLHFPRLVPISFLRGFYRVFVSSGCLEGQGRRYVPPSCSEICRRPLP
LLPPSLLSLFSCRRSDGHVHAPATGRLGRNKNRASRPVGTHRRRVESGFL
PRHPREAL

mRNA from alignment at CM002456.1:1275368..1278443+

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>rna1135 ID=rna1135|Name=rna1135|organism=Nannochloropsis gaditana|type=mRNA|length=3076bp|location=Sequence derived from alignment at CM002456.1:1275368..1278443+ (Nannochloropsis gaditana)
CTTTCGGCAGCGAGTACTTCTCTTTGTGGTCCACACGCAGGGTCCTCTCC
AGCAATTTAATCCCGTTCATATTGTCCACCGCCAAAATGGTGCTGCGTTG
ATCCTCGTACTTCAAAAAGGCGAAACCTTTGCTCTTCCCTGTCCCCTTGT
CTCGGACCAAGTGCAAGTCCTCGATTTCCCCCCACTGAGACATAACACAC
AACACGTCACCTTCGCTCAATTGCAAAGGCAAGCTACCCACAAAGACCCA
GGCAGAGTTTTTATACTGTCCATGCCAACTGCCCTCCATTCCAGCCGTCC
CGCGCTGTAGTTCCTTTTCATTGAGACGCTGGATCTCTCGAACGACGTTC
ATTAGAGCTGATGTACAGGCAGTGCCTGTCAGTCCACGATGTTTTTAGCA
ACCCATTCACAGAATCGAAGGAAAGAACAGATGGAAACGTGAGATCAGTT
TCATGACGCGGTACATGAAATGGAAAATAAAAAGCATTTTACTCGGATTA
CAAGCCTTTTTACGCCATTTTAACCATACCCAATTGAAAAATCTTACATC
AATGACACGCTGAGCCCTCAACTTGTAAAGTCCCGTGTGCATATAGGCTT
TTGATACATACGGGAGGTTGGGACGCTAACTACATTATCATAGAGAGAGC
CGAGCCCCCAAAAACGTTTCTTTATGCGCGAACGTATCAACCACGACCTC
TGAGGCGCTCCAAATGTCTTATTTGTCGTGTCAACCATTGTGCTATCTAC
TTCTAGCGCTACCCAGCTCACAATTAGCTCTACTTTGGTGCGGAGGCGTA
CCACCATGACTGCGCTCGCTGCCTTGAAGCtagccttccccccctgttGC
CCTTTGACGAAATACAACCCAACCCAAGCTTCAACGCCCGGGCTCAGCGT
GCAAATCTTGAAGGCCTTCTCTCGCTGCATAGTGACGTTGTACCAGGCCT
GACGCCCCTCAGCGTGCACGAACAATCCTCTTTATGCACAGGCACCCCCC
GTCGCAGGCCTCTCTGTCGCCATGTCCAGGCGCCCAGCTGCATTGATAAC
ACCACCGTCAGCATCATCAGGCCACATTTTACCTCACATCTACCATCCTT
GTCCATGGCGACGGGTCCGAATGCTGAGCACGCGACGGGCTGGCCTGGGA
GGCCTGAGCACAATGTTCCTCTTCAACACTGTCCGTGCATTTCTAGCCCT
ACCATCAAGCATCTGTCCCCCCACATCGCAACCGTACATCCCTTCGATCA
GGTCAAGAAGCATGGGCTCAGCAATAGTCTCGATGCCGCGTCCGACATCG
ACCCCATCGTCTACCCCTGCACATACGATCAAAatggcaacctcctcccc
ttctactCCTAACCCCGCACCTCCGGCGGGCATTCAAGCGACCACCAGAC
CCAGAAGTGACACCATAGACCCTTCCGCCTACATAGCACCGAGTGTGGGG
CTTCCTACTACCGtctcgccttcttctctggGCGATTTTAAAACCTGCCC
ACGCCTGTACAGGTTTCGACATTTGGAAAAAATCCCAGAACCGCCCTCGG
AGGTCATGGTCCGTGGCTCCATGGTTCACGACGCCTTGGACGAACTCTTT
TCCCAGCCCCCCGAAAAACGAAGTAAAGAAGTCTTGCACGACATATTCCG
TGCAGTGTGGTTGAAGCGAAGGGACAAGTATCTGGAactcttcccttcca
ccgaGGATCAGCGGGCCTTTGGCATGGCTGGGTTGAAGCTGCTTTCGAAT
TATTTGAAGGTGGGTGGACGCGTCCATGCCGAATAGGGCTTGAGAATGCC
GATGGACAACTATGTTATGGGCCACGTGTTTCATGTTCGTTTCTCCAATC
CGACCATGCGAGTACTTCtgaacctcccttccctcctcatctcccccctc
cgctcctttccACCTCGGCGCTTCAGGTGGAAACCCCAGCCGAGCAAGAA
CCTCTGATGCGCGAGTTCCGCATGCGGGTGCCTTTTCCGGACGGGCCGAG
CGTGACTGGCATCTTGGACAGGGTCGATGTGGAGCCCGGGTCGGGGGAGT
GGGTGGTGGTAGACTACAAGACTGGTggggcccctccctccctccctccc
cacttccttccctccctcccttcgactcccttttcctactttttccttct
cattcACATTCCTGCATGCGCCGTATGTctcgctttctcttctttaAGGT
CCTTCTCCgtactcccccccccgaatGCTCTCCTTTGACCCCTCCCACGT
CTCCTCATCTGCTCACCCTGtcccctcgcccactccATCTCCCCATGACA
GGAAAGGCTCCTGCCCTCAAATATTCCGACGCGGTGAACGAACGGATCAT
GAACGACAAGTTCTTTCAGCTTAAAGTGTacgctctccttctcgaacAGG
TCAAACAACGGACGCCCACGCGACTGAAGCTGATCTACCTCGgtccgtcc
cctccccagctgtctccctctccatctctgCATTTTCCCCGACTTGTTCc
aatctccttccttcgtggTTTTTATCGCGTCTTCGTTTCCTCTGGTTGTC
TGGAAGgtcagggaaggaggtatgTTCCTCCAAGCTGCTCTGAAATCTgt
cgccgccctctccctcttttgcctccctctctcctttccctcttctcttg
caGACGGTCCGACGGTCATGTCCATGCGCCTGCGACGGGAAGACTTGGCA
GAAACAAAAACCGAGCTTCTCGGCCTGTGGGAACGCATCGTCGGCGCGTG
GAAAGCGgattccttccccgccaccccaGGGAAGCTCTGTGAGTGGTGTT
CCTTCAAATCTATATGCCCTGCCTGGAATTTCAcccgagaggaagggggg
gaagtggaagggatgaagagtgtaggaggagtggagggggacgcgtgggt
ggcagggagggatgcgaAGGGGGGAGTCGCTCAGGGATGAGAGGGACGTG
TGATATATGGAAGGtggtagggggggggggaaagggggcgtCAAATTACC
GAATGAAATGGAAAAAataaggaagggaggggagcgaacGTGGCTGGATT
GTAGAAAGAAAATATCAAAGCAATCC

Coding sequence (CDS) from alignment at CM002456.1:1275368..1278443+

>rna1135 ID=rna1135|Name=rna1135|organism=Nannochloropsis gaditana|type=CDS|length=4131bp|location=Sequence derived from alignment at CM002456.1:1275368..1278443+ (Nannochloropsis gaditana)
ATGTCCAGGCGCCCAGCTGCATTGATAACACCACCGTCAGCATCATCAGG
CCACATTTTACCTCACATCTACCATCCTTGTCCATGGCGACGGGTCCGAA
TGCTGAGCACGCGACGGGCTGGCCTGGGAGGCCTGAGCACAATGTTCCTC
TTCAACACTGTCCGTGCATTTCTAGCCCTACCATCAAGCATCTGTCCCCC
CACATCGCAACCGTACATCCCTTCGATCAGGTCAAGAAGCATGGGCTCAG
CAATAGTCTCGATGCCGCGTCCGACATCGACCCCATCGTCTACCCCTGCA
CATACGATCAAAatggcaacctcctccccttctactCCTAACCCCGCACC
TCCGGCGGGCATTCAAGCGACCACCAGACCCAGAAGTGACACCATAGACC
CTTCCGCCTACATAGCACCGAGTGTGGGGCTTCCTACTACCGtctcgcct
tcttctctggGCGATTTTAAAACCTGCCCACGCCTGTACAGGTTTCGACA
TTTGGAAAAAATCCCAGAACCGCCCTCGGAGGTCATGGTCCGTGGCTCCA
TGGTTCACGACGCCTTGGACGAACTCTTTTCCCAGCCCCCCGAAAAACGA
AGTAAAGAAGTCTTGCACGACATATTCCGTGCAGTGTGGTTGAAGCGAAG
GGACAAGTATCTGGAactcttcccttccaccgaGGATCAGCGGGCCTTTG
GCATGGCTGGGTTGAAGCTGCTTTCGAATTATTTGAAGGTGGAAACCCCA
GCCGAGCAAGAACCTCTGATGCGCGAGTTCCGCATGCGGGTGCCTTTTCC
GGACGGGCCGAGCGTGACTGGCATCTTGGACAGGGTCGATGTGGAGCCCG
GGTCGGGGGAGTGGGTGGTGGTAGACTACAAGACTGGAAAGGCTCCTGCC
CTCAAATATTCCGACGCGGTGAACGAACGGATCATGAACGACAAGTTCTT
TCAGCTTAAAGTGTacgctctccttctcgaacAGGTCAAACAACGGACGC
CCACGCGACTGAAGCTGATCTACCTCGgtccgtcccctccccagctgtct
ccctctccatctctgCATTTTCCCCGACTTGTTCcaatctccttccttcg
tggTTTTTATCGCGTCTTCGTTTCCTCTGGTTGTCTGGAAGgtcagggaa
ggaggtatgTTCCTCCAAGCTGCTCTGAAATCTgtcgccgccctctccct
cttttgcctccctctctcctttccctcttctcttgcaGACGGTCCGACGG
TCATGTCCATGCGCCTGCGACGGGAAGACTTGGCAGAAACAAAAACCGAG
CTTCTCGGCCTGTGGGAACGCATCGTCGGCGCGTGGAAAGCGgattcctt
ccccgccaccccaGGGAAGCTCTGTGAATGTCCAGGCGCCCAGCTGCATT
GATAACACCACCGTCAGCATCATCAGGCCACATTTTACCTCACATCTACC
ATCCTTGTCCATGGCGACGGGTCCGAATGCTGAGCACGCGACGGGCTGGC
CTGGGAGGCCTGAGCACAATGTTCCTCTTCAACACTGTCCGTGCATTTCT
AGCCCTACCATCAAGCATCTGTCCCCCCACATCGCAACCGTACATCCCTT
CGATCAGGTCAAGAAGCATGGGCTCAGCAATAGTCTCGATGCCGCGTCCG
ACATCGACCCCATCGTCTACCCCTGCACATACGATCAAAatggcaacctc
ctccccttctactCCTAACCCCGCACCTCCGGCGGGCATTCAAGCGACCA
CCAGACCCAGAAGTGACACCATAGACCCTTCCGCCTACATAGCACCGAGT
GTGGGGCTTCCTACTACCGtctcgccttcttctctggGCGATTTTAAAAC
CTGCCCACGCCTGTACAGGTTTCGACATTTGGAAAAAATCCCAGAACCGC
CCTCGGAGGTCATGGTCCGTGGCTCCATGGTTCACGACGCCTTGGACGAA
CTCTTTTCCCAGCCCCCCGAAAAACGAAGTAAAGAAGTCTTGCACGACAT
ATTCCGTGCAGTGTGGTTGAAGCGAAGGGACAAGTATCTGGAactcttcc
cttccaccgaGGATCAGCGGGCCTTTGGCATGGCTGGGTTGAAGCTGCTT
TCGAATTATTTGAAGGTGGAAACCCCAGCCGAGCAAGAACCTCTGATGCG
CGAGTTCCGCATGCGGGTGCCTTTTCCGGACGGGCCGAGCGTGACTGGCA
TCTTGGACAGGGTCGATGTGGAGCCCGGGTCGGGGGAGTGGGTGGTGGTA
GACTACAAGACTGGAAAGGCTCCTGCCCTCAAATATTCCGACGCGGTGAA
CGAACGGATCATGAACGACAAGTTCTTTCAGCTTAAAGTGTacgctctcc
ttctcgaacAGGTCAAACAACGGACGCCCACGCGACTGAAGCTGATCTAC
CTCGgtccgtcccctccccagctgtctccctctccatctctgCATTTTCC
CCGACTTGTTCcaatctccttccttcgtggTTTTTATCGCGTCTTCGTTT
CCTCTGGTTGTCTGGAAGgtcagggaaggaggtatgTTCCTCCAAGCTGC
TCTGAAATCTgtcgccgccctctccctcttttgcctccctctctcctttc
cctcttctcttgcaGACGGTCCGACGGTCATGTCCATGCGCCTGCGACGG
GAAGACTTGGCAGAAACAAAAACCGAGCTTCTCGGCCTGTGGGAACGCAT
CGTCGGCGCGTGGAAAGCGgattccttccccgccaccccaGGGAAGCTCT
GTGAATGTCCAGGCGCCCAGCTGCATTGATAACACCACCGTCAGCATCAT
CAGGCCACATTTTACCTCACATCTACCATCCTTGTCCATGGCGACGGGTC
CGAATGCTGAGCACGCGACGGGCTGGCCTGGGAGGCCTGAGCACAATGTT
CCTCTTCAACACTGTCCGTGCATTTCTAGCCCTACCATCAAGCATCTGTC
CCCCCACATCGCAACCGTACATCCCTTCGATCAGGTCAAGAAGCATGGGC
TCAGCAATAGTCTCGATGCCGCGTCCGACATCGACCCCATCGTCTACCCC
TGCACATACGATCAAAatggcaacctcctccccttctactCCTAACCCCG
CACCTCCGGCGGGCATTCAAGCGACCACCAGACCCAGAAGTGACACCATA
GACCCTTCCGCCTACATAGCACCGAGTGTGGGGCTTCCTACTACCGtctc
gccttcttctctggGCGATTTTAAAACCTGCCCACGCCTGTACAGGTTTC
GACATTTGGAAAAAATCCCAGAACCGCCCTCGGAGGTCATGGTCCGTGGC
TCCATGGTTCACGACGCCTTGGACGAACTCTTTTCCCAGCCCCCCGAAAA
ACGAAGTAAAGAAGTCTTGCACGACATATTCCGTGCAGTGTGGTTGAAGC
GAAGGGACAAGTATCTGGAactcttcccttccaccgaGGATCAGCGGGCC
TTTGGCATGGCTGGGTTGAAGCTGCTTTCGAATTATTTGAAGGTGGAAAC
CCCAGCCGAGCAAGAACCTCTGATGCGCGAGTTCCGCATGCGGGTGCCTT
TTCCGGACGGGCCGAGCGTGACTGGCATCTTGGACAGGGTCGATGTGGAG
CCCGGGTCGGGGGAGTGGGTGGTGGTAGACTACAAGACTGGAAAGGCTCC
TGCCCTCAAATATTCCGACGCGGTGAACGAACGGATCATGAACGACAAGT
TCTTTCAGCTTAAAGTGTacgctctccttctcgaacAGGTCAAACAACGG
ACGCCCACGCGACTGAAGCTGATCTACCTCGgtccgtcccctccccagct
gtctccctctccatctctgCATTTTCCCCGACTTGTTCcaatctccttcc
ttcgtggTTTTTATCGCGTCTTCGTTTCCTCTGGTTGTCTGGAAGgtcag
ggaaggaggtatgTTCCTCCAAGCTGCTCTGAAATCTgtcgccgccctct
ccctcttttgcctccctctctcctttccctcttctcttgcaGACGGTCCG
ACGGTCATGTCCATGCGCCTGCGACGGGAAGACTTGGCAGAAACAAAAAC
CGAGCTTCTCGGCCTGTGGGAACGCATCGTCGGCGCGTGGAAAGCGgatt
ccttccccgccaccccaGGGAAGCTCTGTGA

Synonyms

Publications